GO Enrichment Analysis of Co-expressed Genes with
AT1G55490
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 2 | GO:1905421: regulation of plant organ morphogenesis | 0.00E+00 |
| 3 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 4 | GO:0030155: regulation of cell adhesion | 0.00E+00 |
| 5 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 6 | GO:0046838: phosphorylated carbohydrate dephosphorylation | 0.00E+00 |
| 7 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
| 8 | GO:0070272: proton-transporting ATP synthase complex biogenesis | 0.00E+00 |
| 9 | GO:0006412: translation | 1.85E-20 |
| 10 | GO:0042254: ribosome biogenesis | 1.70E-13 |
| 11 | GO:0032544: plastid translation | 2.63E-11 |
| 12 | GO:0015979: photosynthesis | 4.40E-07 |
| 13 | GO:0010027: thylakoid membrane organization | 3.73E-06 |
| 14 | GO:0009735: response to cytokinin | 5.40E-06 |
| 15 | GO:0019464: glycine decarboxylation via glycine cleavage system | 1.15E-05 |
| 16 | GO:0009658: chloroplast organization | 3.96E-05 |
| 17 | GO:0043489: RNA stabilization | 1.16E-04 |
| 18 | GO:0006438: valyl-tRNA aminoacylation | 1.16E-04 |
| 19 | GO:0015995: chlorophyll biosynthetic process | 1.30E-04 |
| 20 | GO:0019388: galactose catabolic process | 2.69E-04 |
| 21 | GO:0010270: photosystem II oxygen evolving complex assembly | 2.69E-04 |
| 22 | GO:0006418: tRNA aminoacylation for protein translation | 4.32E-04 |
| 23 | GO:0048281: inflorescence morphogenesis | 4.45E-04 |
| 24 | GO:0061077: chaperone-mediated protein folding | 4.74E-04 |
| 25 | GO:0009590: detection of gravity | 6.38E-04 |
| 26 | GO:0006241: CTP biosynthetic process | 6.38E-04 |
| 27 | GO:0006165: nucleoside diphosphate phosphorylation | 6.38E-04 |
| 28 | GO:0006228: UTP biosynthetic process | 6.38E-04 |
| 29 | GO:0010148: transpiration | 6.38E-04 |
| 30 | GO:0006546: glycine catabolic process | 8.47E-04 |
| 31 | GO:0006808: regulation of nitrogen utilization | 8.47E-04 |
| 32 | GO:0006183: GTP biosynthetic process | 8.47E-04 |
| 33 | GO:0009790: embryo development | 1.09E-03 |
| 34 | GO:0010190: cytochrome b6f complex assembly | 1.31E-03 |
| 35 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 1.31E-03 |
| 36 | GO:0000470: maturation of LSU-rRNA | 1.31E-03 |
| 37 | GO:0006828: manganese ion transport | 1.31E-03 |
| 38 | GO:0009955: adaxial/abaxial pattern specification | 1.56E-03 |
| 39 | GO:1901259: chloroplast rRNA processing | 1.56E-03 |
| 40 | GO:0009817: defense response to fungus, incompatible interaction | 1.73E-03 |
| 41 | GO:0070370: cellular heat acclimation | 1.84E-03 |
| 42 | GO:0009793: embryo development ending in seed dormancy | 1.84E-03 |
| 43 | GO:0010103: stomatal complex morphogenesis | 1.84E-03 |
| 44 | GO:0010196: nonphotochemical quenching | 1.84E-03 |
| 45 | GO:0005978: glycogen biosynthetic process | 2.13E-03 |
| 46 | GO:0001558: regulation of cell growth | 2.43E-03 |
| 47 | GO:0009409: response to cold | 2.57E-03 |
| 48 | GO:0006779: porphyrin-containing compound biosynthetic process | 3.07E-03 |
| 49 | GO:0006782: protoporphyrinogen IX biosynthetic process | 3.41E-03 |
| 50 | GO:0009073: aromatic amino acid family biosynthetic process | 3.76E-03 |
| 51 | GO:0043085: positive regulation of catalytic activity | 3.76E-03 |
| 52 | GO:0006816: calcium ion transport | 3.76E-03 |
| 53 | GO:0006415: translational termination | 3.76E-03 |
| 54 | GO:0045454: cell redox homeostasis | 3.83E-03 |
| 55 | GO:0005983: starch catabolic process | 4.13E-03 |
| 56 | GO:0045037: protein import into chloroplast stroma | 4.13E-03 |
| 57 | GO:0006006: glucose metabolic process | 4.50E-03 |
| 58 | GO:0009266: response to temperature stimulus | 4.89E-03 |
| 59 | GO:0010020: chloroplast fission | 4.89E-03 |
| 60 | GO:0006636: unsaturated fatty acid biosynthetic process | 5.70E-03 |
| 61 | GO:0009944: polarity specification of adaxial/abaxial axis | 6.12E-03 |
| 62 | GO:0000027: ribosomal large subunit assembly | 6.12E-03 |
| 63 | GO:0051302: regulation of cell division | 6.56E-03 |
| 64 | GO:0016114: terpenoid biosynthetic process | 7.00E-03 |
| 65 | GO:0009411: response to UV | 7.92E-03 |
| 66 | GO:0001944: vasculature development | 7.92E-03 |
| 67 | GO:0006633: fatty acid biosynthetic process | 8.39E-03 |
| 68 | GO:0006662: glycerol ether metabolic process | 9.89E-03 |
| 69 | GO:0019252: starch biosynthetic process | 1.09E-02 |
| 70 | GO:0006810: transport | 1.13E-02 |
| 71 | GO:0055114: oxidation-reduction process | 1.14E-02 |
| 72 | GO:0048481: plant ovule development | 1.80E-02 |
| 73 | GO:0006499: N-terminal protein myristoylation | 1.92E-02 |
| 74 | GO:0009631: cold acclimation | 1.99E-02 |
| 75 | GO:0045087: innate immune response | 2.12E-02 |
| 76 | GO:0009853: photorespiration | 2.12E-02 |
| 77 | GO:0034599: cellular response to oxidative stress | 2.19E-02 |
| 78 | GO:0042542: response to hydrogen peroxide | 2.47E-02 |
| 79 | GO:0042742: defense response to bacterium | 2.52E-02 |
| 80 | GO:0009965: leaf morphogenesis | 2.76E-02 |
| 81 | GO:0009664: plant-type cell wall organization | 2.99E-02 |
| 82 | GO:0006364: rRNA processing | 3.15E-02 |
| 83 | GO:0009585: red, far-red light phototransduction | 3.15E-02 |
| 84 | GO:0006096: glycolytic process | 3.54E-02 |
| 85 | GO:0006396: RNA processing | 4.13E-02 |
| 86 | GO:0009416: response to light stimulus | 4.63E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0051738: xanthophyll binding | 0.00E+00 |
| 2 | GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity | 0.00E+00 |
| 3 | GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity | 0.00E+00 |
| 4 | GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity | 0.00E+00 |
| 5 | GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity | 0.00E+00 |
| 6 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
| 7 | GO:0019843: rRNA binding | 9.75E-25 |
| 8 | GO:0003735: structural constituent of ribosome | 1.81E-22 |
| 9 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 6.10E-06 |
| 10 | GO:0005528: FK506 binding | 1.34E-05 |
| 11 | GO:0051920: peroxiredoxin activity | 4.06E-05 |
| 12 | GO:0016209: antioxidant activity | 7.12E-05 |
| 13 | GO:0019203: carbohydrate phosphatase activity | 1.16E-04 |
| 14 | GO:0004832: valine-tRNA ligase activity | 1.16E-04 |
| 15 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 1.16E-04 |
| 16 | GO:0050308: sugar-phosphatase activity | 1.16E-04 |
| 17 | GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity | 2.69E-04 |
| 18 | GO:0004614: phosphoglucomutase activity | 2.69E-04 |
| 19 | GO:0042389: omega-3 fatty acid desaturase activity | 2.69E-04 |
| 20 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 3.63E-04 |
| 21 | GO:0017150: tRNA dihydrouridine synthase activity | 4.45E-04 |
| 22 | GO:0002161: aminoacyl-tRNA editing activity | 4.45E-04 |
| 23 | GO:0004148: dihydrolipoyl dehydrogenase activity | 4.45E-04 |
| 24 | GO:0016149: translation release factor activity, codon specific | 6.38E-04 |
| 25 | GO:0004550: nucleoside diphosphate kinase activity | 6.38E-04 |
| 26 | GO:0043023: ribosomal large subunit binding | 6.38E-04 |
| 27 | GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity | 6.38E-04 |
| 28 | GO:0016851: magnesium chelatase activity | 6.38E-04 |
| 29 | GO:0004812: aminoacyl-tRNA ligase activity | 6.61E-04 |
| 30 | GO:0042277: peptide binding | 8.47E-04 |
| 31 | GO:0019199: transmembrane receptor protein kinase activity | 8.47E-04 |
| 32 | GO:2001070: starch binding | 1.31E-03 |
| 33 | GO:0000287: magnesium ion binding | 2.27E-03 |
| 34 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 2.43E-03 |
| 35 | GO:0016491: oxidoreductase activity | 2.45E-03 |
| 36 | GO:0003747: translation release factor activity | 2.74E-03 |
| 37 | GO:0008138: protein tyrosine/serine/threonine phosphatase activity | 2.74E-03 |
| 38 | GO:0005384: manganese ion transmembrane transporter activity | 3.07E-03 |
| 39 | GO:0008047: enzyme activator activity | 3.41E-03 |
| 40 | GO:0000049: tRNA binding | 4.13E-03 |
| 41 | GO:0015095: magnesium ion transmembrane transporter activity | 4.50E-03 |
| 42 | GO:0031072: heat shock protein binding | 4.50E-03 |
| 43 | GO:0008266: poly(U) RNA binding | 4.89E-03 |
| 44 | GO:0003723: RNA binding | 7.08E-03 |
| 45 | GO:0022891: substrate-specific transmembrane transporter activity | 7.92E-03 |
| 46 | GO:0047134: protein-disulfide reductase activity | 8.88E-03 |
| 47 | GO:0050662: coenzyme binding | 1.04E-02 |
| 48 | GO:0004791: thioredoxin-disulfide reductase activity | 1.04E-02 |
| 49 | GO:0048038: quinone binding | 1.15E-02 |
| 50 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.26E-02 |
| 51 | GO:0008483: transaminase activity | 1.37E-02 |
| 52 | GO:0008237: metallopeptidase activity | 1.37E-02 |
| 53 | GO:0004601: peroxidase activity | 1.43E-02 |
| 54 | GO:0016168: chlorophyll binding | 1.55E-02 |
| 55 | GO:0004222: metalloendopeptidase activity | 1.92E-02 |
| 56 | GO:0005509: calcium ion binding | 2.28E-02 |
| 57 | GO:0051082: unfolded protein binding | 4.04E-02 |
| 58 | GO:0015035: protein disulfide oxidoreductase activity | 4.13E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005943: phosphatidylinositol 3-kinase complex, class IA | 0.00E+00 |
| 2 | GO:0044391: ribosomal subunit | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 1.94E-62 |
| 4 | GO:0009570: chloroplast stroma | 4.45E-46 |
| 5 | GO:0009941: chloroplast envelope | 5.35E-41 |
| 6 | GO:0005840: ribosome | 5.35E-24 |
| 7 | GO:0009535: chloroplast thylakoid membrane | 6.54E-22 |
| 8 | GO:0009579: thylakoid | 7.76E-22 |
| 9 | GO:0009534: chloroplast thylakoid | 1.02E-18 |
| 10 | GO:0009543: chloroplast thylakoid lumen | 5.34E-12 |
| 11 | GO:0031977: thylakoid lumen | 5.13E-07 |
| 12 | GO:0009706: chloroplast inner membrane | 3.60E-06 |
| 13 | GO:0005960: glycine cleavage complex | 6.10E-06 |
| 14 | GO:0009654: photosystem II oxygen evolving complex | 1.59E-05 |
| 15 | GO:0019898: extrinsic component of membrane | 5.26E-05 |
| 16 | GO:0015934: large ribosomal subunit | 1.85E-04 |
| 17 | GO:0000311: plastid large ribosomal subunit | 2.16E-04 |
| 18 | GO:0030095: chloroplast photosystem II | 2.81E-04 |
| 19 | GO:0010007: magnesium chelatase complex | 4.45E-04 |
| 20 | GO:0015935: small ribosomal subunit | 4.74E-04 |
| 21 | GO:0031969: chloroplast membrane | 5.08E-04 |
| 22 | GO:0009536: plastid | 5.25E-04 |
| 23 | GO:0022625: cytosolic large ribosomal subunit | 5.49E-04 |
| 24 | GO:0010287: plastoglobule | 8.44E-04 |
| 25 | GO:0009517: PSII associated light-harvesting complex II | 8.47E-04 |
| 26 | GO:0010319: stromule | 1.19E-03 |
| 27 | GO:0009295: nucleoid | 1.19E-03 |
| 28 | GO:0009840: chloroplastic endopeptidase Clp complex | 1.56E-03 |
| 29 | GO:0009533: chloroplast stromal thylakoid | 1.84E-03 |
| 30 | GO:0009538: photosystem I reaction center | 2.13E-03 |
| 31 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.74E-03 |
| 32 | GO:0005763: mitochondrial small ribosomal subunit | 2.74E-03 |
| 33 | GO:0009508: plastid chromosome | 4.50E-03 |
| 34 | GO:0016020: membrane | 5.05E-03 |
| 35 | GO:0009532: plastid stroma | 7.00E-03 |
| 36 | GO:0022626: cytosolic ribosome | 9.78E-03 |
| 37 | GO:0009523: photosystem II | 1.09E-02 |
| 38 | GO:0030529: intracellular ribonucleoprotein complex | 1.49E-02 |
| 39 | GO:0048046: apoplast | 4.32E-02 |
| 40 | GO:0005623: cell | 4.83E-02 |