co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G29930

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0005996: monosaccharide metabolic process	0.00E+00
2	GO:0016118: carotenoid catabolic process	0.00E+00
3	GO:0080114: positive regulation of glycine hydroxymethyltransferase activity	0.00E+00
4	GO:0015717: triose phosphate transport	0.00E+00
5	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
6	GO:0015979: photosynthesis	4.75E-34
7	GO:0009768: photosynthesis, light harvesting in photosystem I	3.48E-19
8	GO:0018298: protein-chromophore linkage	7.09E-16
9	GO:0009773: photosynthetic electron transport in photosystem I	2.18E-13
10	GO:0010196: nonphotochemical quenching	1.56E-12
11	GO:0009645: response to low light intensity stimulus	6.90E-10
12	GO:0009769: photosynthesis, light harvesting in photosystem II	2.01E-07
13	GO:0009644: response to high light intensity	2.16E-07
14	GO:0009409: response to cold	3.18E-07
15	GO:0010206: photosystem II repair	6.60E-07
16	GO:0010218: response to far red light	2.92E-06
17	GO:0010207: photosystem II assembly	3.29E-06
18	GO:0019464: glycine decarboxylation via glycine cleavage system	6.24E-06
19	GO:0010021: amylopectin biosynthetic process	6.24E-06
20	GO:0010114: response to red light	6.86E-06
21	GO:0042742: defense response to bacterium	1.41E-05
22	GO:0009735: response to cytokinin	1.50E-05
23	GO:0042549: photosystem II stabilization	1.59E-05
24	GO:0010027: thylakoid membrane organization	4.95E-05
25	GO:0032544: plastid translation	5.19E-05
26	GO:0080093: regulation of photorespiration	8.09E-05
27	GO:0031998: regulation of fatty acid beta-oxidation	8.09E-05
28	GO:0009637: response to blue light	1.06E-04
29	GO:0019684: photosynthesis, light reaction	1.11E-04
30	GO:0018119: peptidyl-cysteine S-nitrosylation	1.11E-04
31	GO:0006094: gluconeogenesis	1.49E-04
32	GO:0009767: photosynthetic electron transport chain	1.49E-04
33	GO:0009416: response to light stimulus	1.73E-04
34	GO:0035304: regulation of protein dephosphorylation	1.93E-04
35	GO:0016124: xanthophyll catabolic process	1.93E-04
36	GO:0097054: L-glutamate biosynthetic process	1.93E-04
37	GO:0016121: carotene catabolic process	1.93E-04
38	GO:0030388: fructose 1,6-bisphosphate metabolic process	1.93E-04
39	GO:0006000: fructose metabolic process	3.24E-04
40	GO:0035436: triose phosphate transmembrane transport	3.24E-04
41	GO:0090153: regulation of sphingolipid biosynthetic process	3.24E-04
42	GO:0016050: vesicle organization	3.24E-04
43	GO:0006537: glutamate biosynthetic process	4.66E-04
44	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	4.66E-04
45	GO:0071484: cellular response to light intensity	4.66E-04
46	GO:0019252: starch biosynthetic process	5.54E-04
47	GO:0009765: photosynthesis, light harvesting	6.21E-04
48	GO:0045727: positive regulation of translation	6.21E-04
49	GO:0015713: phosphoglycerate transport	6.21E-04
50	GO:0030104: water homeostasis	6.21E-04
51	GO:0006546: glycine catabolic process	6.21E-04
52	GO:0019676: ammonia assimilation cycle	6.21E-04
53	GO:0015976: carbon utilization	6.21E-04
54	GO:0007623: circadian rhythm	7.39E-04
55	GO:0006544: glycine metabolic process	7.86E-04
56	GO:0006097: glyoxylate cycle	7.86E-04
57	GO:0006461: protein complex assembly	7.86E-04
58	GO:0000470: maturation of LSU-rRNA	9.59E-04
59	GO:0009635: response to herbicide	9.59E-04
60	GO:0009643: photosynthetic acclimation	9.59E-04
61	GO:0006563: L-serine metabolic process	9.59E-04
62	GO:0015995: chlorophyll biosynthetic process	9.86E-04
63	GO:0009955: adaxial/abaxial pattern specification	1.14E-03
64	GO:1901259: chloroplast rRNA processing	1.14E-03
65	GO:0009658: chloroplast organization	1.26E-03
66	GO:0009772: photosynthetic electron transport in photosystem II	1.34E-03
67	GO:0071446: cellular response to salicylic acid stimulus	1.34E-03
68	GO:0009853: photorespiration	1.36E-03
69	GO:0005978: glycogen biosynthetic process	1.54E-03
70	GO:0080167: response to karrikin	1.65E-03
71	GO:0006002: fructose 6-phosphate metabolic process	1.76E-03
72	GO:0009657: plastid organization	1.76E-03
73	GO:2000031: regulation of salicylic acid mediated signaling pathway	1.76E-03
74	GO:0006098: pentose-phosphate shunt	1.98E-03
75	GO:0090333: regulation of stomatal closure	1.98E-03
76	GO:0010205: photoinhibition	2.22E-03
77	GO:0035999: tetrahydrofolate interconversion	2.22E-03
78	GO:0005982: starch metabolic process	2.22E-03
79	GO:0000272: polysaccharide catabolic process	2.71E-03
80	GO:0045037: protein import into chloroplast stroma	2.97E-03
81	GO:0005986: sucrose biosynthetic process	3.24E-03
82	GO:0006108: malate metabolic process	3.24E-03
83	GO:0006412: translation	3.45E-03
84	GO:0019253: reductive pentose-phosphate cycle	3.52E-03
85	GO:0005985: sucrose metabolic process	3.81E-03
86	GO:0006289: nucleotide-excision repair	4.40E-03
87	GO:0009269: response to desiccation	5.02E-03
88	GO:0035428: hexose transmembrane transport	5.34E-03
89	GO:0006810: transport	5.41E-03
90	GO:0071215: cellular response to abscisic acid stimulus	5.67E-03
91	GO:0046686: response to cadmium ion	5.92E-03
92	GO:0042631: cellular response to water deprivation	6.70E-03
93	GO:0048868: pollen tube development	7.06E-03
94	GO:0046323: glucose import	7.06E-03
95	GO:0006814: sodium ion transport	7.42E-03
96	GO:0000302: response to reactive oxygen species	8.17E-03
97	GO:0042254: ribosome biogenesis	8.96E-03
98	GO:0016311: dephosphorylation	1.23E-02
99	GO:0010119: regulation of stomatal movement	1.41E-02
100	GO:0034599: cellular response to oxidative stress	1.56E-02
101	GO:0006099: tricarboxylic acid cycle	1.56E-02
102	GO:0009744: response to sucrose	1.80E-02
103	GO:0031347: regulation of defense response	2.07E-02
104	GO:0006364: rRNA processing	2.23E-02
105	GO:0006096: glycolytic process	2.51E-02
106	GO:0009626: plant-type hypersensitive response	2.63E-02
107	GO:0009624: response to nematode	2.87E-02
108	GO:0009737: response to abscisic acid	3.54E-02
109	GO:0055085: transmembrane transport	3.64E-02
110	GO:0042744: hydrogen peroxide catabolic process	3.69E-02
111	GO:0009790: embryo development	3.76E-02
112	GO:0009793: embryo development ending in seed dormancy	3.91E-02
113	GO:0010468: regulation of gene expression	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
2	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
3	GO:0046408: chlorophyll synthetase activity	0.00E+00
4	GO:0051738: xanthophyll binding	0.00E+00
5	GO:0031409: pigment binding	1.08E-19
6	GO:0016168: chlorophyll binding	1.64E-18
7	GO:0008266: poly(U) RNA binding	2.99E-08
8	GO:0019843: rRNA binding	5.65E-08
9	GO:0005515: protein binding	5.44E-05
10	GO:0010242: oxygen evolving activity	8.09E-05
11	GO:0009496: plastoquinol--plastocyanin reductase activity	8.09E-05
12	GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity	8.09E-05
13	GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity	8.09E-05
14	GO:0008158: hedgehog receptor activity	8.09E-05
15	GO:0016041: glutamate synthase (ferredoxin) activity	8.09E-05
16	GO:0033201: alpha-1,4-glucan synthase activity	1.93E-04
17	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	1.93E-04
18	GO:0008967: phosphoglycolate phosphatase activity	1.93E-04
19	GO:0003844: 1,4-alpha-glucan branching enzyme activity	1.93E-04
20	GO:0010297: heteropolysaccharide binding	1.93E-04
21	GO:0046872: metal ion binding	2.62E-04
22	GO:0004324: ferredoxin-NADP+ reductase activity	3.24E-04
23	GO:0043169: cation binding	3.24E-04
24	GO:0004373: glycogen (starch) synthase activity	3.24E-04
25	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	3.24E-04
26	GO:0071917: triose-phosphate transmembrane transporter activity	3.24E-04
27	GO:0004375: glycine dehydrogenase (decarboxylating) activity	4.66E-04
28	GO:0016851: magnesium chelatase activity	4.66E-04
29	GO:0003735: structural constituent of ribosome	5.17E-04
30	GO:0009011: starch synthase activity	6.21E-04
31	GO:0015120: phosphoglycerate transmembrane transporter activity	6.21E-04
32	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	6.21E-04
33	GO:0004372: glycine hydroxymethyltransferase activity	7.86E-04
34	GO:0003959: NADPH dehydrogenase activity	7.86E-04
35	GO:0051538: 3 iron, 4 sulfur cluster binding	7.86E-04
36	GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity	7.86E-04
37	GO:0004332: fructose-bisphosphate aldolase activity	9.59E-04
38	GO:0004130: cytochrome-c peroxidase activity	9.59E-04
39	GO:0016615: malate dehydrogenase activity	9.59E-04
40	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.14E-03
41	GO:0030060: L-malate dehydrogenase activity	1.14E-03
42	GO:0071949: FAD binding	1.98E-03
43	GO:0005509: calcium ion binding	2.67E-03
44	GO:0005315: inorganic phosphate transmembrane transporter activity	3.24E-03
45	GO:0004089: carbonate dehydratase activity	3.24E-03
46	GO:0031072: heat shock protein binding	3.24E-03
47	GO:0015144: carbohydrate transmembrane transporter activity	4.93E-03
48	GO:0005351: sugar:proton symporter activity	5.56E-03
49	GO:0022891: substrate-specific transmembrane transporter activity	5.67E-03
50	GO:0003756: protein disulfide isomerase activity	6.01E-03
51	GO:0008514: organic anion transmembrane transporter activity	6.01E-03
52	GO:0005355: glucose transmembrane transporter activity	7.42E-03
53	GO:0050662: coenzyme binding	7.42E-03
54	GO:0048038: quinone binding	8.17E-03
55	GO:0003746: translation elongation factor activity	1.51E-02
56	GO:0003993: acid phosphatase activity	1.56E-02
57	GO:0051537: 2 iron, 2 sulfur cluster binding	1.91E-02
58	GO:0016491: oxidoreductase activity	1.94E-02
59	GO:0005198: structural molecule activity	1.96E-02
60	GO:0015293: symporter activity	1.96E-02
61	GO:0051082: unfolded protein binding	2.87E-02
62	GO:0030170: pyridoxal phosphate binding	3.62E-02
63	GO:0008565: protein transporter activity	3.82E-02
64	GO:0015297: antiporter activity	4.09E-02

Rank	GO Term	Adjusted P value
1	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
2	GO:0009783: photosystem II antenna complex	0.00E+00
3	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
4	GO:0042579: microbody	0.00E+00
5	GO:0009534: chloroplast thylakoid	2.47E-72
6	GO:0009535: chloroplast thylakoid membrane	7.09E-60
7	GO:0009507: chloroplast	2.05E-50
8	GO:0009579: thylakoid	2.46E-46
9	GO:0009941: chloroplast envelope	1.64E-42
10	GO:0010287: plastoglobule	1.21E-24
11	GO:0009570: chloroplast stroma	9.53E-21
12	GO:0009522: photosystem I	6.16E-20
13	GO:0030076: light-harvesting complex	2.07E-17
14	GO:0009523: photosystem II	3.32E-15
15	GO:0009543: chloroplast thylakoid lumen	8.88E-15
16	GO:0031977: thylakoid lumen	4.92E-13
17	GO:0016020: membrane	5.95E-13
18	GO:0030095: chloroplast photosystem II	9.48E-13
19	GO:0042651: thylakoid membrane	7.01E-10
20	GO:0009538: photosystem I reaction center	1.26E-09
21	GO:0009517: PSII associated light-harvesting complex II	1.51E-08
22	GO:0048046: apoplast	2.05E-08
23	GO:0009654: photosystem II oxygen evolving complex	8.43E-08
24	GO:0030093: chloroplast photosystem I	3.58E-07
25	GO:0019898: extrinsic component of membrane	4.76E-07
26	GO:0009706: chloroplast inner membrane	1.02E-06
27	GO:0009508: plastid chromosome	2.64E-06
28	GO:0016021: integral component of membrane	7.42E-06
29	GO:0005840: ribosome	1.63E-05
30	GO:0009533: chloroplast stromal thylakoid	3.11E-05
31	GO:0009501: amyloplast	4.08E-05
32	GO:0009295: nucleoid	4.13E-05
33	GO:0010319: stromule	4.13E-05
34	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	6.45E-05
35	GO:0009782: photosystem I antenna complex	8.09E-05
36	GO:0000427: plastid-encoded plastid RNA polymerase complex	1.93E-04
37	GO:0031969: chloroplast membrane	2.35E-04
38	GO:0010007: magnesium chelatase complex	3.24E-04
39	GO:0005960: glycine cleavage complex	4.66E-04
40	GO:0055035: plastid thylakoid membrane	7.86E-04
41	GO:0009512: cytochrome b6f complex	7.86E-04
42	GO:0042644: chloroplast nucleoid	1.98E-03
43	GO:0005763: mitochondrial small ribosomal subunit	1.98E-03
44	GO:0005759: mitochondrial matrix	5.18E-03
45	GO:0015934: large ribosomal subunit	1.41E-02
46	GO:0005777: peroxisome	3.29E-02
47	GO:0005623: cell	3.43E-02
48	GO:0005773: vacuole	3.69E-02