Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G22770

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010219: regulation of vernalization response0.00E+00
2GO:0012502: induction of programmed cell death0.00E+00
3GO:1903508: positive regulation of nucleic acid-templated transcription0.00E+00
4GO:1903428: positive regulation of reactive oxygen species biosynthetic process0.00E+00
5GO:0043171: peptide catabolic process0.00E+00
6GO:0009768: photosynthesis, light harvesting in photosystem I8.43E-12
7GO:0018298: protein-chromophore linkage2.64E-09
8GO:0009645: response to low light intensity stimulus3.31E-06
9GO:0009769: photosynthesis, light harvesting in photosystem II3.31E-06
10GO:0009416: response to light stimulus3.70E-06
11GO:0042542: response to hydrogen peroxide9.50E-06
12GO:0009644: response to high light intensity1.28E-05
13GO:0015979: photosynthesis1.66E-05
14GO:0009409: response to cold2.83E-05
15GO:0000380: alternative mRNA splicing, via spliceosome6.89E-05
16GO:0010218: response to far red light7.06E-05
17GO:0009637: response to blue light9.14E-05
18GO:0080167: response to karrikin9.40E-05
19GO:0010114: response to red light1.44E-04
20GO:0009737: response to abscisic acid1.44E-04
21GO:0007623: circadian rhythm1.60E-04
22GO:0015812: gamma-aminobutyric acid transport2.51E-04
23GO:0032958: inositol phosphate biosynthetic process2.51E-04
24GO:0006369: termination of RNA polymerase II transcription2.51E-04
25GO:0034472: snRNA 3'-end processing2.51E-04
26GO:0010496: intercellular transport2.51E-04
27GO:1990641: response to iron ion starvation2.51E-04
28GO:1902265: abscisic acid homeostasis2.51E-04
29GO:0006995: cellular response to nitrogen starvation4.80E-04
30GO:0009970: cellular response to sulfate starvation4.80E-04
31GO:0051170: nuclear import5.53E-04
32GO:0030003: cellular cation homeostasis5.53E-04
33GO:0090057: root radial pattern formation5.53E-04
34GO:0048833: specification of floral organ number5.53E-04
35GO:0030259: lipid glycosylation5.53E-04
36GO:0006101: citrate metabolic process5.53E-04
37GO:0006598: polyamine catabolic process8.99E-04
38GO:0042256: mature ribosome assembly8.99E-04
39GO:1902448: positive regulation of shade avoidance8.99E-04
40GO:0010228: vegetative to reproductive phase transition of meristem1.05E-03
41GO:0031936: negative regulation of chromatin silencing1.28E-03
42GO:0008643: carbohydrate transport1.28E-03
43GO:1901332: negative regulation of lateral root development1.28E-03
44GO:0006020: inositol metabolic process1.28E-03
45GO:0010601: positive regulation of auxin biosynthetic process1.28E-03
46GO:0044211: CTP salvage1.28E-03
47GO:0015749: monosaccharide transport1.28E-03
48GO:0048511: rhythmic process1.34E-03
49GO:0010017: red or far-red light signaling pathway1.46E-03
50GO:0009651: response to salt stress1.64E-03
51GO:0010508: positive regulation of autophagy1.71E-03
52GO:0044206: UMP salvage1.71E-03
53GO:0006646: phosphatidylethanolamine biosynthetic process1.71E-03
54GO:0009687: abscisic acid metabolic process1.71E-03
55GO:0015743: malate transport1.71E-03
56GO:0048442: sepal development1.71E-03
57GO:0009765: photosynthesis, light harvesting1.71E-03
58GO:2000306: positive regulation of photomorphogenesis1.71E-03
59GO:0030104: water homeostasis1.71E-03
60GO:1901409: positive regulation of phosphorylation of RNA polymerase II C-terminal domain1.71E-03
61GO:0010600: regulation of auxin biosynthetic process1.71E-03
62GO:0016926: protein desumoylation2.19E-03
63GO:0043097: pyrimidine nucleoside salvage2.19E-03
64GO:0006814: sodium ion transport2.34E-03
65GO:0006206: pyrimidine nucleobase metabolic process2.70E-03
66GO:0009635: response to herbicide2.70E-03
67GO:0031053: primary miRNA processing2.70E-03
68GO:0045962: positive regulation of development, heterochronic2.70E-03
69GO:0045040: protein import into mitochondrial outer membrane2.70E-03
70GO:0009414: response to water deprivation2.94E-03
71GO:0009861: jasmonic acid and ethylene-dependent systemic resistance3.24E-03
72GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity3.24E-03
73GO:0045737: positive regulation of cyclin-dependent protein serine/threonine kinase activity3.24E-03
74GO:0010244: response to low fluence blue light stimulus by blue low-fluence system3.24E-03
75GO:0010286: heat acclimation3.44E-03
76GO:0080111: DNA demethylation3.82E-03
77GO:0010038: response to metal ion3.82E-03
78GO:0010161: red light signaling pathway3.82E-03
79GO:0098869: cellular oxidant detoxification3.82E-03
80GO:0048437: floral organ development3.82E-03
81GO:0006355: regulation of transcription, DNA-templated4.39E-03
82GO:0009415: response to water4.44E-03
83GO:0010078: maintenance of root meristem identity4.44E-03
84GO:0009704: de-etiolation4.44E-03
85GO:0032508: DNA duplex unwinding4.44E-03
86GO:0006102: isocitrate metabolic process4.44E-03
87GO:0009061: anaerobic respiration4.44E-03
88GO:0010928: regulation of auxin mediated signaling pathway4.44E-03
89GO:0007165: signal transduction4.44E-03
90GO:0009819: drought recovery4.44E-03
91GO:0015995: chlorophyll biosynthetic process4.55E-03
92GO:0009817: defense response to fungus, incompatible interaction5.04E-03
93GO:0001510: RNA methylation5.08E-03
94GO:0010099: regulation of photomorphogenesis5.08E-03
95GO:0009827: plant-type cell wall modification5.08E-03
96GO:0006511: ubiquitin-dependent protein catabolic process5.12E-03
97GO:0000160: phosphorelay signal transduction system5.30E-03
98GO:0006811: ion transport5.56E-03
99GO:0090333: regulation of stomatal closure5.75E-03
100GO:0046916: cellular transition metal ion homeostasis5.75E-03
101GO:0009631: cold acclimation5.83E-03
102GO:0010043: response to zinc ion5.83E-03
103GO:0010119: regulation of stomatal movement5.83E-03
104GO:0045087: innate immune response6.39E-03
105GO:0090332: stomatal closure6.46E-03
106GO:0048354: mucilage biosynthetic process involved in seed coat development6.46E-03
107GO:0010468: regulation of gene expression6.64E-03
108GO:0048441: petal development7.20E-03
109GO:0009641: shade avoidance7.20E-03
110GO:0010162: seed dormancy process7.20E-03
111GO:0055062: phosphate ion homeostasis7.20E-03
112GO:0006816: calcium ion transport7.96E-03
113GO:0009640: photomorphogenesis8.24E-03
114GO:0016925: protein sumoylation8.75E-03
115GO:0006626: protein targeting to mitochondrion9.57E-03
116GO:0009718: anthocyanin-containing compound biosynthetic process9.57E-03
117GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process9.57E-03
118GO:0009735: response to cytokinin9.94E-03
119GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process9.99E-03
120GO:0009266: response to temperature stimulus1.04E-02
121GO:0048440: carpel development1.04E-02
122GO:0007049: cell cycle1.06E-02
123GO:0009738: abscisic acid-activated signaling pathway1.08E-02
124GO:0019853: L-ascorbic acid biosynthetic process1.13E-02
125GO:0090351: seedling development1.13E-02
126GO:0010030: positive regulation of seed germination1.13E-02
127GO:0035556: intracellular signal transduction1.24E-02
128GO:0006406: mRNA export from nucleus1.31E-02
129GO:0016575: histone deacetylation1.41E-02
130GO:0006874: cellular calcium ion homeostasis1.41E-02
131GO:0003333: amino acid transmembrane transport1.50E-02
132GO:0009269: response to desiccation1.50E-02
133GO:0045892: negative regulation of transcription, DNA-templated1.56E-02
134GO:0019748: secondary metabolic process1.60E-02
135GO:0055085: transmembrane transport1.63E-02
136GO:0006012: galactose metabolic process1.71E-02
137GO:0071215: cellular response to abscisic acid stimulus1.71E-02
138GO:0009561: megagametogenesis1.81E-02
139GO:0010214: seed coat development1.81E-02
140GO:0048443: stamen development1.81E-02
141GO:0045492: xylan biosynthetic process1.81E-02
142GO:0009789: positive regulation of abscisic acid-activated signaling pathway1.92E-02
143GO:0042147: retrograde transport, endosome to Golgi1.92E-02
144GO:0008284: positive regulation of cell proliferation1.92E-02
145GO:0009408: response to heat1.99E-02
146GO:0042391: regulation of membrane potential2.02E-02
147GO:0010501: RNA secondary structure unwinding2.02E-02
148GO:0046323: glucose import2.14E-02
149GO:0046686: response to cadmium ion2.20E-02
150GO:0042744: hydrogen peroxide catabolic process2.27E-02
151GO:0008654: phospholipid biosynthetic process2.36E-02
152GO:0009556: microsporogenesis2.36E-02
153GO:0000302: response to reactive oxygen species2.48E-02
154GO:0048510: regulation of timing of transition from vegetative to reproductive phase2.48E-02
155GO:0016036: cellular response to phosphate starvation2.56E-02
156GO:1901657: glycosyl compound metabolic process2.72E-02
157GO:0006914: autophagy2.85E-02
158GO:0016125: sterol metabolic process2.85E-02
159GO:0009911: positive regulation of flower development3.23E-02
160GO:0016126: sterol biosynthetic process3.23E-02
161GO:0010029: regulation of seed germination3.36E-02
162GO:0009788: negative regulation of abscisic acid-activated signaling pathway3.36E-02
163GO:0006888: ER to Golgi vesicle-mediated transport3.62E-02
164GO:0048573: photoperiodism, flowering3.62E-02
165GO:0006950: response to stress3.62E-02
166GO:0048481: plant ovule development3.90E-02
167GO:0045944: positive regulation of transcription from RNA polymerase II promoter3.93E-02
168GO:0009813: flavonoid biosynthetic process4.04E-02
169GO:0051301: cell division4.52E-02
170GO:0006970: response to osmotic stress4.56E-02
171GO:0006099: tricarboxylic acid cycle4.76E-02
RankGO TermAdjusted P value
1GO:0080082: esculin beta-glucosidase activity0.00E+00
2GO:0004567: beta-mannosidase activity0.00E+00
3GO:0005358: high-affinity hydrogen:glucose symporter activity0.00E+00
4GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity0.00E+00
5GO:0016428: tRNA (cytosine-5-)-methyltransferase activity0.00E+00
6GO:0047668: amygdalin beta-glucosidase activity0.00E+00
7GO:0019912: cyclin-dependent protein kinase activating kinase activity0.00E+00
8GO:0080083: beta-gentiobiose beta-glucosidase activity0.00E+00
9GO:0005272: sodium channel activity0.00E+00
10GO:0030504: inorganic diphosphate transmembrane transporter activity0.00E+00
11GO:0010349: L-galactose dehydrogenase activity0.00E+00
12GO:0031409: pigment binding3.55E-12
13GO:0016168: chlorophyll binding1.18E-09
14GO:0004096: catalase activity1.05E-05
15GO:0005515: protein binding4.03E-05
16GO:0005253: anion channel activity4.33E-05
17GO:0070006: metalloaminopeptidase activity2.51E-04
18GO:0015185: gamma-aminobutyric acid transmembrane transporter activity2.51E-04
19GO:0033857: diphosphoinositol-pentakisphosphate kinase activity2.51E-04
20GO:0016906: sterol 3-beta-glucosyltransferase activity2.51E-04
21GO:0009679: hexose:proton symporter activity2.51E-04
22GO:0000829: inositol heptakisphosphate kinase activity2.51E-04
23GO:0010013: N-1-naphthylphthalamic acid binding2.51E-04
24GO:0080079: cellobiose glucosidase activity2.51E-04
25GO:0102203: brassicasterol glucosyltransferase activity2.51E-04
26GO:0102202: soladodine glucosyltransferase activity2.51E-04
27GO:0046870: cadmium ion binding2.51E-04
28GO:0000828: inositol hexakisphosphate kinase activity2.51E-04
29GO:0015180: L-alanine transmembrane transporter activity5.53E-04
30GO:0001047: core promoter binding5.53E-04
31GO:0032791: lead ion binding5.53E-04
32GO:0004609: phosphatidylserine decarboxylase activity5.53E-04
33GO:0003994: aconitate hydratase activity5.53E-04
34GO:0004839: ubiquitin activating enzyme activity5.53E-04
35GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity5.53E-04
36GO:0016630: protochlorophyllide reductase activity5.53E-04
37GO:0004565: beta-galactosidase activity7.18E-04
38GO:0046592: polyamine oxidase activity8.99E-04
39GO:0019948: SUMO activating enzyme activity8.99E-04
40GO:0017150: tRNA dihydrouridine synthase activity8.99E-04
41GO:0000285: 1-phosphatidylinositol-3-phosphate 5-kinase activity1.28E-03
42GO:0015181: arginine transmembrane transporter activity1.28E-03
43GO:0015189: L-lysine transmembrane transporter activity1.28E-03
44GO:0048027: mRNA 5'-UTR binding1.28E-03
45GO:0004707: MAP kinase activity1.34E-03
46GO:0042277: peptide binding1.71E-03
47GO:0004845: uracil phosphoribosyltransferase activity1.71E-03
48GO:0005313: L-glutamate transmembrane transporter activity1.71E-03
49GO:0045300: acyl-[acyl-carrier-protein] desaturase activity2.19E-03
50GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen2.19E-03
51GO:0016929: SUMO-specific protease activity2.19E-03
52GO:0010294: abscisic acid glucosyltransferase activity2.19E-03
53GO:0015145: monosaccharide transmembrane transporter activity2.19E-03
54GO:0008641: small protein activating enzyme activity2.19E-03
55GO:0000293: ferric-chelate reductase activity2.70E-03
56GO:0005247: voltage-gated chloride channel activity2.70E-03
57GO:0004629: phospholipase C activity2.70E-03
58GO:0015562: efflux transmembrane transporter activity2.70E-03
59GO:0000156: phosphorelay response regulator activity3.05E-03
60GO:0005261: cation channel activity3.24E-03
61GO:0004435: phosphatidylinositol phospholipase C activity3.24E-03
62GO:0004849: uridine kinase activity3.24E-03
63GO:0009881: photoreceptor activity3.82E-03
64GO:0015140: malate transmembrane transporter activity3.82E-03
65GO:0004033: aldo-keto reductase (NADP) activity4.44E-03
66GO:0001104: RNA polymerase II transcription cofactor activity5.08E-03
67GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity5.08E-03
68GO:0005267: potassium channel activity5.08E-03
69GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)5.08E-03
70GO:0005351: sugar:proton symporter activity5.15E-03
71GO:0004693: cyclin-dependent protein serine/threonine kinase activity5.56E-03
72GO:0000989: transcription factor activity, transcription factor binding5.75E-03
73GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity5.75E-03
74GO:0050897: cobalt ion binding5.83E-03
75GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity7.20E-03
76GO:0004177: aminopeptidase activity7.96E-03
77GO:0047372: acylglycerol lipase activity7.96E-03
78GO:0008168: methyltransferase activity8.81E-03
79GO:0005315: inorganic phosphate transmembrane transporter activity9.57E-03
80GO:0005262: calcium channel activity9.57E-03
81GO:0008131: primary amine oxidase activity1.04E-02
82GO:0031624: ubiquitin conjugating enzyme binding1.04E-02
83GO:0004175: endopeptidase activity1.04E-02
84GO:0004970: ionotropic glutamate receptor activity1.13E-02
85GO:0005217: intracellular ligand-gated ion channel activity1.13E-02
86GO:0030552: cAMP binding1.13E-02
87GO:0030553: cGMP binding1.13E-02
88GO:0003712: transcription cofactor activity1.13E-02
89GO:0061630: ubiquitin protein ligase activity1.30E-02
90GO:0004407: histone deacetylase activity1.31E-02
91GO:0008324: cation transmembrane transporter activity1.41E-02
92GO:0051087: chaperone binding1.41E-02
93GO:0046872: metal ion binding1.41E-02
94GO:0005216: ion channel activity1.41E-02
95GO:0080043: quercetin 3-O-glucosyltransferase activity1.45E-02
96GO:0080044: quercetin 7-O-glucosyltransferase activity1.45E-02
97GO:0019706: protein-cysteine S-palmitoyltransferase activity1.50E-02
98GO:0008270: zinc ion binding1.67E-02
99GO:0004842: ubiquitin-protein transferase activity1.79E-02
100GO:0008514: organic anion transmembrane transporter activity1.81E-02
101GO:0005249: voltage-gated potassium channel activity2.02E-02
102GO:0030551: cyclic nucleotide binding2.02E-02
103GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.05E-02
104GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity2.14E-02
105GO:0015144: carbohydrate transmembrane transporter activity2.38E-02
106GO:0015297: antiporter activity2.63E-02
107GO:0102483: scopolin beta-glucosidase activity3.62E-02
108GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity3.90E-02
109GO:0003697: single-stranded DNA binding4.61E-02
110GO:0003993: acid phosphatase activity4.76E-02
111GO:0008422: beta-glucosidase activity4.90E-02
RankGO TermAdjusted P value
1GO:0030076: light-harvesting complex2.41E-10
2GO:0009522: photosystem I7.51E-09
3GO:0010287: plastoglobule1.54E-08
4GO:0009523: photosystem II4.35E-07
5GO:0009534: chloroplast thylakoid7.78E-06
6GO:0009579: thylakoid5.20E-05
7GO:0009941: chloroplast envelope1.80E-04
8GO:0009535: chloroplast thylakoid membrane5.78E-04
9GO:0016021: integral component of membrane8.88E-04
10GO:0005777: peroxisome1.00E-03
11GO:0042651: thylakoid membrane1.22E-03
12GO:0010445: nuclear dicing body1.71E-03
13GO:0032586: protein storage vacuole membrane1.71E-03
14GO:0009517: PSII associated light-harvesting complex II1.71E-03
15GO:0016607: nuclear speck2.18E-03
16GO:0070847: core mediator complex2.70E-03
17GO:0030127: COPII vesicle coat2.70E-03
18GO:0034707: chloride channel complex2.70E-03
19GO:0000151: ubiquitin ligase complex5.04E-03
20GO:0000326: protein storage vacuole5.08E-03
21GO:0000307: cyclin-dependent protein kinase holoenzyme complex5.08E-03
22GO:0005742: mitochondrial outer membrane translocase complex5.08E-03
23GO:0031090: organelle membrane5.75E-03
24GO:0005680: anaphase-promoting complex5.75E-03
25GO:0010494: cytoplasmic stress granule5.75E-03
26GO:0005618: cell wall6.77E-03
27GO:0005938: cell cortex9.57E-03
28GO:0031966: mitochondrial membrane1.04E-02
29GO:0016020: membrane1.47E-02
30GO:0005741: mitochondrial outer membrane1.50E-02
31GO:0005744: mitochondrial inner membrane presequence translocase complex1.81E-02
32GO:0009506: plasmodesma2.35E-02
33GO:0031965: nuclear membrane2.36E-02
34GO:0005634: nucleus2.39E-02
35GO:0016592: mediator complex2.60E-02
36GO:0000932: P-body3.23E-02
37GO:0005667: transcription factor complex3.49E-02
38GO:0048046: apoplast3.68E-02
39GO:0022626: cytosolic ribosome3.85E-02
40GO:0009707: chloroplast outer membrane3.90E-02
41GO:0000786: nucleosome4.46E-02
42GO:0009505: plant-type cell wall4.50E-02
43GO:0005819: spindle4.90E-02
Gene type



Gene DE type