gene detail

Gene description

TAIR ID: AT1G06040

Short description: B-box zinc finger family protein

Pathogen responsiveness: 0.03

General responsiveness: -0.60

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G019335

Wheat:

TA.5600.2.S1_A_AT

GO biological process

seedling development, response to salt stress, regulation of transcription, DNA-templated, photoperiodism, flowering, positive regulation of shade avoidance, response to karrikin, vegetative to reproductive phase transition of meristem, photomorphogenesis, transcription, response to light stimulus

GO cellular component

nucleus

GO molecular function

transcription cofactor activity, protein binding, transcription factor activity, sequence-specific DNA binding, zinc ion binding

Protein domain

Pfam	PF00643, B-box zinc finger
SMART	SM00336, BBOX

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT3G14230, AT2G43010

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 5

click to view PPI network

Coexpression network

GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE13739_EDS16_GO  view
GSE26679_EDR1_GC  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

14 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE13739	Col, WT, control 0 h	Col, WT, G.orontii 6 h	-1.82	3.19E-10
GSE13739	Col, eds, control 0 h	Col, eds, G.orontii 6 h	-1.86	1.77E-10
GSE17464	Penta, control	Penta, PstDC3000 12 h	-1.55	5.66E-03
GSE17464	Penta, control	Penta, Flg22 2 h	-1.57	4.55E-03
GSE26679	Col, WT, GC 0 h	Col, WT, GC 18 h	-2.57	9.23E-14
GSE26679	Col, WT, GC 0 h	Col, WT, GC 36 h	-3.64	4.00E-17
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 18 h	-2.53	1.05E-13
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	-3.22	4.17E-16
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-4.14	6.24E-17
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-5.79	2.05E-18
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-2.05	3.14E-13
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-3.11	5.86E-04
GSE5520	Col, WT, control 10 h	Col, WT, Cor- hrpS- 10 h	-2.26	4.28E-02
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	-2.18	6.43E-04