GO Enrichment Analysis of Co-expressed Genes with
AT1G06040
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1903428: positive regulation of reactive oxygen species biosynthetic process | 0.00E+00 |
| 2 | GO:0016118: carotenoid catabolic process | 0.00E+00 |
| 3 | GO:0015717: triose phosphate transport | 0.00E+00 |
| 4 | GO:0015979: photosynthesis | 2.65E-13 |
| 5 | GO:0009768: photosynthesis, light harvesting in photosystem I | 1.06E-12 |
| 6 | GO:0018298: protein-chromophore linkage | 1.55E-10 |
| 7 | GO:0009769: photosynthesis, light harvesting in photosystem II | 2.48E-10 |
| 8 | GO:0009645: response to low light intensity stimulus | 2.48E-10 |
| 9 | GO:0009644: response to high light intensity | 1.03E-09 |
| 10 | GO:0010207: photosystem II assembly | 1.09E-08 |
| 11 | GO:0035304: regulation of protein dephosphorylation | 1.97E-07 |
| 12 | GO:0010206: photosystem II repair | 2.98E-07 |
| 13 | GO:0010114: response to red light | 2.66E-06 |
| 14 | GO:0009269: response to desiccation | 3.92E-06 |
| 15 | GO:0042549: photosystem II stabilization | 9.15E-06 |
| 16 | GO:0010196: nonphotochemical quenching | 1.82E-05 |
| 17 | GO:0006098: pentose-phosphate shunt | 3.87E-05 |
| 18 | GO:0010218: response to far red light | 4.42E-05 |
| 19 | GO:0010205: photoinhibition | 4.74E-05 |
| 20 | GO:0051775: response to redox state | 5.79E-05 |
| 21 | GO:0019684: photosynthesis, light reaction | 6.78E-05 |
| 22 | GO:0009416: response to light stimulus | 6.82E-05 |
| 23 | GO:0006094: gluconeogenesis | 9.21E-05 |
| 24 | GO:0006729: tetrahydrobiopterin biosynthetic process | 1.41E-04 |
| 25 | GO:0016121: carotene catabolic process | 1.41E-04 |
| 26 | GO:0016124: xanthophyll catabolic process | 1.41E-04 |
| 27 | GO:0035436: triose phosphate transmembrane transport | 2.40E-04 |
| 28 | GO:0090391: granum assembly | 2.40E-04 |
| 29 | GO:0071484: cellular response to light intensity | 3.49E-04 |
| 30 | GO:0006107: oxaloacetate metabolic process | 3.49E-04 |
| 31 | GO:0042823: pyridoxal phosphate biosynthetic process | 3.49E-04 |
| 32 | GO:0006734: NADH metabolic process | 4.66E-04 |
| 33 | GO:0015976: carbon utilization | 4.66E-04 |
| 34 | GO:0009765: photosynthesis, light harvesting | 4.66E-04 |
| 35 | GO:0010600: regulation of auxin biosynthetic process | 4.66E-04 |
| 36 | GO:0015713: phosphoglycerate transport | 4.66E-04 |
| 37 | GO:0030104: water homeostasis | 4.66E-04 |
| 38 | GO:0006021: inositol biosynthetic process | 4.66E-04 |
| 39 | GO:0035434: copper ion transmembrane transport | 5.92E-04 |
| 40 | GO:0016123: xanthophyll biosynthetic process | 5.92E-04 |
| 41 | GO:0009635: response to herbicide | 7.24E-04 |
| 42 | GO:0009643: photosynthetic acclimation | 7.24E-04 |
| 43 | GO:0050665: hydrogen peroxide biosynthetic process | 7.24E-04 |
| 44 | GO:0010264: myo-inositol hexakisphosphate biosynthetic process | 7.24E-04 |
| 45 | GO:0009854: oxidative photosynthetic carbon pathway | 8.63E-04 |
| 46 | GO:0071470: cellular response to osmotic stress | 8.63E-04 |
| 47 | GO:0010244: response to low fluence blue light stimulus by blue low-fluence system | 8.63E-04 |
| 48 | GO:0009637: response to blue light | 8.97E-04 |
| 49 | GO:1900057: positive regulation of leaf senescence | 1.01E-03 |
| 50 | GO:0010928: regulation of auxin mediated signaling pathway | 1.16E-03 |
| 51 | GO:0030091: protein repair | 1.16E-03 |
| 52 | GO:0071482: cellular response to light stimulus | 1.32E-03 |
| 53 | GO:0090333: regulation of stomatal closure | 1.48E-03 |
| 54 | GO:0042742: defense response to bacterium | 1.54E-03 |
| 55 | GO:0006096: glycolytic process | 1.79E-03 |
| 56 | GO:0009688: abscisic acid biosynthetic process | 1.83E-03 |
| 57 | GO:0009698: phenylpropanoid metabolic process | 2.02E-03 |
| 58 | GO:0009773: photosynthetic electron transport in photosystem I | 2.02E-03 |
| 59 | GO:0005983: starch catabolic process | 2.21E-03 |
| 60 | GO:0006108: malate metabolic process | 2.41E-03 |
| 61 | GO:0009409: response to cold | 2.43E-03 |
| 62 | GO:0006302: double-strand break repair | 2.62E-03 |
| 63 | GO:0006825: copper ion transport | 3.49E-03 |
| 64 | GO:0048511: rhythmic process | 3.72E-03 |
| 65 | GO:0051321: meiotic cell cycle | 3.72E-03 |
| 66 | GO:0009693: ethylene biosynthetic process | 4.20E-03 |
| 67 | GO:0071215: cellular response to abscisic acid stimulus | 4.20E-03 |
| 68 | GO:0010182: sugar mediated signaling pathway | 5.21E-03 |
| 69 | GO:0006814: sodium ion transport | 5.48E-03 |
| 70 | GO:0008654: phospholipid biosynthetic process | 5.75E-03 |
| 71 | GO:0071554: cell wall organization or biogenesis | 6.02E-03 |
| 72 | GO:0048235: pollen sperm cell differentiation | 6.31E-03 |
| 73 | GO:0080167: response to karrikin | 7.02E-03 |
| 74 | GO:0051607: defense response to virus | 7.47E-03 |
| 75 | GO:0010027: thylakoid membrane organization | 7.78E-03 |
| 76 | GO:0015995: chlorophyll biosynthetic process | 8.71E-03 |
| 77 | GO:0016311: dephosphorylation | 9.03E-03 |
| 78 | GO:0006811: ion transport | 1.00E-02 |
| 79 | GO:0010119: regulation of stomatal movement | 1.04E-02 |
| 80 | GO:0009408: response to heat | 1.04E-02 |
| 81 | GO:0006099: tricarboxylic acid cycle | 1.14E-02 |
| 82 | GO:0034599: cellular response to oxidative stress | 1.14E-02 |
| 83 | GO:0042542: response to hydrogen peroxide | 1.28E-02 |
| 84 | GO:0009585: red, far-red light phototransduction | 1.63E-02 |
| 85 | GO:0055114: oxidation-reduction process | 1.71E-02 |
| 86 | GO:0009624: response to nematode | 2.10E-02 |
| 87 | GO:0016036: cellular response to phosphate starvation | 2.94E-02 |
| 88 | GO:0007623: circadian rhythm | 3.09E-02 |
| 89 | GO:0009414: response to water deprivation | 3.65E-02 |
| 90 | GO:0006979: response to oxidative stress | 3.76E-02 |
| 91 | GO:0009733: response to auxin | 4.19E-02 |
| 92 | GO:0006970: response to osmotic stress | 4.45E-02 |
| 93 | GO:0009723: response to ethylene | 4.68E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009540: zeaxanthin epoxidase [overall] activity | 0.00E+00 |
| 2 | GO:0030504: inorganic diphosphate transmembrane transporter activity | 0.00E+00 |
| 3 | GO:0046554: malate dehydrogenase (NADP+) activity | 0.00E+00 |
| 4 | GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity | 0.00E+00 |
| 5 | GO:0010242: oxygen evolving activity | 0.00E+00 |
| 6 | GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors | 0.00E+00 |
| 7 | GO:0031409: pigment binding | 5.06E-13 |
| 8 | GO:0016168: chlorophyll binding | 7.62E-11 |
| 9 | GO:0004332: fructose-bisphosphate aldolase activity | 9.15E-06 |
| 10 | GO:0071949: FAD binding | 3.87E-05 |
| 11 | GO:0008746: NAD(P)+ transhydrogenase activity | 5.79E-05 |
| 12 | GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity | 5.79E-05 |
| 13 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 5.79E-05 |
| 14 | GO:0008266: poly(U) RNA binding | 1.06E-04 |
| 15 | GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity | 1.41E-04 |
| 16 | GO:0004512: inositol-3-phosphate synthase activity | 1.41E-04 |
| 17 | GO:0071917: triose-phosphate transmembrane transporter activity | 2.40E-04 |
| 18 | GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity | 3.49E-04 |
| 19 | GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity | 3.49E-04 |
| 20 | GO:0016851: magnesium chelatase activity | 3.49E-04 |
| 21 | GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity | 3.49E-04 |
| 22 | GO:0008891: glycolate oxidase activity | 4.66E-04 |
| 23 | GO:0015120: phosphoglycerate transmembrane transporter activity | 4.66E-04 |
| 24 | GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity | 5.92E-04 |
| 25 | GO:0016615: malate dehydrogenase activity | 7.24E-04 |
| 26 | GO:0000293: ferric-chelate reductase activity | 7.24E-04 |
| 27 | GO:0033743: peptide-methionine (R)-S-oxide reductase activity | 8.63E-04 |
| 28 | GO:0030060: L-malate dehydrogenase activity | 8.63E-04 |
| 29 | GO:0005375: copper ion transmembrane transporter activity | 1.32E-03 |
| 30 | GO:0046872: metal ion binding | 1.33E-03 |
| 31 | GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity | 1.65E-03 |
| 32 | GO:0005315: inorganic phosphate transmembrane transporter activity | 2.41E-03 |
| 33 | GO:0004089: carbonate dehydratase activity | 2.41E-03 |
| 34 | GO:0031072: heat shock protein binding | 2.41E-03 |
| 35 | GO:0003954: NADH dehydrogenase activity | 3.26E-03 |
| 36 | GO:0008408: 3'-5' exonuclease activity | 3.72E-03 |
| 37 | GO:0008514: organic anion transmembrane transporter activity | 4.44E-03 |
| 38 | GO:0003756: protein disulfide isomerase activity | 4.44E-03 |
| 39 | GO:0042802: identical protein binding | 4.66E-03 |
| 40 | GO:0010181: FMN binding | 5.48E-03 |
| 41 | GO:0005509: calcium ion binding | 7.04E-03 |
| 42 | GO:0016413: O-acetyltransferase activity | 7.47E-03 |
| 43 | GO:0030145: manganese ion binding | 1.04E-02 |
| 44 | GO:0016491: oxidoreductase activity | 1.11E-02 |
| 45 | GO:0004519: endonuclease activity | 1.13E-02 |
| 46 | GO:0003993: acid phosphatase activity | 1.14E-02 |
| 47 | GO:0004185: serine-type carboxypeptidase activity | 1.32E-02 |
| 48 | GO:0015293: symporter activity | 1.44E-02 |
| 49 | GO:0005198: structural molecule activity | 1.44E-02 |
| 50 | GO:0016874: ligase activity | 2.01E-02 |
| 51 | GO:0051082: unfolded protein binding | 2.10E-02 |
| 52 | GO:0016829: lyase activity | 2.60E-02 |
| 53 | GO:0005515: protein binding | 2.65E-02 |
| 54 | GO:0015144: carbohydrate transmembrane transporter activity | 2.80E-02 |
| 55 | GO:0015297: antiporter activity | 2.99E-02 |
| 56 | GO:0005351: sugar:proton symporter activity | 3.04E-02 |
| 57 | GO:0003743: translation initiation factor activity | 3.46E-02 |
| 58 | GO:0003824: catalytic activity | 4.09E-02 |
| 59 | GO:0004497: monooxygenase activity | 4.92E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009579: thylakoid | 3.85E-24 |
| 2 | GO:0009534: chloroplast thylakoid | 2.44E-22 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 4.64E-19 |
| 4 | GO:0010287: plastoglobule | 7.01E-18 |
| 5 | GO:0009507: chloroplast | 4.39E-17 |
| 6 | GO:0009522: photosystem I | 1.11E-11 |
| 7 | GO:0009941: chloroplast envelope | 3.09E-11 |
| 8 | GO:0030076: light-harvesting complex | 7.95E-11 |
| 9 | GO:0009570: chloroplast stroma | 3.36E-09 |
| 10 | GO:0009517: PSII associated light-harvesting complex II | 6.74E-09 |
| 11 | GO:0030095: chloroplast photosystem II | 1.09E-08 |
| 12 | GO:0031977: thylakoid lumen | 4.16E-08 |
| 13 | GO:0009523: photosystem II | 1.76E-07 |
| 14 | GO:0009543: chloroplast thylakoid lumen | 5.70E-07 |
| 15 | GO:0009654: photosystem II oxygen evolving complex | 3.31E-06 |
| 16 | GO:0019898: extrinsic component of membrane | 1.20E-05 |
| 17 | GO:0000791: euchromatin | 5.79E-05 |
| 18 | GO:0009783: photosystem II antenna complex | 5.79E-05 |
| 19 | GO:0009515: granal stacked thylakoid | 5.79E-05 |
| 20 | GO:0043036: starch grain | 1.41E-04 |
| 21 | GO:0031304: intrinsic component of mitochondrial inner membrane | 1.41E-04 |
| 22 | GO:0030870: Mre11 complex | 1.41E-04 |
| 23 | GO:0010007: magnesium chelatase complex | 2.40E-04 |
| 24 | GO:0055035: plastid thylakoid membrane | 5.92E-04 |
| 25 | GO:0000795: synaptonemal complex | 5.92E-04 |
| 26 | GO:0048046: apoplast | 6.99E-04 |
| 27 | GO:0009538: photosystem I reaction center | 1.16E-03 |
| 28 | GO:0008180: COP9 signalosome | 1.48E-03 |
| 29 | GO:0042651: thylakoid membrane | 3.49E-03 |
| 30 | GO:0016020: membrane | 3.77E-03 |
| 31 | GO:0016021: integral component of membrane | 4.79E-03 |
| 32 | GO:0000785: chromatin | 6.31E-03 |
| 33 | GO:0031969: chloroplast membrane | 7.02E-03 |
| 34 | GO:0019005: SCF ubiquitin ligase complex | 9.36E-03 |
| 35 | GO:0000502: proteasome complex | 1.63E-02 |
| 36 | GO:0022626: cytosolic ribosome | 1.77E-02 |
| 37 | GO:0009706: chloroplast inner membrane | 2.10E-02 |
| 38 | GO:0005777: peroxisome | 2.12E-02 |
| 39 | GO:0005774: vacuolar membrane | 3.73E-02 |