Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G06040

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0030644: cellular chloride ion homeostasis0.00E+00
2GO:1903508: positive regulation of nucleic acid-templated transcription0.00E+00
3GO:1903428: positive regulation of reactive oxygen species biosynthetic process0.00E+00
4GO:0070584: mitochondrion morphogenesis0.00E+00
5GO:0009768: photosynthesis, light harvesting in photosystem I4.87E-11
6GO:0009645: response to low light intensity stimulus7.56E-11
7GO:0018298: protein-chromophore linkage3.19E-09
8GO:0009644: response to high light intensity1.58E-08
9GO:0009416: response to light stimulus1.15E-06
10GO:0010600: regulation of auxin biosynthetic process1.81E-06
11GO:0015979: photosynthesis2.69E-06
12GO:0010244: response to low fluence blue light stimulus by blue low-fluence system6.94E-06
13GO:0009769: photosynthesis, light harvesting in photosystem II9.64E-06
14GO:0007623: circadian rhythm1.16E-05
15GO:0010928: regulation of auxin mediated signaling pathway1.29E-05
16GO:0010114: response to red light3.71E-05
17GO:0015812: gamma-aminobutyric acid transport3.90E-05
18GO:1902884: positive regulation of response to oxidative stress9.72E-05
19GO:0006883: cellular sodium ion homeostasis9.72E-05
20GO:0010017: red or far-red light signaling pathway1.20E-04
21GO:1901562: response to paraquat1.68E-04
22GO:0009409: response to cold1.87E-04
23GO:1901002: positive regulation of response to salt stress3.33E-04
24GO:0030104: water homeostasis3.33E-04
25GO:0009765: photosynthesis, light harvesting3.33E-04
26GO:2000306: positive regulation of photomorphogenesis3.33E-04
27GO:0016123: xanthophyll biosynthetic process4.25E-04
28GO:0010218: response to far red light4.83E-04
29GO:0045962: positive regulation of development, heterochronic5.22E-04
30GO:0009637: response to blue light5.52E-04
31GO:0044550: secondary metabolite biosynthetic process5.64E-04
32GO:0010161: red light signaling pathway7.28E-04
33GO:0009704: de-etiolation8.37E-04
34GO:0009585: red, far-red light phototransduction9.36E-04
35GO:0010099: regulation of photomorphogenesis9.50E-04
36GO:0009827: plant-type cell wall modification9.50E-04
37GO:0007186: G-protein coupled receptor signaling pathway9.50E-04
38GO:0006351: transcription, DNA-templated9.59E-04
39GO:0090333: regulation of stomatal closure1.07E-03
40GO:0006355: regulation of transcription, DNA-templated1.10E-03
41GO:0048354: mucilage biosynthetic process involved in seed coat development1.19E-03
42GO:0055062: phosphate ion homeostasis1.31E-03
43GO:0009688: abscisic acid biosynthetic process1.31E-03
44GO:0009641: shade avoidance1.31E-03
45GO:0046856: phosphatidylinositol dephosphorylation1.44E-03
46GO:0050826: response to freezing1.72E-03
47GO:0018107: peptidyl-threonine phosphorylation1.72E-03
48GO:0009718: anthocyanin-containing compound biosynthetic process1.72E-03
49GO:0009266: response to temperature stimulus1.86E-03
50GO:0006874: cellular calcium ion homeostasis2.48E-03
51GO:0003333: amino acid transmembrane transport2.64E-03
52GO:0048511: rhythmic process2.64E-03
53GO:0010431: seed maturation2.64E-03
54GO:0009269: response to desiccation2.64E-03
55GO:0009693: ethylene biosynthetic process2.97E-03
56GO:0071215: cellular response to abscisic acid stimulus2.97E-03
57GO:0010182: sugar mediated signaling pathway3.69E-03
58GO:0006814: sodium ion transport3.87E-03
59GO:0080167: response to karrikin4.23E-03
60GO:0000302: response to reactive oxygen species4.26E-03
61GO:0010286: heat acclimation5.05E-03
62GO:0055114: oxidation-reduction process5.53E-03
63GO:0015995: chlorophyll biosynthetic process6.13E-03
64GO:0006629: lipid metabolic process6.23E-03
65GO:0009408: response to heat6.23E-03
66GO:0000160: phosphorelay signal transduction system6.80E-03
67GO:0006811: ion transport7.04E-03
68GO:0007568: aging7.27E-03
69GO:0006865: amino acid transport7.51E-03
70GO:0042542: response to hydrogen peroxide8.99E-03
71GO:0008643: carbohydrate transport9.77E-03
72GO:0009965: leaf morphogenesis1.00E-02
73GO:0009735: response to cytokinin1.01E-02
74GO:0042538: hyperosmotic salinity response1.09E-02
75GO:0035556: intracellular signal transduction1.17E-02
76GO:0009909: regulation of flower development1.23E-02
77GO:0055085: transmembrane transport1.41E-02
78GO:0009624: response to nematode1.46E-02
79GO:0018105: peptidyl-serine phosphorylation1.49E-02
80GO:0009845: seed germination1.81E-02
81GO:0009414: response to water deprivation2.19E-02
82GO:0010468: regulation of gene expression2.45E-02
83GO:0009658: chloroplast organization2.94E-02
84GO:0006970: response to osmotic stress3.10E-02
85GO:0009723: response to ethylene3.27E-02
86GO:0048366: leaf development3.31E-02
87GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.51E-02
88GO:0045892: negative regulation of transcription, DNA-templated3.94E-02
89GO:0009753: response to jasmonic acid4.76E-02
90GO:0009737: response to abscisic acid4.76E-02
RankGO TermAdjusted P value
1GO:0009540: zeaxanthin epoxidase [overall] activity0.00E+00
2GO:0030504: inorganic diphosphate transmembrane transporter activity0.00E+00
3GO:0031409: pigment binding2.63E-11
4GO:0016168: chlorophyll binding1.76E-09
5GO:0015185: gamma-aminobutyric acid transmembrane transporter activity3.90E-05
6GO:0015180: L-alanine transmembrane transporter activity9.72E-05
7GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen1.43E-04
8GO:0015189: L-lysine transmembrane transporter activity2.48E-04
9GO:0015181: arginine transmembrane transporter activity2.48E-04
10GO:0005313: L-glutamate transmembrane transporter activity3.33E-04
11GO:0004930: G-protein coupled receptor activity3.33E-04
12GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen4.25E-04
13GO:0004497: monooxygenase activity5.07E-04
14GO:0015171: amino acid transmembrane transporter activity1.03E-03
15GO:0000989: transcription factor activity, transcription factor binding1.07E-03
16GO:0071949: FAD binding1.07E-03
17GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity1.31E-03
18GO:0047372: acylglycerol lipase activity1.44E-03
19GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity1.58E-03
20GO:0004022: alcohol dehydrogenase (NAD) activity1.72E-03
21GO:0005315: inorganic phosphate transmembrane transporter activity1.72E-03
22GO:0004565: beta-galactosidase activity1.72E-03
23GO:0004970: ionotropic glutamate receptor activity2.01E-03
24GO:0005217: intracellular ligand-gated ion channel activity2.01E-03
25GO:0005351: sugar:proton symporter activity2.18E-03
26GO:0005216: ion channel activity2.48E-03
27GO:0019825: oxygen binding2.61E-03
28GO:0004707: MAP kinase activity2.64E-03
29GO:0008514: organic anion transmembrane transporter activity3.15E-03
30GO:0005506: iron ion binding3.99E-03
31GO:0000156: phosphorelay response regulator activity4.65E-03
32GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen5.46E-03
33GO:0020037: heme binding7.25E-03
34GO:0046872: metal ion binding8.10E-03
35GO:0015293: symporter activity1.00E-02
36GO:0045735: nutrient reservoir activity1.28E-02
37GO:0016874: ligase activity1.40E-02
38GO:0003700: transcription factor activity, sequence-specific DNA binding1.89E-02
39GO:0015144: carbohydrate transmembrane transporter activity1.95E-02
40GO:0015297: antiporter activity2.09E-02
41GO:0005215: transporter activity2.49E-02
42GO:0003677: DNA binding2.61E-02
43GO:0046983: protein dimerization activity3.00E-02
44GO:0005515: protein binding3.60E-02
45GO:0016787: hydrolase activity4.79E-02
46GO:0004519: endonuclease activity4.80E-02
RankGO TermAdjusted P value
1GO:0030076: light-harvesting complex1.89E-11
2GO:0009522: photosystem I3.46E-10
3GO:0010287: plastoglobule2.19E-09
4GO:0009535: chloroplast thylakoid membrane3.78E-08
5GO:0009941: chloroplast envelope6.82E-08
6GO:0009579: thylakoid1.96E-06
7GO:0009523: photosystem II5.03E-06
8GO:0009534: chloroplast thylakoid3.26E-05
9GO:0009898: cytoplasmic side of plasma membrane3.33E-04
10GO:0009517: PSII associated light-harvesting complex II3.33E-04
11GO:0016021: integral component of membrane3.81E-04
12GO:0009507: chloroplast5.03E-04
13GO:0016020: membrane8.38E-04
14GO:0042651: thylakoid membrane2.48E-03
15GO:0031969: chloroplast membrane4.23E-03
16GO:0031966: mitochondrial membrane1.09E-02
17GO:0016607: nuclear speck1.31E-02
18GO:0009706: chloroplast inner membrane1.46E-02
19GO:0005773: vacuole3.35E-02
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Gene type



Gene DE type