co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G06040

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009892: negative regulation of metabolic process	0.00E+00
2	GO:0071311: cellular response to acetate	0.00E+00
3	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
4	GO:0071260: cellular response to mechanical stimulus	0.00E+00
5	GO:0042906: xanthine transport	0.00E+00
6	GO:0009877: nodulation	0.00E+00
7	GO:0046677: response to antibiotic	0.00E+00
8	GO:0010378: temperature compensation of the circadian clock	0.00E+00
9	GO:0030644: cellular chloride ion homeostasis	0.00E+00
10	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
11	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
12	GO:0070584: mitochondrion morphogenesis	0.00E+00
13	GO:0009768: photosynthesis, light harvesting in photosystem I	6.86E-20
14	GO:0018298: protein-chromophore linkage	5.68E-14
15	GO:0015979: photosynthesis	1.84E-13
16	GO:0009645: response to low light intensity stimulus	4.12E-08
17	GO:0010218: response to far red light	2.62E-07
18	GO:0009637: response to blue light	4.09E-07
19	GO:0010114: response to red light	9.13E-07
20	GO:0009644: response to high light intensity	1.17E-06
21	GO:0009409: response to cold	1.89E-06
22	GO:0009769: photosynthesis, light harvesting in photosystem II	4.76E-06
23	GO:0009416: response to light stimulus	8.48E-06
24	GO:0007623: circadian rhythm	3.04E-05
25	GO:0010600: regulation of auxin biosynthetic process	5.52E-05
26	GO:0015995: chlorophyll biosynthetic process	7.13E-05
27	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.74E-04
28	GO:0010196: nonphotochemical quenching	2.27E-04
29	GO:0010928: regulation of auxin mediated signaling pathway	2.87E-04
30	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	2.89E-04
31	GO:0010362: negative regulation of anion channel activity by blue light	2.89E-04
32	GO:0018002: N-terminal peptidyl-glutamic acid acetylation	2.89E-04
33	GO:0015812: gamma-aminobutyric acid transport	2.89E-04
34	GO:0032958: inositol phosphate biosynthetic process	2.89E-04
35	GO:0006475: internal protein amino acid acetylation	2.89E-04
36	GO:0006474: N-terminal protein amino acid acetylation	2.89E-04
37	GO:0017198: N-terminal peptidyl-serine acetylation	2.89E-04
38	GO:0009970: cellular response to sulfate starvation	5.88E-04
39	GO:0015720: allantoin transport	6.34E-04
40	GO:0010155: regulation of proton transport	6.34E-04
41	GO:0006883: cellular sodium ion homeostasis	6.34E-04
42	GO:0048255: mRNA stabilization	6.34E-04
43	GO:0015857: uracil transport	6.34E-04
44	GO:1902884: positive regulation of response to oxidative stress	6.34E-04
45	GO:0030259: lipid glycosylation	6.34E-04
46	GO:0051170: nuclear import	6.34E-04
47	GO:0050992: dimethylallyl diphosphate biosynthetic process	6.34E-04
48	GO:0000160: phosphorelay signal transduction system	8.71E-04
49	GO:0071230: cellular response to amino acid stimulus	1.03E-03
50	GO:0006598: polyamine catabolic process	1.03E-03
51	GO:1901562: response to paraquat	1.03E-03
52	GO:0071705: nitrogen compound transport	1.03E-03
53	GO:0035556: intracellular signal transduction	1.29E-03
54	GO:0042542: response to hydrogen peroxide	1.43E-03
55	GO:0006020: inositol metabolic process	1.47E-03
56	GO:1901000: regulation of response to salt stress	1.47E-03
57	GO:0010601: positive regulation of auxin biosynthetic process	1.47E-03
58	GO:0044211: CTP salvage	1.47E-03
59	GO:0009800: cinnamic acid biosynthetic process	1.47E-03
60	GO:0030100: regulation of endocytosis	1.47E-03
61	GO:0031936: negative regulation of chromatin silencing	1.47E-03
62	GO:1901332: negative regulation of lateral root development	1.47E-03
63	GO:0006874: cellular calcium ion homeostasis	1.49E-03
64	GO:0048511: rhythmic process	1.64E-03
65	GO:0003333: amino acid transmembrane transport	1.64E-03
66	GO:0010017: red or far-red light signaling pathway	1.79E-03
67	GO:0006351: transcription, DNA-templated	1.88E-03
68	GO:0009765: photosynthesis, light harvesting	1.97E-03
69	GO:2000306: positive regulation of photomorphogenesis	1.97E-03
70	GO:1901002: positive regulation of response to salt stress	1.97E-03
71	GO:0015846: polyamine transport	1.97E-03
72	GO:0030104: water homeostasis	1.97E-03
73	GO:0044206: UMP salvage	1.97E-03
74	GO:0055114: oxidation-reduction process	2.13E-03
75	GO:0009585: red, far-red light phototransduction	2.20E-03
76	GO:0070417: cellular response to cold	2.30E-03
77	GO:0016123: xanthophyll biosynthetic process	2.52E-03
78	GO:0048578: positive regulation of long-day photoperiodism, flowering	2.52E-03
79	GO:0043097: pyrimidine nucleoside salvage	2.52E-03
80	GO:0009904: chloroplast accumulation movement	2.52E-03
81	GO:0006461: protein complex assembly	2.52E-03
82	GO:0009737: response to abscisic acid	2.59E-03
83	GO:0009658: chloroplast organization	2.61E-03
84	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.11E-03
85	GO:0045962: positive regulation of development, heterochronic	3.11E-03
86	GO:0006206: pyrimidine nucleobase metabolic process	3.11E-03
87	GO:0000060: protein import into nucleus, translocation	3.11E-03
88	GO:0002238: response to molecule of fungal origin	3.11E-03
89	GO:0009635: response to herbicide	3.11E-03
90	GO:0009723: response to ethylene	3.26E-03
91	GO:0080167: response to karrikin	3.63E-03
92	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	3.74E-03
93	GO:0010077: maintenance of inflorescence meristem identity	3.74E-03
94	GO:0071470: cellular response to osmotic stress	3.74E-03
95	GO:0009903: chloroplast avoidance movement	3.74E-03
96	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	3.74E-03
97	GO:0044550: secondary metabolite biosynthetic process	4.12E-03
98	GO:0010286: heat acclimation	4.24E-03
99	GO:0010161: red light signaling pathway	4.41E-03
100	GO:1900056: negative regulation of leaf senescence	4.41E-03
101	GO:0048437: floral organ development	4.41E-03
102	GO:0080111: DNA demethylation	4.41E-03
103	GO:0042255: ribosome assembly	5.12E-03
104	GO:0010078: maintenance of root meristem identity	5.12E-03
105	GO:0009704: de-etiolation	5.12E-03
106	GO:0010099: regulation of photomorphogenesis	5.87E-03
107	GO:0009827: plant-type cell wall modification	5.87E-03
108	GO:0007186: G-protein coupled receptor signaling pathway	5.87E-03
109	GO:0006355: regulation of transcription, DNA-templated	6.49E-03
110	GO:0009408: response to heat	6.56E-03
111	GO:0010206: photosystem II repair	6.65E-03
112	GO:0034765: regulation of ion transmembrane transport	6.65E-03
113	GO:0090333: regulation of stomatal closure	6.65E-03
114	GO:0010119: regulation of stomatal movement	7.19E-03
115	GO:0009638: phototropism	7.48E-03
116	GO:0030042: actin filament depolymerization	7.48E-03
117	GO:0048354: mucilage biosynthetic process involved in seed coat development	7.48E-03
118	GO:0010380: regulation of chlorophyll biosynthetic process	7.48E-03
119	GO:0009739: response to gibberellin	7.99E-03
120	GO:0010162: seed dormancy process	8.33E-03
121	GO:0055062: phosphate ion homeostasis	8.33E-03
122	GO:0006995: cellular response to nitrogen starvation	8.33E-03
123	GO:0006535: cysteine biosynthetic process from serine	8.33E-03
124	GO:0009688: abscisic acid biosynthetic process	8.33E-03
125	GO:0009641: shade avoidance	8.33E-03
126	GO:0046856: phosphatidylinositol dephosphorylation	9.22E-03
127	GO:0006816: calcium ion transport	9.22E-03
128	GO:0018119: peptidyl-cysteine S-nitrosylation	9.22E-03
129	GO:0030148: sphingolipid biosynthetic process	9.22E-03
130	GO:0016925: protein sumoylation	1.01E-02
131	GO:0008643: carbohydrate transport	1.10E-02
132	GO:0009718: anthocyanin-containing compound biosynthetic process	1.11E-02
133	GO:0009767: photosynthetic electron transport chain	1.11E-02
134	GO:0009785: blue light signaling pathway	1.11E-02
135	GO:0050826: response to freezing	1.11E-02
136	GO:0018107: peptidyl-threonine phosphorylation	1.11E-02
137	GO:0009266: response to temperature stimulus	1.21E-02
138	GO:0010207: photosystem II assembly	1.21E-02
139	GO:0007015: actin filament organization	1.21E-02
140	GO:0000165: MAPK cascade	1.23E-02
141	GO:0042538: hyperosmotic salinity response	1.28E-02
142	GO:0019853: L-ascorbic acid biosynthetic process	1.31E-02
143	GO:0006970: response to osmotic stress	1.33E-02
144	GO:0009735: response to cytokinin	1.37E-02
145	GO:0019344: cysteine biosynthetic process	1.52E-02
146	GO:0009611: response to wounding	1.62E-02
147	GO:0016575: histone deacetylation	1.63E-02
148	GO:0030154: cell differentiation	1.71E-02
149	GO:0010431: seed maturation	1.75E-02
150	GO:0009269: response to desiccation	1.75E-02
151	GO:0009651: response to salt stress	1.93E-02
152	GO:0007165: signal transduction	1.94E-02
153	GO:0006012: galactose metabolic process	1.98E-02
154	GO:0009693: ethylene biosynthetic process	1.98E-02
155	GO:0071215: cellular response to abscisic acid stimulus	1.98E-02
156	GO:0045892: negative regulation of transcription, DNA-templated	2.03E-02
157	GO:0045492: xylan biosynthetic process	2.10E-02
158	GO:0019722: calcium-mediated signaling	2.10E-02
159	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.23E-02
160	GO:0034220: ion transmembrane transport	2.35E-02
161	GO:0010182: sugar mediated signaling pathway	2.48E-02
162	GO:0009058: biosynthetic process	2.59E-02
163	GO:0006629: lipid metabolic process	2.60E-02
164	GO:0042752: regulation of circadian rhythm	2.61E-02
165	GO:0006814: sodium ion transport	2.61E-02
166	GO:0009556: microsporogenesis	2.75E-02
167	GO:0000302: response to reactive oxygen species	2.88E-02
168	GO:0032502: developmental process	3.02E-02
169	GO:0046686: response to cadmium ion	3.13E-02
170	GO:1901657: glycosyl compound metabolic process	3.16E-02
171	GO:0019760: glucosinolate metabolic process	3.31E-02
172	GO:0016126: sterol biosynthetic process	3.75E-02
173	GO:0009911: positive regulation of flower development	3.75E-02
174	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	3.79E-02
175	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	3.90E-02
176	GO:0010029: regulation of seed germination	3.90E-02
177	GO:0016567: protein ubiquitination	3.91E-02
178	GO:0010468: regulation of gene expression	4.04E-02
179	GO:0009414: response to water deprivation	4.26E-02
180	GO:0016311: dephosphorylation	4.37E-02
181	GO:0048481: plant ovule development	4.53E-02
182	GO:0009817: defense response to fungus, incompatible interaction	4.53E-02
183	GO:0009908: flower development	4.65E-02
184	GO:0009813: flavonoid biosynthetic process	4.69E-02
185	GO:0045944: positive regulation of transcription from RNA polymerase II promoter	4.84E-02
186	GO:0006811: ion transport	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
2	GO:0050511: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity	0.00E+00
3	GO:0019912: cyclin-dependent protein kinase activating kinase activity	0.00E+00
4	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
5	GO:0009540: zeaxanthin epoxidase [overall] activity	0.00E+00
6	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
7	GO:0042907: xanthine transmembrane transporter activity	0.00E+00
8	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
9	GO:0080082: esculin beta-glucosidase activity	0.00E+00
10	GO:0004567: beta-mannosidase activity	0.00E+00
11	GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity	0.00E+00
12	GO:0015276: ligand-gated ion channel activity	0.00E+00
13	GO:0015038: glutathione disulfide oxidoreductase activity	0.00E+00
14	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
15	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
16	GO:0031409: pigment binding	3.03E-18
17	GO:0016168: chlorophyll binding	1.76E-14
18	GO:0005515: protein binding	2.15E-04
19	GO:0000829: inositol heptakisphosphate kinase activity	2.89E-04
20	GO:0080079: cellobiose glucosidase activity	2.89E-04
21	GO:0017091: AU-rich element binding	2.89E-04
22	GO:1990189: peptide-serine-N-acetyltransferase activity	2.89E-04
23	GO:0052631: sphingolipid delta-8 desaturase activity	2.89E-04
24	GO:0008066: glutamate receptor activity	2.89E-04
25	GO:0000828: inositol hexakisphosphate kinase activity	2.89E-04
26	GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	2.89E-04
27	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	2.89E-04
28	GO:1990190: peptide-glutamate-N-acetyltransferase activity	2.89E-04
29	GO:0005244: voltage-gated ion channel activity	2.89E-04
30	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	2.89E-04
31	GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor	2.89E-04
32	GO:0046872: metal ion binding	5.38E-04
33	GO:0047216: inositol 3-alpha-galactosyltransferase activity	6.34E-04
34	GO:0016630: protochlorophyllide reductase activity	6.34E-04
35	GO:0015180: L-alanine transmembrane transporter activity	6.34E-04
36	GO:0080045: quercetin 3'-O-glucosyltransferase activity	6.34E-04
37	GO:0005274: allantoin uptake transmembrane transporter activity	6.34E-04
38	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	8.62E-04
39	GO:0046592: polyamine oxidase activity	1.03E-03
40	GO:0019948: SUMO activating enzyme activity	1.03E-03
41	GO:0010277: chlorophyllide a oxygenase [overall] activity	1.03E-03
42	GO:0004096: catalase activity	1.03E-03
43	GO:0004970: ionotropic glutamate receptor activity	1.10E-03
44	GO:0005217: intracellular ligand-gated ion channel activity	1.10E-03
45	GO:0015297: antiporter activity	1.25E-03
46	GO:0009001: serine O-acetyltransferase activity	1.47E-03
47	GO:0015189: L-lysine transmembrane transporter activity	1.47E-03
48	GO:0000254: C-4 methylsterol oxidase activity	1.47E-03
49	GO:0015181: arginine transmembrane transporter activity	1.47E-03
50	GO:0015203: polyamine transmembrane transporter activity	1.47E-03
51	GO:0009882: blue light photoreceptor activity	1.47E-03
52	GO:0004707: MAP kinase activity	1.64E-03
53	GO:0004845: uracil phosphoribosyltransferase activity	1.97E-03
54	GO:0015210: uracil transmembrane transporter activity	1.97E-03
55	GO:0005313: L-glutamate transmembrane transporter activity	1.97E-03
56	GO:0004930: G-protein coupled receptor activity	1.97E-03
57	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	2.52E-03
58	GO:0051538: 3 iron, 4 sulfur cluster binding	2.52E-03
59	GO:0080046: quercetin 4'-O-glucosyltransferase activity	3.11E-03
60	GO:0004629: phospholipase C activity	3.11E-03
61	GO:0004849: uridine kinase activity	3.74E-03
62	GO:0004435: phosphatidylinositol phospholipase C activity	3.74E-03
63	GO:0000156: phosphorelay response regulator activity	3.75E-03
64	GO:0005506: iron ion binding	4.53E-03
65	GO:0004033: aldo-keto reductase (NADP) activity	5.12E-03
66	GO:0005267: potassium channel activity	5.87E-03
67	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	5.87E-03
68	GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity	5.87E-03
69	GO:0071949: FAD binding	6.65E-03
70	GO:0000989: transcription factor activity, transcription factor binding	6.65E-03
71	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	6.65E-03
72	GO:0015174: basic amino acid transmembrane transporter activity	7.48E-03
73	GO:0003993: acid phosphatase activity	8.24E-03
74	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	8.33E-03
75	GO:0047372: acylglycerol lipase activity	9.22E-03
76	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	1.01E-02
77	GO:0003700: transcription factor activity, sequence-specific DNA binding	1.09E-02
78	GO:0051537: 2 iron, 2 sulfur cluster binding	1.10E-02
79	GO:0000155: phosphorelay sensor kinase activity	1.11E-02
80	GO:0005262: calcium channel activity	1.11E-02
81	GO:0003677: DNA binding	1.11E-02
82	GO:0004565: beta-galactosidase activity	1.11E-02
83	GO:0004022: alcohol dehydrogenase (NAD) activity	1.11E-02
84	GO:0005315: inorganic phosphate transmembrane transporter activity	1.11E-02
85	GO:0015293: symporter activity	1.15E-02
86	GO:0008131: primary amine oxidase activity	1.21E-02
87	GO:0004190: aspartic-type endopeptidase activity	1.31E-02
88	GO:0004407: histone deacetylase activity	1.52E-02
89	GO:0008134: transcription factor binding	1.52E-02
90	GO:0015171: amino acid transmembrane transporter activity	1.52E-02
91	GO:0004497: monooxygenase activity	1.59E-02
92	GO:0005216: ion channel activity	1.63E-02
93	GO:0008270: zinc ion binding	1.66E-02
94	GO:0019706: protein-cysteine S-palmitoyltransferase activity	1.75E-02
95	GO:0016874: ligase activity	1.85E-02
96	GO:0008514: organic anion transmembrane transporter activity	2.10E-02
97	GO:0003727: single-stranded RNA binding	2.10E-02
98	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	2.20E-02
99	GO:0008080: N-acetyltransferase activity	2.48E-02
100	GO:0010181: FMN binding	2.61E-02
101	GO:0048038: quinone binding	2.88E-02
102	GO:0020037: heme binding	3.20E-02
103	GO:0005351: sugar:proton symporter activity	3.31E-02
104	GO:0102483: scopolin beta-glucosidase activity	4.21E-02
105	GO:0044212: transcription regulatory region DNA binding	4.41E-02
106	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0009783: photosystem II antenna complex	0.00E+00
2	GO:0009522: photosystem I	6.82E-16
3	GO:0009535: chloroplast thylakoid membrane	1.82E-14
4	GO:0030076: light-harvesting complex	3.96E-14
5	GO:0009534: chloroplast thylakoid	5.70E-14
6	GO:0010287: plastoglobule	6.70E-14
7	GO:0009579: thylakoid	8.20E-13
8	GO:0009941: chloroplast envelope	2.82E-12
9	GO:0016021: integral component of membrane	1.99E-07
10	GO:0009523: photosystem II	7.59E-07
11	GO:0042651: thylakoid membrane	4.42E-06
12	GO:0009898: cytoplasmic side of plasma membrane	5.52E-05
13	GO:0009517: PSII associated light-harvesting complex II	5.52E-05
14	GO:0009507: chloroplast	5.61E-05
15	GO:0016020: membrane	1.83E-04
16	GO:0009538: photosystem I reaction center	2.87E-04
17	GO:0031415: NatA complex	6.34E-04
18	GO:0032586: protein storage vacuole membrane	1.97E-03
19	GO:0030660: Golgi-associated vesicle membrane	1.97E-03
20	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	1.97E-03
21	GO:0005798: Golgi-associated vesicle	3.11E-03
22	GO:0009706: chloroplast inner membrane	3.45E-03
23	GO:0009533: chloroplast stromal thylakoid	4.41E-03
24	GO:0009986: cell surface	4.41E-03
25	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	5.12E-03
26	GO:0000326: protein storage vacuole	5.87E-03
27	GO:0010494: cytoplasmic stress granule	6.65E-03
28	GO:0005765: lysosomal membrane	9.22E-03
29	GO:0031977: thylakoid lumen	9.37E-03
30	GO:0030095: chloroplast photosystem II	1.21E-02
31	GO:0005769: early endosome	1.41E-02
32	GO:0009654: photosystem II oxygen evolving complex	1.63E-02
33	GO:0005777: peroxisome	1.92E-02
34	GO:0015629: actin cytoskeleton	1.98E-02
35	GO:0009543: chloroplast thylakoid lumen	2.46E-02
36	GO:0019898: extrinsic component of membrane	2.75E-02
37	GO:0000932: P-body	3.75E-02
38	GO:0009707: chloroplast outer membrane	4.53E-02
39	GO:0000151: ubiquitin ligase complex	4.53E-02
40	GO:0022626: cytosolic ribosome	4.98E-02