Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G58620

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0019481: L-alanine catabolic process, by transamination0.00E+00
2GO:0032499: detection of peptidoglycan0.00E+00
3GO:2001143: N-methylnicotinate transport0.00E+00
4GO:0002752: cell surface pattern recognition receptor signaling pathway0.00E+00
5GO:0080169: cellular response to boron-containing substance deprivation0.00E+00
6GO:0006005: L-fucose biosynthetic process0.00E+00
7GO:0006990: positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response0.00E+00
8GO:0090352: regulation of nitrate assimilation0.00E+00
9GO:2001142: nicotinate transport0.00E+00
10GO:0019427: acetyl-CoA biosynthetic process from acetate0.00E+00
11GO:0010247: detection of phosphate ion0.00E+00
12GO:0009699: phenylpropanoid biosynthetic process9.10E-08
13GO:0045227: capsule polysaccharide biosynthetic process2.99E-07
14GO:0033358: UDP-L-arabinose biosynthetic process2.99E-07
15GO:0009225: nucleotide-sugar metabolic process1.58E-06
16GO:0010372: positive regulation of gibberellin biosynthetic process3.18E-06
17GO:0000266: mitochondrial fission3.27E-05
18GO:0006468: protein phosphorylation5.10E-05
19GO:0010337: regulation of salicylic acid metabolic process1.09E-04
20GO:0006012: galactose metabolic process1.44E-04
21GO:0009306: protein secretion1.62E-04
22GO:0006744: ubiquinone biosynthetic process1.96E-04
23GO:0007166: cell surface receptor signaling pathway2.40E-04
24GO:0045010: actin nucleation2.48E-04
25GO:0006402: mRNA catabolic process2.48E-04
26GO:1900384: regulation of flavonol biosynthetic process2.63E-04
27GO:0051014: actin filament severing2.63E-04
28GO:0071277: cellular response to calcium ion2.63E-04
29GO:0046244: salicylic acid catabolic process2.63E-04
30GO:0006083: acetate metabolic process2.63E-04
31GO:0009966: regulation of signal transduction2.63E-04
32GO:0042350: GDP-L-fucose biosynthetic process2.63E-04
33GO:0019567: arabinose biosynthetic process2.63E-04
34GO:0010482: regulation of epidermal cell division2.63E-04
35GO:0010113: negative regulation of systemic acquired resistance2.63E-04
36GO:0018920: glyphosate metabolic process2.63E-04
37GO:0080157: regulation of plant-type cell wall organization or biogenesis2.63E-04
38GO:0099636: cytoplasmic streaming2.63E-04
39GO:0032491: detection of molecule of fungal origin2.63E-04
40GO:0002221: pattern recognition receptor signaling pathway5.78E-04
41GO:0046939: nucleotide phosphorylation5.78E-04
42GO:0010155: regulation of proton transport5.78E-04
43GO:0009805: coumarin biosynthetic process5.78E-04
44GO:0009073: aromatic amino acid family biosynthetic process5.92E-04
45GO:0016049: cell growth6.44E-04
46GO:0010200: response to chitin6.62E-04
47GO:0009845: seed germination7.53E-04
48GO:0034605: cellular response to heat8.62E-04
49GO:0045087: innate immune response9.22E-04
50GO:0006556: S-adenosylmethionine biosynthetic process9.39E-04
51GO:0006065: UDP-glucuronate biosynthetic process9.39E-04
52GO:0010447: response to acidic pH9.39E-04
53GO:0052546: cell wall pectin metabolic process9.39E-04
54GO:0070475: rRNA base methylation9.39E-04
55GO:0010165: response to X-ray9.39E-04
56GO:0042351: 'de novo' GDP-L-fucose biosynthetic process9.39E-04
57GO:0090351: seedling development9.62E-04
58GO:0009408: response to heat1.23E-03
59GO:0006986: response to unfolded protein1.34E-03
60GO:0002679: respiratory burst involved in defense response1.34E-03
61GO:0051131: chaperone-mediated protein complex assembly1.34E-03
62GO:0046836: glycolipid transport1.34E-03
63GO:2000114: regulation of establishment of cell polarity1.34E-03
64GO:0009800: cinnamic acid biosynthetic process1.34E-03
65GO:0030100: regulation of endocytosis1.34E-03
66GO:0009399: nitrogen fixation1.34E-03
67GO:0072583: clathrin-dependent endocytosis1.34E-03
68GO:0071323: cellular response to chitin1.34E-03
69GO:0015743: malate transport1.79E-03
70GO:0060548: negative regulation of cell death1.79E-03
71GO:0033320: UDP-D-xylose biosynthetic process1.79E-03
72GO:0051764: actin crosslink formation1.79E-03
73GO:0071219: cellular response to molecule of bacterial origin1.79E-03
74GO:0051567: histone H3-K9 methylation1.79E-03
75GO:1902347: response to strigolactone1.79E-03
76GO:0009809: lignin biosynthetic process1.84E-03
77GO:0010224: response to UV-B1.92E-03
78GO:0006461: protein complex assembly2.29E-03
79GO:0032957: inositol trisphosphate metabolic process2.29E-03
80GO:0043484: regulation of RNA splicing2.29E-03
81GO:0030041: actin filament polymerization2.29E-03
82GO:0046855: inositol phosphate dephosphorylation2.82E-03
83GO:0000470: maturation of LSU-rRNA2.82E-03
84GO:0042732: D-xylose metabolic process2.82E-03
85GO:0048317: seed morphogenesis2.82E-03
86GO:0033365: protein localization to organelle2.82E-03
87GO:0006559: L-phenylalanine catabolic process2.82E-03
88GO:0002229: defense response to oomycetes2.87E-03
89GO:0080167: response to karrikin2.92E-03
90GO:0031047: gene silencing by RNA3.06E-03
91GO:0046777: protein autophosphorylation3.23E-03
92GO:0009423: chorismate biosynthetic process3.40E-03
93GO:0009611: response to wounding3.51E-03
94GO:0042742: defense response to bacterium3.53E-03
95GO:0016579: protein deubiquitination3.90E-03
96GO:0010044: response to aluminum ion4.00E-03
97GO:0006955: immune response4.00E-03
98GO:0051693: actin filament capping4.00E-03
99GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway4.00E-03
100GO:0000338: protein deneddylation4.00E-03
101GO:0009816: defense response to bacterium, incompatible interaction4.37E-03
102GO:0048766: root hair initiation4.65E-03
103GO:2000070: regulation of response to water deprivation4.65E-03
104GO:0048658: anther wall tapetum development4.65E-03
105GO:0009787: regulation of abscisic acid-activated signaling pathway4.65E-03
106GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline4.65E-03
107GO:0009819: drought recovery4.65E-03
108GO:0006605: protein targeting4.65E-03
109GO:1900150: regulation of defense response to fungus4.65E-03
110GO:0030968: endoplasmic reticulum unfolded protein response5.32E-03
111GO:0017004: cytochrome complex assembly5.32E-03
112GO:0009808: lignin metabolic process5.32E-03
113GO:0006972: hyperosmotic response5.32E-03
114GO:0009932: cell tip growth5.32E-03
115GO:0015996: chlorophyll catabolic process5.32E-03
116GO:0008219: cell death5.39E-03
117GO:0009737: response to abscisic acid5.41E-03
118GO:0048589: developmental growth6.03E-03
119GO:0007062: sister chromatid cohesion6.03E-03
120GO:0051865: protein autoubiquitination6.03E-03
121GO:0008202: steroid metabolic process6.77E-03
122GO:0030042: actin filament depolymerization6.77E-03
123GO:0006810: transport7.49E-03
124GO:0048829: root cap development7.54E-03
125GO:0010215: cellulose microfibril organization7.54E-03
126GO:0007064: mitotic sister chromatid cohesion7.54E-03
127GO:0009870: defense response signaling pathway, resistance gene-dependent7.54E-03
128GO:0019538: protein metabolic process7.54E-03
129GO:0006839: mitochondrial transport7.79E-03
130GO:0048765: root hair cell differentiation8.35E-03
131GO:0046856: phosphatidylinositol dephosphorylation8.35E-03
132GO:0010015: root morphogenesis8.35E-03
133GO:0009698: phenylpropanoid metabolic process8.35E-03
134GO:0015770: sucrose transport8.35E-03
135GO:0046686: response to cadmium ion8.40E-03
136GO:0016925: protein sumoylation9.17E-03
137GO:0015706: nitrate transport9.17E-03
138GO:0010152: pollen maturation9.17E-03
139GO:0010105: negative regulation of ethylene-activated signaling pathway9.17E-03
140GO:0050826: response to freezing1.00E-02
141GO:0046274: lignin catabolic process1.00E-02
142GO:0055046: microgametogenesis1.00E-02
143GO:0006302: double-strand break repair1.09E-02
144GO:0007015: actin filament organization1.09E-02
145GO:0006446: regulation of translational initiation1.09E-02
146GO:0070588: calcium ion transmembrane transport1.18E-02
147GO:0046854: phosphatidylinositol phosphorylation1.18E-02
148GO:0010167: response to nitrate1.18E-02
149GO:0005985: sucrose metabolic process1.18E-02
150GO:0009723: response to ethylene1.21E-02
151GO:0034976: response to endoplasmic reticulum stress1.28E-02
152GO:0035556: intracellular signal transduction1.37E-02
153GO:0006487: protein N-linked glycosylation1.38E-02
154GO:0080147: root hair cell development1.38E-02
155GO:0009863: salicylic acid mediated signaling pathway1.38E-02
156GO:0051017: actin filament bundle assembly1.38E-02
157GO:0007010: cytoskeleton organization1.38E-02
158GO:0009651: response to salt stress1.43E-02
159GO:0010026: trichome differentiation1.48E-02
160GO:0006730: one-carbon metabolic process1.68E-02
161GO:0007005: mitochondrion organization1.68E-02
162GO:0031348: negative regulation of defense response1.68E-02
163GO:0040007: growth1.79E-02
164GO:0071215: cellular response to abscisic acid stimulus1.79E-02
165GO:0009686: gibberellin biosynthetic process1.79E-02
166GO:0006817: phosphate ion transport1.90E-02
167GO:0016310: phosphorylation2.01E-02
168GO:0006606: protein import into nucleus2.13E-02
169GO:0042631: cellular response to water deprivation2.13E-02
170GO:0000271: polysaccharide biosynthetic process2.13E-02
171GO:0048868: pollen tube development2.24E-02
172GO:0009960: endosperm development2.24E-02
173GO:0045489: pectin biosynthetic process2.24E-02
174GO:0007059: chromosome segregation2.36E-02
175GO:0009646: response to absence of light2.36E-02
176GO:0048544: recognition of pollen2.36E-02
177GO:0009753: response to jasmonic acid2.37E-02
178GO:0010183: pollen tube guidance2.48E-02
179GO:0006891: intra-Golgi vesicle-mediated transport2.61E-02
180GO:0032502: developmental process2.73E-02
181GO:0016036: cellular response to phosphate starvation2.74E-02
182GO:0010090: trichome morphogenesis2.86E-02
183GO:1901657: glycosyl compound metabolic process2.86E-02
184GO:0016567: protein ubiquitination3.01E-02
185GO:0006357: regulation of transcription from RNA polymerase II promoter3.08E-02
186GO:0010286: heat acclimation3.12E-02
187GO:0009615: response to virus3.39E-02
188GO:0001666: response to hypoxia3.39E-02
189GO:0009617: response to bacterium3.51E-02
190GO:0009788: negative regulation of abscisic acid-activated signaling pathway3.52E-02
191GO:0042128: nitrate assimilation3.66E-02
192GO:0048573: photoperiodism, flowering3.80E-02
193GO:0048481: plant ovule development4.09E-02
194GO:0009817: defense response to fungus, incompatible interaction4.09E-02
195GO:0010311: lateral root formation4.24E-02
196GO:0048767: root hair elongation4.24E-02
197GO:0009813: flavonoid biosynthetic process4.24E-02
198GO:0009832: plant-type cell wall biogenesis4.24E-02
199GO:0009555: pollen development4.42E-02
200GO:0009910: negative regulation of flower development4.53E-02
201GO:0000724: double-strand break repair via homologous recombination4.69E-02
202GO:0016051: carbohydrate biosynthetic process4.84E-02
RankGO TermAdjusted P value
1GO:0090417: N-methylnicotinate transporter activity0.00E+00
2GO:0090416: nicotinate transporter activity0.00E+00
3GO:0005522: profilin binding0.00E+00
4GO:0046409: p-coumarate 3-hydroxylase activity0.00E+00
5GO:0016710: trans-cinnamate 4-monooxygenase activity0.00E+00
6GO:2001080: chitosan binding0.00E+00
7GO:0047734: CDP-glycerol diphosphatase activity0.00E+00
8GO:0005524: ATP binding5.64E-08
9GO:0050373: UDP-arabinose 4-epimerase activity2.99E-07
10GO:0016301: kinase activity4.34E-07
11GO:0003978: UDP-glucose 4-epimerase activity2.31E-06
12GO:0004672: protein kinase activity4.99E-05
13GO:0004674: protein serine/threonine kinase activity8.29E-05
14GO:0009383: rRNA (cytosine-C5-)-methyltransferase activity2.63E-04
15GO:0003866: 3-phosphoshikimate 1-carboxyvinyltransferase activity2.63E-04
16GO:0050577: GDP-L-fucose synthase activity2.63E-04
17GO:0003987: acetate-CoA ligase activity2.63E-04
18GO:0015085: calcium ion transmembrane transporter activity2.63E-04
19GO:0051669: fructan beta-fructosidase activity2.63E-04
20GO:0031219: levanase activity2.63E-04
21GO:1990585: hydroxyproline O-arabinosyltransferase activity5.78E-04
22GO:0015036: disulfide oxidoreductase activity5.78E-04
23GO:0003849: 3-deoxy-7-phosphoheptulonate synthase activity5.78E-04
24GO:0052659: inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity9.39E-04
25GO:0003979: UDP-glucose 6-dehydrogenase activity9.39E-04
26GO:0004478: methionine adenosyltransferase activity9.39E-04
27GO:0045548: phenylalanine ammonia-lyase activity9.39E-04
28GO:0004675: transmembrane receptor protein serine/threonine kinase activity9.77E-04
29GO:0052658: inositol-1,4,5-trisphosphate 5-phosphatase activity1.34E-03
30GO:0017089: glycolipid transporter activity1.34E-03
31GO:0019201: nucleotide kinase activity1.34E-03
32GO:0019789: SUMO transferase activity1.34E-03
33GO:0004445: inositol-polyphosphate 5-phosphatase activity1.34E-03
34GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity1.34E-03
35GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity1.34E-03
36GO:0019706: protein-cysteine S-palmitoyltransferase activity1.43E-03
37GO:0033612: receptor serine/threonine kinase binding1.43E-03
38GO:0000062: fatty-acyl-CoA binding1.79E-03
39GO:0051861: glycolipid binding1.79E-03
40GO:0043015: gamma-tubulin binding1.79E-03
41GO:0005253: anion channel activity1.79E-03
42GO:0019199: transmembrane receptor protein kinase activity1.79E-03
43GO:0047631: ADP-ribose diphosphatase activity2.29E-03
44GO:0002020: protease binding2.29E-03
45GO:0004356: glutamate-ammonia ligase activity2.29E-03
46GO:0005546: phosphatidylinositol-4,5-bisphosphate binding2.29E-03
47GO:0003729: mRNA binding2.48E-03
48GO:0003779: actin binding2.78E-03
49GO:0048040: UDP-glucuronate decarboxylase activity2.82E-03
50GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity2.82E-03
51GO:0016208: AMP binding2.82E-03
52GO:0035673: oligopeptide transmembrane transporter activity2.82E-03
53GO:0004843: thiol-dependent ubiquitin-specific protease activity2.87E-03
54GO:0004518: nuclease activity3.06E-03
55GO:0051015: actin filament binding3.26E-03
56GO:0004656: procollagen-proline 4-dioxygenase activity3.40E-03
57GO:0070403: NAD+ binding3.40E-03
58GO:0004017: adenylate kinase activity3.40E-03
59GO:0004012: phospholipid-translocating ATPase activity3.40E-03
60GO:0005515: protein binding3.73E-03
61GO:0004143: diacylglycerol kinase activity4.00E-03
62GO:0008506: sucrose:proton symporter activity4.00E-03
63GO:0015140: malate transmembrane transporter activity4.00E-03
64GO:0008375: acetylglucosaminyltransferase activity4.61E-03
65GO:0004714: transmembrane receptor protein tyrosine kinase activity4.65E-03
66GO:0052747: sinapyl alcohol dehydrogenase activity4.65E-03
67GO:0004430: 1-phosphatidylinositol 4-kinase activity5.32E-03
68GO:0008142: oxysterol binding5.32E-03
69GO:0004630: phospholipase D activity5.32E-03
70GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity5.32E-03
71GO:0003951: NAD+ kinase activity5.32E-03
72GO:0016207: 4-coumarate-CoA ligase activity6.03E-03
73GO:0008017: microtubule binding6.13E-03
74GO:0004842: ubiquitin-protein transferase activity6.65E-03
75GO:0015112: nitrate transmembrane transporter activity6.77E-03
76GO:0008515: sucrose transmembrane transporter activity8.35E-03
77GO:0045551: cinnamyl-alcohol dehydrogenase activity9.17E-03
78GO:0015198: oligopeptide transporter activity9.17E-03
79GO:0008378: galactosyltransferase activity9.17E-03
80GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity9.17E-03
81GO:0008139: nuclear localization sequence binding1.00E-02
82GO:0031072: heat shock protein binding1.00E-02
83GO:0019888: protein phosphatase regulator activity1.00E-02
84GO:0005388: calcium-transporting ATPase activity1.00E-02
85GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.00E-02
86GO:0003682: chromatin binding1.08E-02
87GO:0008061: chitin binding1.18E-02
88GO:0031418: L-ascorbic acid binding1.38E-02
89GO:0043565: sequence-specific DNA binding1.43E-02
90GO:0016757: transferase activity, transferring glycosyl groups1.47E-02
91GO:0036459: thiol-dependent ubiquitinyl hydrolase activity1.58E-02
92GO:0016874: ligase activity1.60E-02
93GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting1.67E-02
94GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.68E-02
95GO:0051082: unfolded protein binding1.70E-02
96GO:0022891: substrate-specific transmembrane transporter activity1.79E-02
97GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding1.91E-02
98GO:0016758: transferase activity, transferring hexosyl groups2.07E-02
99GO:0003924: GTPase activity2.17E-02
100GO:0030276: clathrin binding2.24E-02
101GO:0008536: Ran GTPase binding2.24E-02
102GO:0001085: RNA polymerase II transcription factor binding2.24E-02
103GO:0005516: calmodulin binding2.32E-02
104GO:0016853: isomerase activity2.36E-02
105GO:0050662: coenzyme binding2.36E-02
106GO:0019901: protein kinase binding2.48E-02
107GO:0015144: carbohydrate transmembrane transporter activity2.55E-02
108GO:0008565: protein transporter activity2.55E-02
109GO:0005525: GTP binding2.65E-02
110GO:0005351: sugar:proton symporter activity2.88E-02
111GO:0044212: transcription regulatory region DNA binding3.59E-02
112GO:0009931: calcium-dependent protein serine/threonine kinase activity3.66E-02
113GO:0042802: identical protein binding3.73E-02
114GO:0030247: polysaccharide binding3.80E-02
115GO:0004683: calmodulin-dependent protein kinase activity3.80E-02
116GO:0102483: scopolin beta-glucosidase activity3.80E-02
117GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.09E-02
118GO:0003824: catalytic activity4.11E-02
119GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding4.53E-02
120GO:0016614: oxidoreductase activity, acting on CH-OH group of donors4.53E-02
121GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors4.84E-02
RankGO TermAdjusted P value
1GO:0016442: RISC complex0.00E+00
2GO:0005886: plasma membrane1.78E-12
3GO:0016021: integral component of membrane1.04E-05
4GO:0048471: perinuclear region of cytoplasm2.60E-05
5GO:0032580: Golgi cisterna membrane2.79E-05
6GO:0005794: Golgi apparatus3.74E-05
7GO:0045334: clathrin-coated endocytic vesicle2.63E-04
8GO:0005911: cell-cell junction2.63E-04
9GO:0010494: cytoplasmic stress granule3.70E-04
10GO:0031314: extrinsic component of mitochondrial inner membrane5.78E-04
11GO:0005768: endosome8.27E-04
12GO:0005783: endoplasmic reticulum8.55E-04
13GO:0009506: plasmodesma1.19E-03
14GO:0016020: membrane1.49E-03
15GO:0005737: cytoplasm1.51E-03
16GO:0005635: nuclear envelope2.01E-03
17GO:0005746: mitochondrial respiratory chain2.29E-03
18GO:0030915: Smc5-Smc6 complex2.29E-03
19GO:0005829: cytosol2.30E-03
20GO:0010008: endosome membrane2.37E-03
21GO:0005789: endoplasmic reticulum membrane2.63E-03
22GO:0009504: cell plate2.68E-03
23GO:0016363: nuclear matrix3.40E-03
24GO:0000932: P-body4.14E-03
25GO:0005743: mitochondrial inner membrane4.73E-03
26GO:0009514: glyoxysome5.32E-03
27GO:0008180: COP9 signalosome6.03E-03
28GO:0005802: trans-Golgi network7.70E-03
29GO:0005884: actin filament8.35E-03
30GO:0090404: pollen tube tip8.35E-03
31GO:0090406: pollen tube8.82E-03
32GO:0005938: cell cortex1.00E-02
33GO:0005795: Golgi stack1.18E-02
34GO:0043234: protein complex1.28E-02
35GO:0005774: vacuolar membrane1.52E-02
36GO:0005741: mitochondrial outer membrane1.58E-02
37GO:0000139: Golgi membrane1.94E-02
38GO:0005623: cell2.19E-02
39GO:0009524: phragmoplast2.25E-02
40GO:0031965: nuclear membrane2.48E-02
41GO:0005788: endoplasmic reticulum lumen3.52E-02
42GO:0005667: transcription factor complex3.66E-02
43GO:0019005: SCF ubiquitin ligase complex4.09E-02
44GO:0009505: plant-type cell wall4.96E-02
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Gene type



Gene DE type