co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G58620

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006592: ornithine biosynthetic process	0.00E+00
2	GO:0006511: ubiquitin-dependent protein catabolic process	1.88E-06
3	GO:1901430: positive regulation of syringal lignin biosynthetic process	3.50E-05
4	GO:0035494: SNARE complex disassembly	3.50E-05
5	GO:0051788: response to misfolded protein	8.78E-05
6	GO:0043617: cellular response to sucrose starvation	1.52E-04
7	GO:0090630: activation of GTPase activity	1.52E-04
8	GO:0010186: positive regulation of cellular defense response	1.52E-04
9	GO:0009646: response to absence of light	1.74E-04
10	GO:0009647: skotomorphogenesis	2.25E-04
11	GO:0030163: protein catabolic process	2.30E-04
12	GO:0046355: mannan catabolic process	3.05E-04
13	GO:0010363: regulation of plant-type hypersensitive response	3.05E-04
14	GO:0006564: L-serine biosynthetic process	3.89E-04
15	GO:0006461: protein complex assembly	3.89E-04
16	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	4.78E-04
17	GO:0043248: proteasome assembly	4.78E-04
18	GO:0048528: post-embryonic root development	6.66E-04
19	GO:0000338: protein deneddylation	6.66E-04
20	GO:0031540: regulation of anthocyanin biosynthetic process	7.68E-04
21	GO:0051603: proteolysis involved in cellular protein catabolic process	8.51E-04
22	GO:0006526: arginine biosynthetic process	8.71E-04
23	GO:0006972: hyperosmotic response	8.71E-04
24	GO:0046685: response to arsenic-containing substance	9.78E-04
25	GO:0090332: stomatal closure	1.09E-03
26	GO:0010072: primary shoot apical meristem specification	1.32E-03
27	GO:0006820: anion transport	1.44E-03
28	GO:0009725: response to hormone	1.57E-03
29	GO:0019762: glucosinolate catabolic process	1.97E-03
30	GO:0030433: ubiquitin-dependent ERAD pathway	2.56E-03
31	GO:0010227: floral organ abscission	2.71E-03
32	GO:0010089: xylem development	2.87E-03
33	GO:0009561: megagametogenesis	2.87E-03
34	GO:0051028: mRNA transport	3.03E-03
35	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	3.03E-03
36	GO:0010051: xylem and phloem pattern formation	3.20E-03
37	GO:0008360: regulation of cell shape	3.36E-03
38	GO:0061025: membrane fusion	3.53E-03
39	GO:0048825: cotyledon development	3.70E-03
40	GO:0009733: response to auxin	3.95E-03
41	GO:0006914: autophagy	4.42E-03
42	GO:0016579: protein deubiquitination	4.80E-03
43	GO:0010311: lateral root formation	6.19E-03
44	GO:0006811: ion transport	6.40E-03
45	GO:0010043: response to zinc ion	6.61E-03
46	GO:0009867: jasmonic acid mediated signaling pathway	7.05E-03
47	GO:0006897: endocytosis	7.95E-03
48	GO:0009744: response to sucrose	8.41E-03
49	GO:0009640: photomorphogenesis	8.41E-03
50	GO:0009735: response to cytokinin	8.81E-03
51	GO:0009736: cytokinin-activated signaling pathway	1.04E-02
52	GO:0009809: lignin biosynthetic process	1.04E-02
53	GO:0009585: red, far-red light phototransduction	1.04E-02
54	GO:0018105: peptidyl-serine phosphorylation	1.36E-02
55	GO:0009651: response to salt stress	1.59E-02
56	GO:0042744: hydrogen peroxide catabolic process	1.71E-02
57	GO:0040008: regulation of growth	1.89E-02
58	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.12E-02
59	GO:0007166: cell surface receptor signaling pathway	2.15E-02
60	GO:0009617: response to bacterium	2.22E-02
61	GO:0015031: protein transport	2.49E-02
62	GO:0005975: carbohydrate metabolic process	2.97E-02
63	GO:0048366: leaf development	3.00E-02
64	GO:0045892: negative regulation of transcription, DNA-templated	3.58E-02
65	GO:0006886: intracellular protein transport	3.62E-02
66	GO:0009408: response to heat	4.11E-02
67	GO:0009793: embryo development ending in seed dormancy	4.52E-02
68	GO:0009873: ethylene-activated signaling pathway	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0008777: acetylornithine deacetylase activity	0.00E+00
2	GO:0004298: threonine-type endopeptidase activity	1.26E-06
3	GO:0008233: peptidase activity	3.13E-05
4	GO:0019786: Atg8-specific protease activity	3.50E-05
5	GO:0004617: phosphoglycerate dehydrogenase activity	8.78E-05
6	GO:0019779: Atg8 activating enzyme activity	8.78E-05
7	GO:0052692: raffinose alpha-galactosidase activity	1.52E-04
8	GO:0005483: soluble NSF attachment protein activity	1.52E-04
9	GO:0003863: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity	1.52E-04
10	GO:0004848: ureidoglycolate hydrolase activity	1.52E-04
11	GO:0004557: alpha-galactosidase activity	1.52E-04
12	GO:0019776: Atg8 ligase activity	3.05E-04
13	GO:0019905: syntaxin binding	3.05E-04
14	GO:0016985: mannan endo-1,4-beta-mannosidase activity	3.05E-04
15	GO:0036402: proteasome-activating ATPase activity	4.78E-04
16	GO:0015288: porin activity	7.68E-04
17	GO:0008308: voltage-gated anion channel activity	8.71E-04
18	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	1.20E-03
19	GO:0017025: TBP-class protein binding	1.84E-03
20	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	2.41E-03
21	GO:0004843: thiol-dependent ubiquitin-specific protease activity	3.88E-03
22	GO:0008237: metallopeptidase activity	4.60E-03
23	GO:0016597: amino acid binding	4.80E-03
24	GO:0016798: hydrolase activity, acting on glycosyl bonds	5.58E-03
25	GO:0102483: scopolin beta-glucosidase activity	5.58E-03
26	GO:0005096: GTPase activator activity	6.19E-03
27	GO:0008422: beta-glucosidase activity	7.49E-03
28	GO:0051287: NAD binding	9.61E-03
29	GO:0000166: nucleotide binding	9.64E-03
30	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.27E-02
31	GO:0008026: ATP-dependent helicase activity	1.38E-02
32	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.86E-02
33	GO:0004601: peroxidase activity	2.67E-02
34	GO:0042803: protein homodimerization activity	3.66E-02

Rank	GO Term	Adjusted P value
1	GO:0000502: proteasome complex	1.99E-08
2	GO:0005839: proteasome core complex	1.26E-06
3	GO:0005829: cytosol	5.78E-05
4	GO:0005775: vacuolar lumen	2.25E-04
5	GO:0005776: autophagosome	3.05E-04
6	GO:0031597: cytosolic proteasome complex	5.70E-04
7	GO:0031595: nuclear proteasome complex	6.66E-04
8	GO:0000421: autophagosome membrane	7.68E-04
9	GO:0046930: pore complex	8.71E-04
10	GO:0019773: proteasome core complex, alpha-subunit complex	8.71E-04
11	GO:0008180: COP9 signalosome	9.78E-04
12	GO:0008540: proteasome regulatory particle, base subcomplex	1.09E-03
13	GO:0008541: proteasome regulatory particle, lid subcomplex	1.32E-03
14	GO:0005741: mitochondrial outer membrane	2.41E-03
15	GO:0031410: cytoplasmic vesicle	2.56E-03
16	GO:0005774: vacuolar membrane	3.73E-03
17	GO:0048046: apoplast	4.02E-03
18	GO:0005643: nuclear pore	5.99E-03
19	GO:0005773: vacuole	7.13E-03
20	GO:0031201: SNARE complex	7.95E-03
21	GO:0005635: nuclear envelope	1.09E-02
22	GO:0005834: heterotrimeric G-protein complex	1.22E-02
23	GO:0005759: mitochondrial matrix	1.83E-02
24	GO:0005618: cell wall	1.96E-02
25	GO:0005634: nucleus	2.72E-02
26	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	2.85E-02
27	GO:0005874: microtubule	3.04E-02