gene detail

Gene description

TAIR ID: AT5G54940

Short description: Translation initiation factor SUI1 family protein

Pathogen responsiveness: -1.06

General responsiveness: -0.87

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

translational initiation

GO cellular component

unkown

GO molecular function

translation initiation factor activity

Protein domain

Pfam	PF01253, Translation initiation factor SUI1

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath03013: RNA transport

Transcriptional regulation

Regulator:
AT5G47230, AT5G13790, AT3G15210, AT5G47220, AT1G50640, AT4G36990, AT4G17500

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 1

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view
GSE26679_EDR1_GC  view

Differentially expressed condition

9 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Penta, control	Penta, PstDC3000 12 h	-1.56	9.18E-11
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	1.68	1.13E-07
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 4 h	1.63	3.29E-07
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	2.17	3.63E-09
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	1.91	3.89E-15
GSE56094	Col, WT, control 11 h	Col, WT, PstDC3000 11 h	1.98	2.58E-15
GSE56094	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	1.67	3.73E-12
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	1.54	4.51E-11
GSE56094	Col, WT, control 8 h	Col, WT, PstDC3000 8 h	1.59	3.84E-11