gene detail

Gene description

TAIR ID: AT5G47110

Short description: Chlorophyll A-B binding family protein

Pathogen responsiveness: -0.55

General responsiveness: 1.68

Orthologous

Rice:

OS02G0125700

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

positive regulation of chlorophyll biosynthetic process, photosynthesis, light harvesting, transmembrane transport, positive regulation of vitamin E biosynthetic process, positive regulation of phytol biosynthetic process, protein-chromophore linkage

GO cellular component

chloroplast thylakoid membrane, integral component of membrane, thylakoid membrane, chloroplast, photosystem II

GO molecular function

protein binding, substrate-specific transmembrane transporter activity, identical protein binding

Protein domain

Pfam	PF00504, Chlorophyll A-B binding protein

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G53660, AT3G14230, AT1G24260

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

13 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-2.60	2.50E-10
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-1.94	2.14E-12
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-2.48	7.92E-14
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-1.89	4.45E-12
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-2.65	2.76E-14
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	-1.61	3.43E-13
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-1.83	3.44E-05
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	-2.00	1.18E-11
GSE56094	Col, WT, control 11 h	Col, WT, PstDC3000 11 h	-1.57	5.83E-08
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	-1.65	1.13E-08
GSE56094	Col, WT, control 9 h	Col, WT, PstDC3000 9 h	-1.50	3.03E-07
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	-2.01	1.77E-03
GSE9674	Ws-4, AtMYB30 ox, control	Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h	-1.67	4.10E-03