Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G47110

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
2GO:0005996: monosaccharide metabolic process0.00E+00
3GO:0015882: L-ascorbic acid transport0.00E+00
4GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
5GO:0006114: glycerol biosynthetic process0.00E+00
6GO:0008298: intracellular mRNA localization0.00E+00
7GO:0006399: tRNA metabolic process0.00E+00
8GO:0070125: mitochondrial translational elongation0.00E+00
9GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
10GO:0015979: photosynthesis5.97E-16
11GO:0010027: thylakoid membrane organization5.91E-11
12GO:0018298: protein-chromophore linkage7.37E-09
13GO:0090391: granum assembly3.14E-08
14GO:0010196: nonphotochemical quenching4.87E-08
15GO:0009768: photosynthesis, light harvesting in photosystem I5.18E-06
16GO:0009772: photosynthetic electron transport in photosystem II5.40E-06
17GO:0009658: chloroplast organization1.35E-05
18GO:0010206: photosystem II repair1.63E-05
19GO:0018119: peptidyl-cysteine S-nitrosylation3.66E-05
20GO:0010207: photosystem II assembly6.83E-05
21GO:0010236: plastoquinone biosynthetic process9.49E-05
22GO:0009637: response to blue light1.51E-04
23GO:0010189: vitamin E biosynthetic process1.88E-04
24GO:0043953: protein transport by the Tat complex3.04E-04
25GO:1904966: positive regulation of vitamin E biosynthetic process3.04E-04
26GO:0071277: cellular response to calcium ion3.04E-04
27GO:0000481: maturation of 5S rRNA3.04E-04
28GO:1904964: positive regulation of phytol biosynthetic process3.04E-04
29GO:0042371: vitamin K biosynthetic process3.04E-04
30GO:0065002: intracellular protein transmembrane transport3.04E-04
31GO:0043686: co-translational protein modification3.04E-04
32GO:0043007: maintenance of rDNA3.04E-04
33GO:1902458: positive regulation of stomatal opening3.04E-04
34GO:0010028: xanthophyll cycle3.04E-04
35GO:0034337: RNA folding3.04E-04
36GO:0010729: positive regulation of hydrogen peroxide biosynthetic process3.04E-04
37GO:0006419: alanyl-tRNA aminoacylation3.04E-04
38GO:0010362: negative regulation of anion channel activity by blue light3.04E-04
39GO:0009642: response to light intensity3.09E-04
40GO:0048564: photosystem I assembly3.09E-04
41GO:0032544: plastid translation3.80E-04
42GO:1902326: positive regulation of chlorophyll biosynthetic process6.66E-04
43GO:0030187: melatonin biosynthetic process6.66E-04
44GO:0006432: phenylalanyl-tRNA aminoacylation6.66E-04
45GO:0018026: peptidyl-lysine monomethylation6.66E-04
46GO:0006435: threonyl-tRNA aminoacylation6.66E-04
47GO:0010155: regulation of proton transport6.66E-04
48GO:0006729: tetrahydrobiopterin biosynthetic process6.66E-04
49GO:1903426: regulation of reactive oxygen species biosynthetic process6.66E-04
50GO:0009773: photosynthetic electron transport in photosystem I7.28E-04
51GO:0019684: photosynthesis, light reaction7.28E-04
52GO:0016311: dephosphorylation8.42E-04
53GO:0006006: glucose metabolic process9.40E-04
54GO:0010020: chloroplast fission1.06E-03
55GO:0019253: reductive pentose-phosphate cycle1.06E-03
56GO:0009405: pathogenesis1.08E-03
57GO:0071492: cellular response to UV-A1.08E-03
58GO:0005977: glycogen metabolic process1.08E-03
59GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity1.55E-03
60GO:0046739: transport of virus in multicellular host1.55E-03
61GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.55E-03
62GO:2001141: regulation of RNA biosynthetic process1.55E-03
63GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.55E-03
64GO:0006020: inositol metabolic process1.55E-03
65GO:0071484: cellular response to light intensity1.55E-03
66GO:0009052: pentose-phosphate shunt, non-oxidative branch1.55E-03
67GO:0010114: response to red light1.66E-03
68GO:0061077: chaperone-mediated protein folding1.76E-03
69GO:0006546: glycine catabolic process2.07E-03
70GO:0006021: inositol biosynthetic process2.07E-03
71GO:0010021: amylopectin biosynthetic process2.07E-03
72GO:0015976: carbon utilization2.07E-03
73GO:0071486: cellular response to high light intensity2.07E-03
74GO:0006109: regulation of carbohydrate metabolic process2.07E-03
75GO:0045727: positive regulation of translation2.07E-03
76GO:0015994: chlorophyll metabolic process2.07E-03
77GO:0016558: protein import into peroxisome matrix2.65E-03
78GO:0006564: L-serine biosynthetic process2.65E-03
79GO:0009904: chloroplast accumulation movement2.65E-03
80GO:0045038: protein import into chloroplast thylakoid membrane2.65E-03
81GO:0031365: N-terminal protein amino acid modification2.65E-03
82GO:0006096: glycolytic process2.99E-03
83GO:0015986: ATP synthesis coupled proton transport3.09E-03
84GO:0042793: transcription from plastid promoter3.27E-03
85GO:0046855: inositol phosphate dephosphorylation3.27E-03
86GO:0042549: photosystem II stabilization3.27E-03
87GO:0009793: embryo development ending in seed dormancy3.76E-03
88GO:0042372: phylloquinone biosynthetic process3.93E-03
89GO:0009903: chloroplast avoidance movement3.93E-03
90GO:0009645: response to low light intensity stimulus4.64E-03
91GO:0006400: tRNA modification4.64E-03
92GO:0071446: cellular response to salicylic acid stimulus4.64E-03
93GO:0006605: protein targeting5.39E-03
94GO:0009704: de-etiolation5.39E-03
95GO:0032508: DNA duplex unwinding5.39E-03
96GO:2000070: regulation of response to water deprivation5.39E-03
97GO:0009231: riboflavin biosynthetic process5.39E-03
98GO:0016559: peroxisome fission5.39E-03
99GO:0015995: chlorophyll biosynthetic process6.04E-03
100GO:0007186: G-protein coupled receptor signaling pathway6.18E-03
101GO:0009657: plastid organization6.18E-03
102GO:0017004: cytochrome complex assembly6.18E-03
103GO:2000031: regulation of salicylic acid mediated signaling pathway6.18E-03
104GO:0071482: cellular response to light stimulus6.18E-03
105GO:0015996: chlorophyll catabolic process6.18E-03
106GO:0090333: regulation of stomatal closure7.01E-03
107GO:0006754: ATP biosynthetic process7.01E-03
108GO:0098656: anion transmembrane transport7.01E-03
109GO:0010218: response to far red light7.38E-03
110GO:0007623: circadian rhythm7.61E-03
111GO:0010205: photoinhibition7.87E-03
112GO:0009638: phototropism7.87E-03
113GO:0006949: syncytium formation8.77E-03
114GO:0009089: lysine biosynthetic process via diaminopimelate9.71E-03
115GO:0009073: aromatic amino acid family biosynthetic process9.71E-03
116GO:0043085: positive regulation of catalytic activity9.71E-03
117GO:0006352: DNA-templated transcription, initiation9.71E-03
118GO:0006415: translational termination9.71E-03
119GO:0000272: polysaccharide catabolic process9.71E-03
120GO:0045037: protein import into chloroplast stroma1.07E-02
121GO:0006790: sulfur compound metabolic process1.07E-02
122GO:0009785: blue light signaling pathway1.17E-02
123GO:0009767: photosynthetic electron transport chain1.17E-02
124GO:0009644: response to high light intensity1.19E-02
125GO:0046854: phosphatidylinositol phosphorylation1.38E-02
126GO:0006863: purine nucleobase transport1.49E-02
127GO:0006289: nucleotide-excision repair1.60E-02
128GO:0042742: defense response to bacterium1.68E-02
129GO:0019953: sexual reproduction1.72E-02
130GO:0048278: vesicle docking1.84E-02
131GO:0048511: rhythmic process1.84E-02
132GO:0019915: lipid storage1.84E-02
133GO:0071369: cellular response to ethylene stimulus2.09E-02
134GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.09E-02
135GO:0045454: cell redox homeostasis2.19E-02
136GO:0006284: base-excision repair2.22E-02
137GO:0009561: megagametogenesis2.22E-02
138GO:0009306: protein secretion2.22E-02
139GO:0006412: translation2.44E-02
140GO:0042631: cellular response to water deprivation2.48E-02
141GO:0006520: cellular amino acid metabolic process2.62E-02
142GO:0006662: glycerol ether metabolic process2.62E-02
143GO:0010182: sugar mediated signaling pathway2.62E-02
144GO:0048868: pollen tube development2.62E-02
145GO:0032259: methylation2.70E-02
146GO:0061025: membrane fusion2.76E-02
147GO:0042752: regulation of circadian rhythm2.76E-02
148GO:0009409: response to cold2.80E-02
149GO:0006281: DNA repair2.85E-02
150GO:0009791: post-embryonic development2.90E-02
151GO:0019252: starch biosynthetic process2.90E-02
152GO:0008654: phospholipid biosynthetic process2.90E-02
153GO:0071554: cell wall organization or biogenesis3.04E-02
154GO:0002229: defense response to oomycetes3.04E-02
155GO:0010193: response to ozone3.04E-02
156GO:0006635: fatty acid beta-oxidation3.04E-02
157GO:0016032: viral process3.19E-02
158GO:0010583: response to cyclopentenone3.19E-02
159GO:0006413: translational initiation3.40E-02
160GO:0009828: plant-type cell wall loosening3.49E-02
161GO:0009567: double fertilization forming a zygote and endosperm3.49E-02
162GO:0009451: RNA modification3.73E-02
163GO:0006906: vesicle fusion4.27E-02
164GO:0009817: defense response to fungus, incompatible interaction4.77E-02
165GO:0000160: phosphorelay signal transduction system4.94E-02
166GO:0009813: flavonoid biosynthetic process4.94E-02
RankGO TermAdjusted P value
1GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
2GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
3GO:0010276: phytol kinase activity0.00E+00
4GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
5GO:0004760: serine-pyruvate transaminase activity0.00E+00
6GO:0015229: L-ascorbic acid transporter activity0.00E+00
7GO:0042623: ATPase activity, coupled0.00E+00
8GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
9GO:0050281: serine-glyoxylate transaminase activity0.00E+00
10GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity0.00E+00
11GO:0004059: aralkylamine N-acetyltransferase activity0.00E+00
12GO:0043136: glycerol-3-phosphatase activity0.00E+00
13GO:0000121: glycerol-1-phosphatase activity0.00E+00
14GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
15GO:0016168: chlorophyll binding1.21E-07
16GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.84E-06
17GO:0031409: pigment binding3.27E-06
18GO:0005528: FK506 binding4.14E-06
19GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity4.22E-06
20GO:0003959: NADPH dehydrogenase activity9.49E-05
21GO:0019843: rRNA binding1.48E-04
22GO:0004813: alanine-tRNA ligase activity3.04E-04
23GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity3.04E-04
24GO:0042586: peptide deformylase activity3.04E-04
25GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity3.04E-04
26GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.04E-04
27GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity3.04E-04
28GO:0016630: protochlorophyllide reductase activity6.66E-04
29GO:0008934: inositol monophosphate 1-phosphatase activity6.66E-04
30GO:0004829: threonine-tRNA ligase activity6.66E-04
31GO:0019172: glyoxalase III activity6.66E-04
32GO:0019156: isoamylase activity6.66E-04
33GO:0052833: inositol monophosphate 4-phosphatase activity6.66E-04
34GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase6.66E-04
35GO:0030385: ferredoxin:thioredoxin reductase activity6.66E-04
36GO:0004826: phenylalanine-tRNA ligase activity6.66E-04
37GO:0047746: chlorophyllase activity6.66E-04
38GO:0010297: heteropolysaccharide binding6.66E-04
39GO:0009977: proton motive force dependent protein transmembrane transporter activity6.66E-04
40GO:0004617: phosphoglycerate dehydrogenase activity6.66E-04
41GO:0004047: aminomethyltransferase activity6.66E-04
42GO:0052832: inositol monophosphate 3-phosphatase activity6.66E-04
43GO:0000049: tRNA binding8.31E-04
44GO:0031072: heat shock protein binding9.40E-04
45GO:0008266: poly(U) RNA binding1.06E-03
46GO:0005504: fatty acid binding1.08E-03
47GO:0003913: DNA photolyase activity1.08E-03
48GO:0004751: ribose-5-phosphate isomerase activity1.08E-03
49GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.08E-03
50GO:0004324: ferredoxin-NADP+ reductase activity1.08E-03
51GO:0016149: translation release factor activity, codon specific1.55E-03
52GO:0009882: blue light photoreceptor activity1.55E-03
53GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.55E-03
54GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.55E-03
55GO:0005198: structural molecule activity1.92E-03
56GO:0070628: proteasome binding2.07E-03
57GO:0045430: chalcone isomerase activity2.07E-03
58GO:0043495: protein anchor2.07E-03
59GO:0004659: prenyltransferase activity2.07E-03
60GO:0016279: protein-lysine N-methyltransferase activity2.07E-03
61GO:0001053: plastid sigma factor activity2.07E-03
62GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.07E-03
63GO:0008453: alanine-glyoxylate transaminase activity2.07E-03
64GO:0004045: aminoacyl-tRNA hydrolase activity2.07E-03
65GO:0080032: methyl jasmonate esterase activity2.07E-03
66GO:0016987: sigma factor activity2.07E-03
67GO:0022891: substrate-specific transmembrane transporter activity2.10E-03
68GO:0051287: NAD binding2.11E-03
69GO:0042802: identical protein binding2.17E-03
70GO:0008725: DNA-3-methyladenine glycosylase activity2.65E-03
71GO:0046933: proton-transporting ATP synthase activity, rotational mechanism2.88E-03
72GO:0004556: alpha-amylase activity3.27E-03
73GO:0004462: lactoylglutathione lyase activity3.27E-03
74GO:0000293: ferric-chelate reductase activity3.27E-03
75GO:0004605: phosphatidate cytidylyltransferase activity3.27E-03
76GO:0080030: methyl indole-3-acetate esterase activity3.27E-03
77GO:0031593: polyubiquitin binding3.27E-03
78GO:0051082: unfolded protein binding3.79E-03
79GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity3.93E-03
80GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.93E-03
81GO:0009881: photoreceptor activity4.64E-03
82GO:0019899: enzyme binding4.64E-03
83GO:0016597: amino acid binding4.84E-03
84GO:0008135: translation factor activity, RNA binding6.18E-03
85GO:0003747: translation release factor activity7.01E-03
86GO:0003924: GTPase activity7.34E-03
87GO:0003746: translation elongation factor activity8.49E-03
88GO:0030234: enzyme regulator activity8.77E-03
89GO:0008047: enzyme activator activity8.77E-03
90GO:0003993: acid phosphatase activity8.87E-03
91GO:0050661: NADP binding9.68E-03
92GO:0005315: inorganic phosphate transmembrane transporter activity1.17E-02
93GO:0004089: carbonate dehydratase activity1.17E-02
94GO:0000155: phosphorelay sensor kinase activity1.17E-02
95GO:0004857: enzyme inhibitor activity1.60E-02
96GO:0043130: ubiquitin binding1.60E-02
97GO:0005345: purine nucleobase transmembrane transporter activity1.72E-02
98GO:0030570: pectate lyase activity2.09E-02
99GO:0008514: organic anion transmembrane transporter activity2.22E-02
100GO:0003756: protein disulfide isomerase activity2.22E-02
101GO:0047134: protein-disulfide reductase activity2.35E-02
102GO:0008080: N-acetyltransferase activity2.62E-02
103GO:0016491: oxidoreductase activity2.68E-02
104GO:0050662: coenzyme binding2.76E-02
105GO:0010181: FMN binding2.76E-02
106GO:0004791: thioredoxin-disulfide reductase activity2.76E-02
107GO:0048038: quinone binding3.04E-02
108GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.33E-02
109GO:0003684: damaged DNA binding3.49E-02
110GO:0008483: transaminase activity3.64E-02
111GO:0005525: GTP binding3.64E-02
112GO:0016413: O-acetyltransferase activity3.79E-02
113GO:0008017: microtubule binding3.82E-02
114GO:0003743: translation initiation factor activity4.26E-02
115GO:0005509: calcium ion binding4.37E-02
116GO:0004721: phosphoprotein phosphatase activity4.44E-02
117GO:0008757: S-adenosylmethionine-dependent methyltransferase activity4.60E-02
118GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.77E-02
RankGO TermAdjusted P value
1GO:0010368: chloroplast isoamylase complex0.00E+00
2GO:0009515: granal stacked thylakoid0.00E+00
3GO:0009349: riboflavin synthase complex0.00E+00
4GO:0043235: receptor complex0.00E+00
5GO:0009507: chloroplast2.18E-83
6GO:0009535: chloroplast thylakoid membrane8.37E-61
7GO:0009534: chloroplast thylakoid4.02E-42
8GO:0009570: chloroplast stroma8.24E-32
9GO:0009941: chloroplast envelope1.19E-28
10GO:0009579: thylakoid1.64E-25
11GO:0009543: chloroplast thylakoid lumen1.56E-21
12GO:0031977: thylakoid lumen1.69E-14
13GO:0030095: chloroplast photosystem II2.99E-14
14GO:0010287: plastoglobule8.90E-11
15GO:0009523: photosystem II2.34E-08
16GO:0000427: plastid-encoded plastid RNA polymerase complex4.22E-06
17GO:0009654: photosystem II oxygen evolving complex5.18E-06
18GO:0009538: photosystem I reaction center8.17E-06
19GO:0019898: extrinsic component of membrane2.52E-05
20GO:0010319: stromule4.78E-05
21GO:0042651: thylakoid membrane1.31E-04
22GO:0016020: membrane1.31E-04
23GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)1.37E-04
24GO:0031969: chloroplast membrane1.83E-04
25GO:0009782: photosystem I antenna complex3.04E-04
26GO:0009783: photosystem II antenna complex3.04E-04
27GO:0031361: integral component of thylakoid membrane3.04E-04
28GO:0009522: photosystem I3.33E-04
29GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)4.57E-04
30GO:0033281: TAT protein transport complex1.08E-03
31GO:0009528: plastid inner membrane1.08E-03
32GO:0030076: light-harvesting complex1.18E-03
33GO:0016021: integral component of membrane1.24E-03
34GO:0042646: plastid nucleoid1.55E-03
35GO:0048046: apoplast1.61E-03
36GO:0009532: plastid stroma1.76E-03
37GO:0005840: ribosome1.85E-03
38GO:0009544: chloroplast ATP synthase complex2.07E-03
39GO:0009527: plastid outer membrane2.07E-03
40GO:0009898: cytoplasmic side of plasma membrane2.07E-03
41GO:0016363: nuclear matrix3.93E-03
42GO:0016272: prefoldin complex3.93E-03
43GO:0009986: cell surface4.64E-03
44GO:0009533: chloroplast stromal thylakoid4.64E-03
45GO:0009707: chloroplast outer membrane6.69E-03
46GO:0055028: cortical microtubule8.77E-03
47GO:0012511: monolayer-surrounded lipid storage body9.71E-03
48GO:0032040: small-subunit processome1.07E-02
49GO:0009508: plastid chromosome1.17E-02
50GO:0015935: small ribosomal subunit1.84E-02
51GO:0009706: chloroplast inner membrane2.11E-02
52GO:0009504: cell plate2.90E-02
53GO:0005759: mitochondrial matrix3.32E-02
54GO:0009295: nucleoid3.64E-02
55GO:0005778: peroxisomal membrane3.64E-02
56GO:0030529: intracellular ribonucleoprotein complex3.95E-02
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Gene type



Gene DE type