Gene: AT5G42310
     

Gene description


TAIR ID: AT5G42310

Short description: Pentatricopeptide repeat (PPR-like) superfamily protein

Pathogen responsiveness: -0.05

General responsiveness: 1.52

Orthologous


Rice: No orthologous gene
Maize:

GRMZM2G083950  

Wheat: No orthologous gene

GO biological process


single-stranded RNA binding, RNA modification, chloroplast mRNA processing, chloroplast organization


GO cellular component


chloroplast nucleoid, chloroplast stroma, chloroplast, mitochondrion, thylakoid membrane


GO molecular function


endonuclease activity, RNA binding


Protein domain


PfamPF01535, PPR repeat
PfamPF13041, PPR repeat family
PfamPF13812, Pentatricopeptide repeat domain

Metabolic pathway


Not involved in metabolic pathway


KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT5G13790, AT3G14230

Target:
none

Protein-protein interaction network


No Interactor


Differentially expressed condition


21 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE17464Laer, JA+Flg22 0 hLaer, JA+Flg22 1 h-2.022.23E-03
GSE17464Laer, JA+Flg22 0 hLaer, JA+Flg22 2 h-2.719.46E-05
GSE17464Laer, controlLaer, Flg22 1 h-1.501.13E-02
GSE17464Laer, controlLaer, Flg22 2 h-2.084.30E-04
GSE17464Penta, controlPenta, Flg22 2 h-2.142.84E-04
GSE17464Penta, controlPenta, Flg22 2 h-2.464.52E-05
GSE18978Col, WT, control 24 hCol, WT, PsmES4326 24 h-2.593.24E-10
GSE21920Col, WT, mockCol, WT, Pto HopZ1a 6 h-1.581.12E-07
GSE37269St0, WT, controlSt0, WT, TEV 21 d-1.671.04E-02
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 12 h-2.042.64E-12
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 8 h-1.772.99E-11
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h-1.561.68E-10
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 8 h-2.131.38E-12
GSE45214Col, med16, PstDC3000 AvrRpt2 0 hCol, med16, PstDC3000 AvrRpt2 4 h-1.682.13E-11
GSE5520Col, WT, control 7 hCol, WT, PstDC3000 7 h-2.777.10E-08
GSE56094Col, WT, control 10 hCol, WT, PstDC3000 10 h-1.731.08E-14
GSE56094Col, WT, control 13 hCol, WT, PstDC3000 13 h-1.542.35E-12
GSE58954Col, WT, Psm AvrRpt2 0 hCol, WT, Psm AvrRpt2 6 h-1.782.08E-03
GSE6176Col, WT, control 12 hCol, WT, PstDC3000 12 h-1.784.78E-08
GSE9674Ws-4, AtMYB30 ox, controlWs-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h-1.927.44E-04
GSE9674Ws-4, WT, controlWs-4, WT, Xanthomonas strain Xcc147 6 h-1.851.13E-03






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