GO Enrichment Analysis of Co-expressed Genes with
AT5G42310
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005996: monosaccharide metabolic process | 0.00E+00 |
| 2 | GO:0007638: mechanosensory behavior | 0.00E+00 |
| 3 | GO:0019265: glycine biosynthetic process, by transamination of glyoxylate | 0.00E+00 |
| 4 | GO:0080114: positive regulation of glycine hydroxymethyltransferase activity | 0.00E+00 |
| 5 | GO:0009902: chloroplast relocation | 2.64E-06 |
| 6 | GO:0019676: ammonia assimilation cycle | 2.64E-06 |
| 7 | GO:0010362: negative regulation of anion channel activity by blue light | 4.88E-05 |
| 8 | GO:0006659: phosphatidylserine biosynthetic process | 4.88E-05 |
| 9 | GO:0015801: aromatic amino acid transport | 4.88E-05 |
| 10 | GO:1902458: positive regulation of stomatal opening | 4.88E-05 |
| 11 | GO:0009773: photosynthetic electron transport in photosystem I | 5.27E-05 |
| 12 | GO:0097054: L-glutamate biosynthetic process | 1.20E-04 |
| 13 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 1.20E-04 |
| 14 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 1.20E-04 |
| 15 | GO:0090506: axillary shoot meristem initiation | 2.06E-04 |
| 16 | GO:0000913: preprophase band assembly | 2.06E-04 |
| 17 | GO:0031022: nuclear migration along microfilament | 2.06E-04 |
| 18 | GO:0006000: fructose metabolic process | 2.06E-04 |
| 19 | GO:0006696: ergosterol biosynthetic process | 2.06E-04 |
| 20 | GO:0016117: carotenoid biosynthetic process | 2.14E-04 |
| 21 | GO:0009791: post-embryonic development | 2.90E-04 |
| 22 | GO:0006241: CTP biosynthetic process | 3.01E-04 |
| 23 | GO:0006165: nucleoside diphosphate phosphorylation | 3.01E-04 |
| 24 | GO:0006228: UTP biosynthetic process | 3.01E-04 |
| 25 | GO:0006537: glutamate biosynthetic process | 3.01E-04 |
| 26 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 3.01E-04 |
| 27 | GO:0007231: osmosensory signaling pathway | 3.01E-04 |
| 28 | GO:0007623: circadian rhythm | 3.19E-04 |
| 29 | GO:0010090: trichome morphogenesis | 3.54E-04 |
| 30 | GO:0006810: transport | 3.84E-04 |
| 31 | GO:0009765: photosynthesis, light harvesting | 4.04E-04 |
| 32 | GO:0006183: GTP biosynthetic process | 4.04E-04 |
| 33 | GO:0045727: positive regulation of translation | 4.04E-04 |
| 34 | GO:0033500: carbohydrate homeostasis | 4.04E-04 |
| 35 | GO:0006021: inositol biosynthetic process | 4.04E-04 |
| 36 | GO:0006542: glutamine biosynthetic process | 4.04E-04 |
| 37 | GO:0016120: carotene biosynthetic process | 5.13E-04 |
| 38 | GO:0006656: phosphatidylcholine biosynthetic process | 5.13E-04 |
| 39 | GO:0046785: microtubule polymerization | 5.13E-04 |
| 40 | GO:0009904: chloroplast accumulation movement | 5.13E-04 |
| 41 | GO:0045038: protein import into chloroplast thylakoid membrane | 5.13E-04 |
| 42 | GO:0016123: xanthophyll biosynthetic process | 5.13E-04 |
| 43 | GO:0009658: chloroplast organization | 5.57E-04 |
| 44 | GO:0010264: myo-inositol hexakisphosphate biosynthetic process | 6.29E-04 |
| 45 | GO:0009853: photorespiration | 7.29E-04 |
| 46 | GO:0010067: procambium histogenesis | 7.50E-04 |
| 47 | GO:0009903: chloroplast avoidance movement | 7.50E-04 |
| 48 | GO:0046777: protein autophosphorylation | 7.92E-04 |
| 49 | GO:0007155: cell adhesion | 1.01E-03 |
| 50 | GO:0070413: trehalose metabolism in response to stress | 1.01E-03 |
| 51 | GO:2000070: regulation of response to water deprivation | 1.01E-03 |
| 52 | GO:0006002: fructose 6-phosphate metabolic process | 1.14E-03 |
| 53 | GO:0015996: chlorophyll catabolic process | 1.14E-03 |
| 54 | GO:0007186: G-protein coupled receptor signaling pathway | 1.14E-03 |
| 55 | GO:0009657: plastid organization | 1.14E-03 |
| 56 | GO:0032544: plastid translation | 1.14E-03 |
| 57 | GO:0017004: cytochrome complex assembly | 1.14E-03 |
| 58 | GO:0009638: phototropism | 1.43E-03 |
| 59 | GO:0006816: calcium ion transport | 1.75E-03 |
| 60 | GO:0006415: translational termination | 1.75E-03 |
| 61 | GO:0000272: polysaccharide catabolic process | 1.75E-03 |
| 62 | GO:0018119: peptidyl-cysteine S-nitrosylation | 1.75E-03 |
| 63 | GO:0045037: protein import into chloroplast stroma | 1.91E-03 |
| 64 | GO:0005986: sucrose biosynthetic process | 2.08E-03 |
| 65 | GO:0006094: gluconeogenesis | 2.08E-03 |
| 66 | GO:0009767: photosynthetic electron transport chain | 2.08E-03 |
| 67 | GO:0009735: response to cytokinin | 2.15E-03 |
| 68 | GO:0019253: reductive pentose-phosphate cycle | 2.26E-03 |
| 69 | GO:0010207: photosystem II assembly | 2.26E-03 |
| 70 | GO:0010223: secondary shoot formation | 2.26E-03 |
| 71 | GO:0005985: sucrose metabolic process | 2.44E-03 |
| 72 | GO:0070588: calcium ion transmembrane transport | 2.44E-03 |
| 73 | GO:0006636: unsaturated fatty acid biosynthetic process | 2.62E-03 |
| 74 | GO:0005992: trehalose biosynthetic process | 2.81E-03 |
| 75 | GO:0061077: chaperone-mediated protein folding | 3.20E-03 |
| 76 | GO:0003333: amino acid transmembrane transport | 3.20E-03 |
| 77 | GO:0080092: regulation of pollen tube growth | 3.41E-03 |
| 78 | GO:0009294: DNA mediated transformation | 3.61E-03 |
| 79 | GO:0001944: vasculature development | 3.61E-03 |
| 80 | GO:0010089: xylem development | 3.82E-03 |
| 81 | GO:0042631: cellular response to water deprivation | 4.26E-03 |
| 82 | GO:0010087: phloem or xylem histogenesis | 4.26E-03 |
| 83 | GO:0010118: stomatal movement | 4.26E-03 |
| 84 | GO:0010182: sugar mediated signaling pathway | 4.48E-03 |
| 85 | GO:0007018: microtubule-based movement | 4.71E-03 |
| 86 | GO:0008654: phospholipid biosynthetic process | 4.94E-03 |
| 87 | GO:0016032: viral process | 5.42E-03 |
| 88 | GO:0000910: cytokinesis | 6.42E-03 |
| 89 | GO:0015979: photosynthesis | 6.43E-03 |
| 90 | GO:0016126: sterol biosynthetic process | 6.67E-03 |
| 91 | GO:0010027: thylakoid membrane organization | 6.67E-03 |
| 92 | GO:0009817: defense response to fungus, incompatible interaction | 8.03E-03 |
| 93 | GO:0018298: protein-chromophore linkage | 8.03E-03 |
| 94 | GO:0000160: phosphorelay signal transduction system | 8.31E-03 |
| 95 | GO:0009409: response to cold | 8.64E-03 |
| 96 | GO:0007568: aging | 8.88E-03 |
| 97 | GO:0006865: amino acid transport | 9.17E-03 |
| 98 | GO:0009637: response to blue light | 9.47E-03 |
| 99 | GO:0055114: oxidation-reduction process | 1.06E-02 |
| 100 | GO:0009744: response to sucrose | 1.13E-02 |
| 101 | GO:0006364: rRNA processing | 1.40E-02 |
| 102 | GO:0009416: response to light stimulus | 1.48E-02 |
| 103 | GO:0035556: intracellular signal transduction | 1.56E-02 |
| 104 | GO:0018105: peptidyl-serine phosphorylation | 1.83E-02 |
| 105 | GO:0006396: RNA processing | 1.83E-02 |
| 106 | GO:0009845: seed germination | 2.23E-02 |
| 107 | GO:0006633: fatty acid biosynthetic process | 2.47E-02 |
| 108 | GO:0010468: regulation of gene expression | 3.00E-02 |
| 109 | GO:0009617: response to bacterium | 3.00E-02 |
| 110 | GO:0071555: cell wall organization | 3.00E-02 |
| 111 | GO:0009860: pollen tube growth | 3.81E-02 |
| 112 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 4.31E-02 |
| 113 | GO:0046686: response to cadmium ion | 4.65E-02 |
| 114 | GO:0045454: cell redox homeostasis | 4.78E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0045435: lycopene epsilon cyclase activity | 0.00E+00 |
| 2 | GO:0004760: serine-pyruvate transaminase activity | 0.00E+00 |
| 3 | GO:0046905: phytoene synthase activity | 0.00E+00 |
| 4 | GO:0052667: phosphomethylethanolamine N-methyltransferase activity | 0.00E+00 |
| 5 | GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity | 0.00E+00 |
| 6 | GO:0050281: serine-glyoxylate transaminase activity | 0.00E+00 |
| 7 | GO:0047259: glucomannan 4-beta-mannosyltransferase activity | 4.88E-05 |
| 8 | GO:0051996: squalene synthase activity | 4.88E-05 |
| 9 | GO:0016041: glutamate synthase (ferredoxin) activity | 4.88E-05 |
| 10 | GO:0015173: aromatic amino acid transmembrane transporter activity | 1.20E-04 |
| 11 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 1.20E-04 |
| 12 | GO:0004512: inositol-3-phosphate synthase activity | 1.20E-04 |
| 13 | GO:0008967: phosphoglycolate phosphatase activity | 1.20E-04 |
| 14 | GO:0004310: farnesyl-diphosphate farnesyltransferase activity | 1.20E-04 |
| 15 | GO:0000234: phosphoethanolamine N-methyltransferase activity | 1.20E-04 |
| 16 | GO:0042389: omega-3 fatty acid desaturase activity | 1.20E-04 |
| 17 | GO:0010297: heteropolysaccharide binding | 1.20E-04 |
| 18 | GO:0004148: dihydrolipoyl dehydrogenase activity | 2.06E-04 |
| 19 | GO:0016149: translation release factor activity, codon specific | 3.01E-04 |
| 20 | GO:0004550: nucleoside diphosphate kinase activity | 3.01E-04 |
| 21 | GO:0009882: blue light photoreceptor activity | 3.01E-04 |
| 22 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 4.04E-04 |
| 23 | GO:0008453: alanine-glyoxylate transaminase activity | 4.04E-04 |
| 24 | GO:0004506: squalene monooxygenase activity | 4.04E-04 |
| 25 | GO:0004659: prenyltransferase activity | 4.04E-04 |
| 26 | GO:0005275: amine transmembrane transporter activity | 5.13E-04 |
| 27 | GO:0051538: 3 iron, 4 sulfur cluster binding | 5.13E-04 |
| 28 | GO:0004356: glutamate-ammonia ligase activity | 5.13E-04 |
| 29 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 7.50E-04 |
| 30 | GO:0051753: mannan synthase activity | 7.50E-04 |
| 31 | GO:0004723: calcium-dependent protein serine/threonine phosphatase activity | 7.50E-04 |
| 32 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 1.14E-03 |
| 33 | GO:0008135: translation factor activity, RNA binding | 1.14E-03 |
| 34 | GO:0003747: translation release factor activity | 1.28E-03 |
| 35 | GO:0004805: trehalose-phosphatase activity | 1.59E-03 |
| 36 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 1.75E-03 |
| 37 | GO:0000155: phosphorelay sensor kinase activity | 2.08E-03 |
| 38 | GO:0005262: calcium channel activity | 2.08E-03 |
| 39 | GO:0005528: FK506 binding | 2.81E-03 |
| 40 | GO:0008017: microtubule binding | 3.09E-03 |
| 41 | GO:0033612: receptor serine/threonine kinase binding | 3.20E-03 |
| 42 | GO:0005102: receptor binding | 4.04E-03 |
| 43 | GO:0010181: FMN binding | 4.71E-03 |
| 44 | GO:0050662: coenzyme binding | 4.71E-03 |
| 45 | GO:0048038: quinone binding | 5.18E-03 |
| 46 | GO:0050660: flavin adenine dinucleotide binding | 5.26E-03 |
| 47 | GO:0005509: calcium ion binding | 5.31E-03 |
| 48 | GO:0016791: phosphatase activity | 5.91E-03 |
| 49 | GO:0016759: cellulose synthase activity | 5.91E-03 |
| 50 | GO:0003824: catalytic activity | 6.62E-03 |
| 51 | GO:0009931: calcium-dependent protein serine/threonine kinase activity | 7.20E-03 |
| 52 | GO:0004683: calmodulin-dependent protein kinase activity | 7.48E-03 |
| 53 | GO:0050897: cobalt ion binding | 8.88E-03 |
| 54 | GO:0003746: translation elongation factor activity | 9.47E-03 |
| 55 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.26E-02 |
| 56 | GO:0003777: microtubule motor activity | 1.50E-02 |
| 57 | GO:0005524: ATP binding | 1.62E-02 |
| 58 | GO:0019843: rRNA binding | 2.10E-02 |
| 59 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 2.14E-02 |
| 60 | GO:0016757: transferase activity, transferring glycosyl groups | 2.77E-02 |
| 61 | GO:0042802: identical protein binding | 3.14E-02 |
| 62 | GO:0005515: protein binding | 3.24E-02 |
| 63 | GO:0004674: protein serine/threonine kinase activity | 4.37E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 3.28E-14 |
| 2 | GO:0009941: chloroplast envelope | 1.67E-09 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 8.96E-09 |
| 4 | GO:0048046: apoplast | 1.08E-06 |
| 5 | GO:0009570: chloroplast stroma | 1.29E-06 |
| 6 | GO:0009543: chloroplast thylakoid lumen | 1.08E-05 |
| 7 | GO:0010319: stromule | 1.43E-05 |
| 8 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.98E-05 |
| 9 | GO:0009344: nitrite reductase complex [NAD(P)H] | 4.88E-05 |
| 10 | GO:0009534: chloroplast thylakoid | 6.31E-05 |
| 11 | GO:0030095: chloroplast photosystem II | 8.25E-05 |
| 12 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 1.20E-04 |
| 13 | GO:0042170: plastid membrane | 1.20E-04 |
| 14 | GO:0009654: photosystem II oxygen evolving complex | 1.33E-04 |
| 15 | GO:0009706: chloroplast inner membrane | 1.51E-04 |
| 16 | GO:0009528: plastid inner membrane | 2.06E-04 |
| 17 | GO:0019898: extrinsic component of membrane | 2.90E-04 |
| 18 | GO:0009527: plastid outer membrane | 4.04E-04 |
| 19 | GO:0009707: chloroplast outer membrane | 5.80E-04 |
| 20 | GO:0055028: cortical microtubule | 1.59E-03 |
| 21 | GO:0016324: apical plasma membrane | 1.59E-03 |
| 22 | GO:0010287: plastoglobule | 2.04E-03 |
| 23 | GO:0005623: cell | 2.21E-03 |
| 24 | GO:0005759: mitochondrial matrix | 2.70E-03 |
| 25 | GO:0005758: mitochondrial intermembrane space | 2.81E-03 |
| 26 | GO:0009579: thylakoid | 3.02E-03 |
| 27 | GO:0009532: plastid stroma | 3.20E-03 |
| 28 | GO:0005871: kinesin complex | 4.04E-03 |
| 29 | GO:0009504: cell plate | 4.94E-03 |
| 30 | GO:0016020: membrane | 5.30E-03 |
| 31 | GO:0005694: chromosome | 5.42E-03 |
| 32 | GO:0031969: chloroplast membrane | 5.63E-03 |
| 33 | GO:0005819: spindle | 1.01E-02 |
| 34 | GO:0005887: integral component of plasma membrane | 1.13E-02 |
| 35 | GO:0005747: mitochondrial respiratory chain complex I | 1.61E-02 |
| 36 | GO:0005777: peroxisome | 1.70E-02 |
| 37 | GO:0009524: phragmoplast | 2.18E-02 |
| 38 | GO:0005615: extracellular space | 2.87E-02 |
| 39 | GO:0000139: Golgi membrane | 4.05E-02 |
| 40 | GO:0005874: microtubule | 4.11E-02 |