co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G42310

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090470: shoot organ boundary specification	0.00E+00
2	GO:0051246: regulation of protein metabolic process	0.00E+00
3	GO:0018316: peptide cross-linking via L-cystine	0.00E+00
4	GO:0042817: pyridoxal metabolic process	0.00E+00
5	GO:0006907: pinocytosis	0.00E+00
6	GO:0019685: photosynthesis, dark reaction	0.00E+00
7	GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	0.00E+00
8	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
9	GO:0009658: chloroplast organization	2.05E-07
10	GO:0016123: xanthophyll biosynthetic process	4.42E-07
11	GO:0080005: photosystem stoichiometry adjustment	2.32E-06
12	GO:0071482: cellular response to light stimulus	5.45E-06
13	GO:0009451: RNA modification	1.14E-05
14	GO:0006352: DNA-templated transcription, initiation	1.77E-05
15	GO:2001141: regulation of RNA biosynthetic process	1.93E-05
16	GO:0015995: chlorophyll biosynthetic process	3.46E-05
17	GO:0009902: chloroplast relocation	3.53E-05
18	GO:0016120: carotene biosynthetic process	5.65E-05
19	GO:0048564: photosystem I assembly	1.94E-04
20	GO:0034972: histone H3-R26 methylation	2.22E-04
21	GO:0010322: regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.22E-04
22	GO:0031426: polycistronic mRNA processing	2.22E-04
23	GO:0046900: tetrahydrofolylpolyglutamate metabolic process	2.22E-04
24	GO:1904966: positive regulation of vitamin E biosynthetic process	2.22E-04
25	GO:1904964: positive regulation of phytol biosynthetic process	2.22E-04
26	GO:0034971: histone H3-R17 methylation	2.22E-04
27	GO:0042371: vitamin K biosynthetic process	2.22E-04
28	GO:0071454: cellular response to anoxia	2.22E-04
29	GO:0071461: cellular response to redox state	2.22E-04
30	GO:0034970: histone H3-R2 methylation	2.22E-04
31	GO:0010362: negative regulation of anion channel activity by blue light	2.22E-04
32	GO:0009657: plastid organization	2.40E-04
33	GO:0009793: embryo development ending in seed dormancy	3.94E-04
34	GO:0045036: protein targeting to chloroplast	4.05E-04
35	GO:0048255: mRNA stabilization	4.95E-04
36	GO:1902326: positive regulation of chlorophyll biosynthetic process	4.95E-04
37	GO:0034755: iron ion transmembrane transport	4.95E-04
38	GO:0006435: threonyl-tRNA aminoacylation	4.95E-04
39	GO:0050688: regulation of defense response to virus	4.95E-04
40	GO:0080183: response to photooxidative stress	4.95E-04
41	GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	4.95E-04
42	GO:0080153: negative regulation of reductive pentose-phosphate cycle	4.95E-04
43	GO:0006739: NADP metabolic process	4.95E-04
44	GO:0009767: photosynthetic electron transport chain	6.09E-04
45	GO:0010207: photosystem II assembly	6.86E-04
46	GO:0006013: mannose metabolic process	8.05E-04
47	GO:0002230: positive regulation of defense response to virus by host	8.05E-04
48	GO:1901672: positive regulation of systemic acquired resistance	8.05E-04
49	GO:0006696: ergosterol biosynthetic process	8.05E-04
50	GO:0090307: mitotic spindle assembly	1.15E-03
51	GO:0006809: nitric oxide biosynthetic process	1.15E-03
52	GO:0033014: tetrapyrrole biosynthetic process	1.15E-03
53	GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center	1.15E-03
54	GO:0008615: pyridoxine biosynthetic process	1.15E-03
55	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.15E-03
56	GO:0010371: regulation of gibberellin biosynthetic process	1.15E-03
57	GO:0010239: chloroplast mRNA processing	1.15E-03
58	GO:0016226: iron-sulfur cluster assembly	1.24E-03
59	GO:0031122: cytoplasmic microtubule organization	1.53E-03
60	GO:0071483: cellular response to blue light	1.53E-03
61	GO:0006734: NADH metabolic process	1.53E-03
62	GO:0015743: malate transport	1.53E-03
63	GO:0042274: ribosomal small subunit biogenesis	1.53E-03
64	GO:0031935: regulation of chromatin silencing	1.53E-03
65	GO:0009765: photosynthesis, light harvesting	1.53E-03
66	GO:0016117: carotenoid biosynthetic process	1.58E-03
67	GO:0008033: tRNA processing	1.71E-03
68	GO:0034052: positive regulation of plant-type hypersensitive response	1.95E-03
69	GO:0045038: protein import into chloroplast thylakoid membrane	1.95E-03
70	GO:0006282: regulation of DNA repair	1.95E-03
71	GO:0009616: virus induced gene silencing	1.95E-03
72	GO:0009791: post-embryonic development	2.12E-03
73	GO:0010193: response to ozone	2.26E-03
74	GO:0000741: karyogamy	2.40E-03
75	GO:0010190: cytochrome b6f complex assembly	2.40E-03
76	GO:0009643: photosynthetic acclimation	2.40E-03
77	GO:0010019: chloroplast-nucleus signaling pathway	2.89E-03
78	GO:0051607: defense response to virus	3.08E-03
79	GO:0010050: vegetative phase change	3.40E-03
80	GO:0006401: RNA catabolic process	3.40E-03
81	GO:0009772: photosynthetic electron transport in photosystem II	3.40E-03
82	GO:1900056: negative regulation of leaf senescence	3.40E-03
83	GO:0009816: defense response to bacterium, incompatible interaction	3.45E-03
84	GO:0042255: ribosome assembly	3.94E-03
85	GO:0006402: mRNA catabolic process	3.94E-03
86	GO:0006353: DNA-templated transcription, termination	3.94E-03
87	GO:0009704: de-etiolation	3.94E-03
88	GO:0018298: protein-chromophore linkage	4.25E-03
89	GO:0032544: plastid translation	4.51E-03
90	GO:0010228: vegetative to reproductive phase transition of meristem	4.52E-03
91	GO:0048507: meristem development	5.11E-03
92	GO:0090305: nucleic acid phosphodiester bond hydrolysis	5.11E-03
93	GO:0006783: heme biosynthetic process	5.11E-03
94	GO:0000373: Group II intron splicing	5.11E-03
95	GO:0010380: regulation of chlorophyll biosynthetic process	5.74E-03
96	GO:0031425: chloroplast RNA processing	5.74E-03
97	GO:0010267: production of ta-siRNAs involved in RNA interference	5.74E-03
98	GO:1900426: positive regulation of defense response to bacterium	5.74E-03
99	GO:0009638: phototropism	5.74E-03
100	GO:0006779: porphyrin-containing compound biosynthetic process	5.74E-03
101	GO:0009870: defense response signaling pathway, resistance gene-dependent	6.38E-03
102	GO:0006259: DNA metabolic process	6.38E-03
103	GO:0009744: response to sucrose	6.93E-03
104	GO:0009773: photosynthetic electron transport in photosystem I	7.06E-03
105	GO:0008285: negative regulation of cell proliferation	7.06E-03
106	GO:0006265: DNA topological change	7.06E-03
107	GO:0043085: positive regulation of catalytic activity	7.06E-03
108	GO:0006879: cellular iron ion homeostasis	7.06E-03
109	GO:0045037: protein import into chloroplast stroma	7.76E-03
110	GO:0009725: response to hormone	8.48E-03
111	GO:0055114: oxidation-reduction process	8.66E-03
112	GO:0006541: glutamine metabolic process	9.23E-03
113	GO:0019253: reductive pentose-phosphate cycle	9.23E-03
114	GO:0034605: cellular response to heat	9.23E-03
115	GO:0006364: rRNA processing	9.36E-03
116	GO:0090351: seedling development	1.00E-02
117	GO:0006417: regulation of translation	1.04E-02
118	GO:0010025: wax biosynthetic process	1.08E-02
119	GO:0006863: purine nucleobase transport	1.08E-02
120	GO:0015979: photosynthesis	1.16E-02
121	GO:0007017: microtubule-based process	1.24E-02
122	GO:0010073: meristem maintenance	1.24E-02
123	GO:0080092: regulation of pollen tube growth	1.42E-02
124	GO:0010227: floral organ abscission	1.51E-02
125	GO:0070417: cellular response to cold	1.70E-02
126	GO:0010118: stomatal movement	1.79E-02
127	GO:0009958: positive gravitropism	1.89E-02
128	GO:0010197: polar nucleus fusion	1.89E-02
129	GO:0048868: pollen tube development	1.89E-02
130	GO:0009790: embryo development	1.96E-02
131	GO:0015986: ATP synthesis coupled proton transport	1.99E-02
132	GO:0006814: sodium ion transport	1.99E-02
133	GO:0007059: chromosome segregation	1.99E-02
134	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.19E-02
135	GO:0031047: gene silencing by RNA	2.30E-02
136	GO:0016032: viral process	2.30E-02
137	GO:0032502: developmental process	2.30E-02
138	GO:0010286: heat acclimation	2.63E-02
139	GO:0000910: cytokinesis	2.74E-02
140	GO:0010468: regulation of gene expression	2.76E-02
141	GO:0010027: thylakoid membrane organization	2.85E-02
142	GO:0016126: sterol biosynthetic process	2.85E-02
143	GO:0009735: response to cytokinin	2.94E-02
144	GO:0009416: response to light stimulus	3.29E-02
145	GO:0000160: phosphorelay signal transduction system	3.57E-02
146	GO:0006811: ion transport	3.70E-02
147	GO:0007568: aging	3.82E-02
148	GO:0009910: negative regulation of flower development	3.82E-02
149	GO:0009637: response to blue light	4.08E-02
150	GO:0006810: transport	4.41E-02
151	GO:0080167: response to karrikin	4.42E-02
152	GO:0006457: protein folding	4.52E-02
153	GO:0046777: protein autophosphorylation	4.73E-02
154	GO:0046686: response to cadmium ion	4.80E-02
155	GO:0009640: photomorphogenesis	4.88E-02
156	GO:0010114: response to red light	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
2	GO:0046905: phytoene synthase activity	0.00E+00
3	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
4	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
5	GO:1990534: thermospermine oxidase activity	0.00E+00
6	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
7	GO:0001053: plastid sigma factor activity	1.94E-07
8	GO:0016987: sigma factor activity	1.94E-07
9	GO:0016851: magnesium chelatase activity	1.93E-05
10	GO:0004519: endonuclease activity	2.77E-05
11	GO:0003723: RNA binding	5.89E-05
12	GO:0019899: enzyme binding	1.52E-04
13	GO:0010181: FMN binding	1.80E-04
14	GO:0048038: quinone binding	2.19E-04
15	GO:0004325: ferrochelatase activity	2.22E-04
16	GO:0051996: squalene synthase activity	2.22E-04
17	GO:0052856: NADHX epimerase activity	2.22E-04
18	GO:0008242: omega peptidase activity	2.22E-04
19	GO:0052857: NADPHX epimerase activity	2.22E-04
20	GO:0030941: chloroplast targeting sequence binding	2.22E-04
21	GO:0004654: polyribonucleotide nucleotidyltransferase activity	2.22E-04
22	GO:0046906: tetrapyrrole binding	2.22E-04
23	GO:0004733: pyridoxamine-phosphate oxidase activity	2.22E-04
24	GO:0015367: oxoglutarate:malate antiporter activity	4.95E-04
25	GO:0035241: protein-arginine omega-N monomethyltransferase activity	4.95E-04
26	GO:0004829: threonine-tRNA ligase activity	4.95E-04
27	GO:0034722: gamma-glutamyl-peptidase activity	4.95E-04
28	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	4.95E-04
29	GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity	4.95E-04
30	GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity	4.95E-04
31	GO:0004047: aminomethyltransferase activity	4.95E-04
32	GO:0032947: protein complex scaffold	8.05E-04
33	GO:0004848: ureidoglycolate hydrolase activity	8.05E-04
34	GO:0004148: dihydrolipoyl dehydrogenase activity	8.05E-04
35	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	8.05E-04
36	GO:0008469: histone-arginine N-methyltransferase activity	8.05E-04
37	GO:0004180: carboxypeptidase activity	8.05E-04
38	GO:0010277: chlorophyllide a oxygenase [overall] activity	8.05E-04
39	GO:0048027: mRNA 5'-UTR binding	1.15E-03
40	GO:0009882: blue light photoreceptor activity	1.15E-03
41	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.36E-03
42	GO:0003727: single-stranded RNA binding	1.46E-03
43	GO:0043495: protein anchor	1.53E-03
44	GO:0051861: glycolipid binding	1.53E-03
45	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.53E-03
46	GO:0043015: gamma-tubulin binding	1.53E-03
47	GO:0008080: N-acetyltransferase activity	1.84E-03
48	GO:0051011: microtubule minus-end binding	1.95E-03
49	GO:0019843: rRNA binding	2.83E-03
50	GO:0015631: tubulin binding	2.89E-03
51	GO:0004559: alpha-mannosidase activity	2.89E-03
52	GO:0016491: oxidoreductase activity	3.76E-03
53	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	4.51E-03
54	GO:0005381: iron ion transmembrane transporter activity	5.74E-03
55	GO:0042802: identical protein binding	5.78E-03
56	GO:0005089: Rho guanyl-nucleotide exchange factor activity	7.06E-03
57	GO:0051537: 2 iron, 2 sulfur cluster binding	7.50E-03
58	GO:0000175: 3'-5'-exoribonuclease activity	8.48E-03
59	GO:0031072: heat shock protein binding	8.48E-03
60	GO:0000155: phosphorelay sensor kinase activity	8.48E-03
61	GO:0008131: primary amine oxidase activity	9.23E-03
62	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	9.23E-03
63	GO:0008061: chitin binding	1.00E-02
64	GO:0003887: DNA-directed DNA polymerase activity	1.08E-02
65	GO:0051536: iron-sulfur cluster binding	1.16E-02
66	GO:0005345: purine nucleobase transmembrane transporter activity	1.24E-02
67	GO:0004176: ATP-dependent peptidase activity	1.33E-02
68	GO:0051082: unfolded protein binding	1.34E-02
69	GO:0022891: substrate-specific transmembrane transporter activity	1.51E-02
70	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.72E-02
71	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.89E-02
72	GO:0004872: receptor activity	2.09E-02
73	GO:0004518: nuclease activity	2.30E-02
74	GO:0005506: iron ion binding	2.47E-02
75	GO:0008483: transaminase activity	2.63E-02
76	GO:0008237: metallopeptidase activity	2.63E-02
77	GO:0005200: structural constituent of cytoskeleton	2.63E-02
78	GO:0016887: ATPase activity	2.78E-02
79	GO:0016168: chlorophyll binding	2.97E-02
80	GO:0008236: serine-type peptidase activity	3.32E-02
81	GO:0004222: metalloendopeptidase activity	3.70E-02
82	GO:0050897: cobalt ion binding	3.82E-02
83	GO:0016740: transferase activity	4.20E-02
84	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.62E-02
85	GO:0004185: serine-type carboxypeptidase activity	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.13E-29
2	GO:0009535: chloroplast thylakoid membrane	7.76E-12
3	GO:0031969: chloroplast membrane	6.15E-05
4	GO:0042651: thylakoid membrane	6.72E-05
5	GO:0009570: chloroplast stroma	9.81E-05
6	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.91E-04
7	GO:0009706: chloroplast inner membrane	3.25E-04
8	GO:0005623: cell	4.83E-04
9	GO:0080085: signal recognition particle, chloroplast targeting	4.95E-04
10	GO:0008274: gamma-tubulin ring complex	4.95E-04
11	GO:0010007: magnesium chelatase complex	8.05E-04
12	GO:0009941: chloroplast envelope	9.08E-04
13	GO:0009536: plastid	9.57E-04
14	GO:0000923: equatorial microtubule organizing center	1.15E-03
15	GO:0030286: dynein complex	1.53E-03
16	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	1.53E-03
17	GO:0055035: plastid thylakoid membrane	1.95E-03
18	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	2.40E-03
19	GO:0005655: nucleolar ribonuclease P complex	2.89E-03
20	GO:0009295: nucleoid	2.91E-03
21	GO:0031359: integral component of chloroplast outer membrane	3.40E-03
22	GO:0009707: chloroplast outer membrane	4.25E-03
23	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	4.51E-03
24	GO:0046930: pore complex	4.51E-03
25	GO:0042644: chloroplast nucleoid	5.11E-03
26	GO:0000922: spindle pole	5.11E-03
27	GO:0016324: apical plasma membrane	6.38E-03
28	GO:0048471: perinuclear region of cytoplasm	7.06E-03
29	GO:0009508: plastid chromosome	8.48E-03
30	GO:0030095: chloroplast photosystem II	9.23E-03
31	GO:0043234: protein complex	1.08E-02
32	GO:0005875: microtubule associated complex	1.08E-02
33	GO:0009579: thylakoid	1.15E-02
34	GO:0009532: plastid stroma	1.33E-02
35	GO:0010287: plastoglobule	1.59E-02
36	GO:0009543: chloroplast thylakoid lumen	1.67E-02
37	GO:0043231: intracellular membrane-bounded organelle	1.81E-02
38	GO:0009523: photosystem II	2.09E-02
39	GO:0010319: stromule	2.63E-02
40	GO:0009505: plant-type cell wall	3.51E-02
41	GO:0009534: chloroplast thylakoid	4.15E-02
42	GO:0005739: mitochondrion	4.37E-02
43	GO:0031977: thylakoid lumen	4.61E-02