gene detail

Gene description

TAIR ID: AT5G35630

Short description: glutamine synthetase 2

Pathogen responsiveness: -1.14

General responsiveness: 1.75

Orthologous

Rice:

OS04G0659100 OS02G0735200

Maize:

GRMZM2G098290

Wheat: No orthologous gene

GO biological process

response to cytokinin, response to cadmium ion, aging, response to salt stress, ammonia assimilation cycle, glutamine biosynthetic process

GO cellular component

chloroplast stroma, chloroplast envelope, chloroplast, cytosolic ribosome, thylakoid, chloroplast thylakoid membrane, mitochondrion, membrane, apoplast

GO molecular function

glutamate-ammonia ligase activity, ATP binding

Protein domain

Pfam	PF00120, Glutamine synthetase, catalytic domain
Pfam	PF03951, Glutamine synthetase, beta-Grasp domain
SMART	SM01230, Gln-synt_C

Metabolic pathway

PWY-381: nitrate reduction II (assimilatory)
GLNSYN-PWY: glutamine biosynthesis I
PWY-7061: glutamate-glutamine shuttle
PWY-6549: glutamine biosynthesis III
PWY-6964: ammonia assimilation cycle II
PWY-3282: superpathway of ammonia assimilation (plants)
PWY-7060: ornithine-citrulline shuttle
PWY-6963: ammonia assimilation cycle I

KEGG pathway

PATH:ath01230: Biosynthesis of amino acids
PATH:ath00630: Glyoxylate and dicarboxylate metabolism
PATH:ath00910: Nitrogen metabolism
PATH:ath00250: Alanine, aspartate and glutamate metabolism
PATH:ath00220: Arginine biosynthesis

Transcriptional regulation

Regulator:
AT5G07100, AT1G62300, AT5G22570, AT2G46130

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 10 (Top20%)

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

13 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-1.75	3.13E-09
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-1.58	1.82E-02
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-1.80	2.06E-10
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-1.72	3.54E-10
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-1.53	4.69E-04
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	-1.79	5.36E-06
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	-2.25	1.55E-10
GSE56094	Col, WT, control 11 h	Col, WT, PstDC3000 11 h	-2.15	1.17E-09
GSE56094	Col, WT, control 11 h	Col, WT, hrpA- 11 h	-1.96	9.13E-08
GSE56094	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-1.57	4.97E-06
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	-1.69	7.31E-07
GSE56094	Col, WT, control 6 h	Col, WT, PstDC3000 6 h	-1.54	2.68E-05
GSE56094	Col, WT, control 9 h	Col, WT, PstDC3000 9 h	-1.75	7.05E-07