gene detail

Gene description

Short description: Glutamine synthetase shoot isozyme, chloroplast precursor (EC 6.3.1.2) (Glutamate--ammonia ligase) (Clone lambda-GS31).

Orthologous

Arabidopsis:

AT5G35630

Maize:

GRMZM2G098290

Wheat: No orthologous

GO biological process

glutamine biosynthetic process (GO:0006542), nitrogen compound metabolic process (GO:0006807)

GO cellular component

unknown

GO molecular function

catalytic activity (GO:0003824), glutamate-ammonia ligase activity (GO:0004356)

Protein domain

Pfam	PF03951, Glutamine synthetase, beta-Grasp domain
Pfam	PF00120, Glutamine synthetase, catalytic domain
SMART	SM01230, Gln-synt_C

Metabolic pathway

PWY-381: nitrate reduction II (assimilatory)
GLNSYN-PWY: glutamine biosynthesis I
PWY-6549: glutamine biosynthesis III
PWY-6964: ammonia assimilation cycle II
PWY-3282: superpathway of ammonia assimilation (plants)
PWY-6963: ammonia assimilation cycle I

KEGG pathway

PATH:dosa01230: Biosynthesis of amino acids
PATH:dosa00630: Glyoxylate and dicarboxylate metabolism
PATH:dosa00910: Nitrogen metabolism
PATH:dosa00250: Alanine, aspartate and glutamate metabolism
PATH:dosa00220: Arginine biosynthesis

Coexpression network

GSE62895_S_15B_ROOT  view
GSE63047_T7174R  view
GSE33411_IRBB5  view
GSE16793_XOO  view
GSE16793_XOC  view
GSE62894_S_77  view
GSE33411_IRBB7  view
GSE62893_S_15B  view
GSE62893_R_15B  view
GSE62895_R_15B_ROOT  view
GSE62894_R_77  view
GSE63047_DELTAHRCV  view
GSE33411_IR24  view

Differentially expressed condition

19 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE19239	Japonica 9804, Rxo1, control	Japonica 9804, Rxo1, X. oryzae pv. oryzicola	-1.51	2.81E-02
GSE30941	Nipponbare, Mock 24 h	Nipponbare, Magnaporthe grisea CL367 24 h	1.69	2.33E-02
GSE30941	Nipponbare, Mock 24 h	Nipponbare, Magnaporthe grisea FR13 24 h	2.78	1.78E-04
GSE33411	IR24, control	IR24, Xanthomonas oryzae pv. oryzae 3 h	-1.63	1.39E-05
GSE33411	IRBB5, control	IRBB5, Xanthomonas oryzae pv. oryzae 3 h	-1.66	1.08E-05
GSE36272	IR24, MOCK	IR24, Xanthomonas oryzae strain PXO86	-1.78	2.20E-03
GSE36272	IR24, MOCK	IR24, Xanthomonas oryzae strain _PXO99A	-2.80	2.09E-06
GSE36272	IR24, MOCK	IR24, Xanthomonas oryzae strain PXO99AME5	-3.02	5.55E-07
GSE36272	IR24, MOCK	IR24, Xanthomonas oryzae strain PXO99A_2	-2.13	1.45E-04
GSE36272	Nipponbare, MOCK	Nipponbare, Xanthomonas oryzae strain T7174	-2.36	4.99E-05
GSE62894	Nipponbare, Pish, water 3 d	Nipponbare, Pish, Magnaporthe oryzae Kyu77-07A 3 d	-2.49	5.07E-03
GSE62894	Nipponbare, Pish, water 5 d	Nipponbare, Pish, Magnaporthe oryzae Kyu77-07A 5 d	-2.12	1.87E-02
GSE62894	Nipponbare, pish, water 5 d	Nipponbare, pish, Magnaporthe oryzae Kyu77-07A 5 d	-6.21	3.25E-10
GSE62895	Nipponbare, Pia, water 3 d	Nipponbare, Pia, Magnaporthe oryzae P91-15B 3 d	-3.30	9.24E-03
GSE62895	Nipponbare, pia, water 3 d	Nipponbare, pia, Magnaporthe oryzae P91-15B 3 d	-4.19	1.77E-03
GSE62895	Nipponbare, pia, water 5 d	Nipponbare, pia, Magnaporthe oryzae P91-15B 5 d	-2.87	2.47E-02
GSE63047	Nipponbare, water 7 d	Nipponbare, Xanthomonas oryzae T7174R 7 d	-4.78	1.80E-16
GSE63337	Nipponbare, Osaba1_1, Xanthomonas oryzae pv. Oryzae PXO99 0 h	Nipponbare, Osaba1_1, Xanthomonas oryzae pv. Oryzae PXO99 72 h	-1.56	1.21E-04
GSE7256	Nipponbare, Mock 4 d	Nipponbare, Magnaporthe grisea FR13 5 d	-2.63	1.17E-02