GO Enrichment Analysis of Co-expressed Genes with
AT5G35630
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 2 | GO:0090706: specification of plant organ position | 0.00E+00 |
| 3 | GO:1901918: negative regulation of exoribonuclease activity | 0.00E+00 |
| 4 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 5 | GO:0046677: response to antibiotic | 0.00E+00 |
| 6 | GO:0005996: monosaccharide metabolic process | 0.00E+00 |
| 7 | GO:0009735: response to cytokinin | 5.02E-09 |
| 8 | GO:0018119: peptidyl-cysteine S-nitrosylation | 2.06E-06 |
| 9 | GO:0015979: photosynthesis | 2.66E-06 |
| 10 | GO:0019253: reductive pentose-phosphate cycle | 4.19E-06 |
| 11 | GO:0045727: positive regulation of translation | 7.45E-06 |
| 12 | GO:0010019: chloroplast-nucleus signaling pathway | 2.69E-05 |
| 13 | GO:0009409: response to cold | 5.26E-05 |
| 14 | GO:0009657: plastid organization | 6.09E-05 |
| 15 | GO:0032544: plastid translation | 6.09E-05 |
| 16 | GO:0043489: RNA stabilization | 8.96E-05 |
| 17 | GO:0042371: vitamin K biosynthetic process | 8.96E-05 |
| 18 | GO:0010450: inflorescence meristem growth | 8.96E-05 |
| 19 | GO:0071588: hydrogen peroxide mediated signaling pathway | 8.96E-05 |
| 20 | GO:0010205: photoinhibition | 9.17E-05 |
| 21 | GO:0006006: glucose metabolic process | 1.73E-04 |
| 22 | GO:0010207: photosystem II assembly | 1.97E-04 |
| 23 | GO:0034755: iron ion transmembrane transport | 2.12E-04 |
| 24 | GO:0050992: dimethylallyl diphosphate biosynthetic process | 2.12E-04 |
| 25 | GO:0080151: positive regulation of salicylic acid mediated signaling pathway | 2.12E-04 |
| 26 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 2.12E-04 |
| 27 | GO:0006636: unsaturated fatty acid biosynthetic process | 2.49E-04 |
| 28 | GO:0006013: mannose metabolic process | 3.54E-04 |
| 29 | GO:0006696: ergosterol biosynthetic process | 3.54E-04 |
| 30 | GO:0045165: cell fate commitment | 3.54E-04 |
| 31 | GO:0006000: fructose metabolic process | 3.54E-04 |
| 32 | GO:0009800: cinnamic acid biosynthetic process | 5.10E-04 |
| 33 | GO:0051513: regulation of monopolar cell growth | 5.10E-04 |
| 34 | GO:0042631: cellular response to water deprivation | 5.13E-04 |
| 35 | GO:2000038: regulation of stomatal complex development | 6.78E-04 |
| 36 | GO:0015976: carbon utilization | 6.78E-04 |
| 37 | GO:0015994: chlorophyll metabolic process | 6.78E-04 |
| 38 | GO:0042742: defense response to bacterium | 8.24E-04 |
| 39 | GO:0043097: pyrimidine nucleoside salvage | 8.59E-04 |
| 40 | GO:0045038: protein import into chloroplast thylakoid membrane | 8.59E-04 |
| 41 | GO:0006461: protein complex assembly | 8.59E-04 |
| 42 | GO:1902183: regulation of shoot apical meristem development | 8.59E-04 |
| 43 | GO:0010158: abaxial cell fate specification | 8.59E-04 |
| 44 | GO:0032876: negative regulation of DNA endoreduplication | 8.59E-04 |
| 45 | GO:0030308: negative regulation of cell growth | 8.59E-04 |
| 46 | GO:0007623: circadian rhythm | 8.76E-04 |
| 47 | GO:0006559: L-phenylalanine catabolic process | 1.05E-03 |
| 48 | GO:0006206: pyrimidine nucleobase metabolic process | 1.05E-03 |
| 49 | GO:0042549: photosystem II stabilization | 1.05E-03 |
| 50 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 1.05E-03 |
| 51 | GO:0015995: chlorophyll biosynthetic process | 1.12E-03 |
| 52 | GO:2000037: regulation of stomatal complex patterning | 1.25E-03 |
| 53 | GO:0006412: translation | 1.36E-03 |
| 54 | GO:0009631: cold acclimation | 1.42E-03 |
| 55 | GO:0050829: defense response to Gram-negative bacterium | 1.46E-03 |
| 56 | GO:0009772: photosynthetic electron transport in photosystem II | 1.46E-03 |
| 57 | GO:0006402: mRNA catabolic process | 1.69E-03 |
| 58 | GO:0009850: auxin metabolic process | 1.69E-03 |
| 59 | GO:0000028: ribosomal small subunit assembly | 1.69E-03 |
| 60 | GO:0010093: specification of floral organ identity | 1.93E-03 |
| 61 | GO:0009699: phenylpropanoid biosynthetic process | 1.93E-03 |
| 62 | GO:0006002: fructose 6-phosphate metabolic process | 1.93E-03 |
| 63 | GO:0009744: response to sucrose | 2.00E-03 |
| 64 | GO:0009644: response to high light intensity | 2.16E-03 |
| 65 | GO:0010206: photosystem II repair | 2.18E-03 |
| 66 | GO:2000024: regulation of leaf development | 2.18E-03 |
| 67 | GO:0000373: Group II intron splicing | 2.18E-03 |
| 68 | GO:0009051: pentose-phosphate shunt, oxidative branch | 2.18E-03 |
| 69 | GO:0006364: rRNA processing | 2.67E-03 |
| 70 | GO:0009299: mRNA transcription | 2.70E-03 |
| 71 | GO:0006949: syncytium formation | 2.70E-03 |
| 72 | GO:0006417: regulation of translation | 2.96E-03 |
| 73 | GO:0019684: photosynthesis, light reaction | 2.98E-03 |
| 74 | GO:0009089: lysine biosynthetic process via diaminopimelate | 2.98E-03 |
| 75 | GO:0043085: positive regulation of catalytic activity | 2.98E-03 |
| 76 | GO:0006879: cellular iron ion homeostasis | 2.98E-03 |
| 77 | GO:0000272: polysaccharide catabolic process | 2.98E-03 |
| 78 | GO:0009750: response to fructose | 2.98E-03 |
| 79 | GO:0009698: phenylpropanoid metabolic process | 2.98E-03 |
| 80 | GO:0009773: photosynthetic electron transport in photosystem I | 2.98E-03 |
| 81 | GO:0006096: glycolytic process | 3.15E-03 |
| 82 | GO:0008361: regulation of cell size | 3.26E-03 |
| 83 | GO:0005983: starch catabolic process | 3.26E-03 |
| 84 | GO:0006397: mRNA processing | 3.40E-03 |
| 85 | GO:2000028: regulation of photoperiodism, flowering | 3.56E-03 |
| 86 | GO:0009725: response to hormone | 3.56E-03 |
| 87 | GO:0006094: gluconeogenesis | 3.56E-03 |
| 88 | GO:0009767: photosynthetic electron transport chain | 3.56E-03 |
| 89 | GO:0005986: sucrose biosynthetic process | 3.56E-03 |
| 90 | GO:0008152: metabolic process | 3.65E-03 |
| 91 | GO:0042545: cell wall modification | 3.68E-03 |
| 92 | GO:0009933: meristem structural organization | 3.86E-03 |
| 93 | GO:0006396: RNA processing | 3.90E-03 |
| 94 | GO:0009944: polarity specification of adaxial/abaxial axis | 4.83E-03 |
| 95 | GO:0031408: oxylipin biosynthetic process | 5.52E-03 |
| 96 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 6.23E-03 |
| 97 | GO:0045490: pectin catabolic process | 6.52E-03 |
| 98 | GO:0006284: base-excision repair | 6.61E-03 |
| 99 | GO:0006810: transport | 6.68E-03 |
| 100 | GO:0016117: carotenoid biosynthetic process | 6.99E-03 |
| 101 | GO:0000413: protein peptidyl-prolyl isomerization | 7.37E-03 |
| 102 | GO:0010154: fruit development | 7.77E-03 |
| 103 | GO:0000302: response to reactive oxygen species | 8.99E-03 |
| 104 | GO:0009826: unidimensional cell growth | 9.73E-03 |
| 105 | GO:0010090: trichome morphogenesis | 9.85E-03 |
| 106 | GO:0009658: chloroplast organization | 1.01E-02 |
| 107 | GO:0009828: plant-type cell wall loosening | 1.03E-02 |
| 108 | GO:0016311: dephosphorylation | 1.36E-02 |
| 109 | GO:0018298: protein-chromophore linkage | 1.41E-02 |
| 110 | GO:0000160: phosphorelay signal transduction system | 1.46E-02 |
| 111 | GO:0006979: response to oxidative stress | 1.65E-02 |
| 112 | GO:0045087: innate immune response | 1.66E-02 |
| 113 | GO:0034599: cellular response to oxidative stress | 1.72E-02 |
| 114 | GO:0010114: response to red light | 1.99E-02 |
| 115 | GO:0009664: plant-type cell wall organization | 2.34E-02 |
| 116 | GO:0009585: red, far-red light phototransduction | 2.46E-02 |
| 117 | GO:0009736: cytokinin-activated signaling pathway | 2.46E-02 |
| 118 | GO:0055114: oxidation-reduction process | 2.54E-02 |
| 119 | GO:0009909: regulation of flower development | 2.65E-02 |
| 120 | GO:0046686: response to cadmium ion | 2.85E-02 |
| 121 | GO:0009626: plant-type hypersensitive response | 2.90E-02 |
| 122 | GO:0009740: gibberellic acid mediated signaling pathway | 3.03E-02 |
| 123 | GO:0009416: response to light stimulus | 3.29E-02 |
| 124 | GO:0009742: brassinosteroid mediated signaling pathway | 3.30E-02 |
| 125 | GO:0009611: response to wounding | 3.37E-02 |
| 126 | GO:0045893: positive regulation of transcription, DNA-templated | 3.78E-02 |
| 127 | GO:0009058: biosynthetic process | 3.85E-02 |
| 128 | GO:0042744: hydrogen peroxide catabolic process | 4.07E-02 |
| 129 | GO:0006457: protein folding | 4.25E-02 |
| 130 | GO:0006633: fatty acid biosynthetic process | 4.36E-02 |
| 131 | GO:0040008: regulation of growth | 4.51E-02 |
| 132 | GO:0009451: RNA modification | 4.74E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046905: phytoene synthase activity | 0.00E+00 |
| 2 | GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity | 0.00E+00 |
| 3 | GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity | 0.00E+00 |
| 4 | GO:0008974: phosphoribulokinase activity | 0.00E+00 |
| 5 | GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity | 0.00E+00 |
| 6 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 7 | GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity | 0.00E+00 |
| 8 | GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity | 0.00E+00 |
| 9 | GO:0019843: rRNA binding | 2.35E-09 |
| 10 | GO:0008266: poly(U) RNA binding | 4.19E-06 |
| 11 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.27E-05 |
| 12 | GO:0051996: squalene synthase activity | 8.96E-05 |
| 13 | GO:0045485: omega-6 fatty acid desaturase activity | 8.96E-05 |
| 14 | GO:0052638: indole-3-butyrate beta-glucosyltransferase activity | 8.96E-05 |
| 15 | GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity | 8.96E-05 |
| 16 | GO:0046906: tetrapyrrole binding | 8.96E-05 |
| 17 | GO:0003735: structural constituent of ribosome | 1.49E-04 |
| 18 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 2.12E-04 |
| 19 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 2.12E-04 |
| 20 | GO:0004310: farnesyl-diphosphate farnesyltransferase activity | 2.12E-04 |
| 21 | GO:0047746: chlorophyllase activity | 2.12E-04 |
| 22 | GO:0004618: phosphoglycerate kinase activity | 2.12E-04 |
| 23 | GO:0010297: heteropolysaccharide binding | 2.12E-04 |
| 24 | GO:0043425: bHLH transcription factor binding | 2.12E-04 |
| 25 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 2.12E-04 |
| 26 | GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity | 2.12E-04 |
| 27 | GO:0005528: FK506 binding | 2.77E-04 |
| 28 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 3.54E-04 |
| 29 | GO:0045548: phenylalanine ammonia-lyase activity | 3.54E-04 |
| 30 | GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity | 5.10E-04 |
| 31 | GO:0050662: coenzyme binding | 5.92E-04 |
| 32 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 6.78E-04 |
| 33 | GO:0051538: 3 iron, 4 sulfur cluster binding | 8.59E-04 |
| 34 | GO:0008725: DNA-3-methyladenine glycosylase activity | 8.59E-04 |
| 35 | GO:0016688: L-ascorbate peroxidase activity | 1.05E-03 |
| 36 | GO:0004130: cytochrome-c peroxidase activity | 1.05E-03 |
| 37 | GO:0004849: uridine kinase activity | 1.25E-03 |
| 38 | GO:0004559: alpha-mannosidase activity | 1.25E-03 |
| 39 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 1.25E-03 |
| 40 | GO:0019899: enzyme binding | 1.46E-03 |
| 41 | GO:0050661: NADP binding | 1.77E-03 |
| 42 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 1.93E-03 |
| 43 | GO:0005381: iron ion transmembrane transporter activity | 2.43E-03 |
| 44 | GO:0045330: aspartyl esterase activity | 2.96E-03 |
| 45 | GO:0004089: carbonate dehydratase activity | 3.56E-03 |
| 46 | GO:0031072: heat shock protein binding | 3.56E-03 |
| 47 | GO:0030599: pectinesterase activity | 3.57E-03 |
| 48 | GO:0008146: sulfotransferase activity | 4.18E-03 |
| 49 | GO:0022891: substrate-specific transmembrane transporter activity | 6.23E-03 |
| 50 | GO:0003756: protein disulfide isomerase activity | 6.61E-03 |
| 51 | GO:0003727: single-stranded RNA binding | 6.61E-03 |
| 52 | GO:0000156: phosphorelay response regulator activity | 9.85E-03 |
| 53 | GO:0016597: amino acid binding | 1.12E-02 |
| 54 | GO:0016787: hydrolase activity | 1.18E-02 |
| 55 | GO:0016168: chlorophyll binding | 1.21E-02 |
| 56 | GO:0004222: metalloendopeptidase activity | 1.51E-02 |
| 57 | GO:0004185: serine-type carboxypeptidase activity | 1.99E-02 |
| 58 | GO:0051537: 2 iron, 2 sulfur cluster binding | 2.10E-02 |
| 59 | GO:0043621: protein self-association | 2.10E-02 |
| 60 | GO:0051287: NAD binding | 2.28E-02 |
| 61 | GO:0003729: mRNA binding | 2.69E-02 |
| 62 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 2.84E-02 |
| 63 | GO:0003723: RNA binding | 2.89E-02 |
| 64 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 2.96E-02 |
| 65 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 2.96E-02 |
| 66 | GO:0051082: unfolded protein binding | 3.16E-02 |
| 67 | GO:0005515: protein binding | 3.22E-02 |
| 68 | GO:0016758: transferase activity, transferring hexosyl groups | 3.64E-02 |
| 69 | GO:0046872: metal ion binding | 3.74E-02 |
| 70 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 3.78E-02 |
| 71 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 4.44E-02 |
| 72 | GO:0046910: pectinesterase inhibitor activity | 4.44E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005943: phosphatidylinositol 3-kinase complex, class IA | 0.00E+00 |
| 2 | GO:0009547: plastid ribosome | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 4.67E-30 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 3.15E-25 |
| 5 | GO:0009570: chloroplast stroma | 6.20E-24 |
| 6 | GO:0009941: chloroplast envelope | 1.38E-21 |
| 7 | GO:0009534: chloroplast thylakoid | 6.35E-17 |
| 8 | GO:0009579: thylakoid | 1.91E-15 |
| 9 | GO:0009543: chloroplast thylakoid lumen | 5.34E-11 |
| 10 | GO:0010319: stromule | 2.21E-08 |
| 11 | GO:0030095: chloroplast photosystem II | 4.10E-08 |
| 12 | GO:0031969: chloroplast membrane | 1.79E-06 |
| 13 | GO:0010287: plastoglobule | 2.30E-06 |
| 14 | GO:0000312: plastid small ribosomal subunit | 4.19E-06 |
| 15 | GO:0009523: photosystem II | 3.07E-05 |
| 16 | GO:0009706: chloroplast inner membrane | 3.45E-05 |
| 17 | GO:0030529: intracellular ribonucleoprotein complex | 6.12E-05 |
| 18 | GO:0009344: nitrite reductase complex [NAD(P)H] | 8.96E-05 |
| 19 | GO:0000311: plastid large ribosomal subunit | 1.50E-04 |
| 20 | GO:0080085: signal recognition particle, chloroplast targeting | 2.12E-04 |
| 21 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 2.12E-04 |
| 22 | GO:0009654: photosystem II oxygen evolving complex | 3.07E-04 |
| 23 | GO:0042646: plastid nucleoid | 5.10E-04 |
| 24 | GO:0048046: apoplast | 6.23E-04 |
| 25 | GO:0019898: extrinsic component of membrane | 6.33E-04 |
| 26 | GO:0009295: nucleoid | 8.61E-04 |
| 27 | GO:0005762: mitochondrial large ribosomal subunit | 1.25E-03 |
| 28 | GO:0016363: nuclear matrix | 1.25E-03 |
| 29 | GO:0009533: chloroplast stromal thylakoid | 1.46E-03 |
| 30 | GO:0009538: photosystem I reaction center | 1.69E-03 |
| 31 | GO:0031977: thylakoid lumen | 1.84E-03 |
| 32 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 1.93E-03 |
| 33 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.18E-03 |
| 34 | GO:0005763: mitochondrial small ribosomal subunit | 2.18E-03 |
| 35 | GO:0016020: membrane | 3.69E-03 |
| 36 | GO:0005840: ribosome | 4.01E-03 |
| 37 | GO:0042651: thylakoid membrane | 5.17E-03 |
| 38 | GO:0022627: cytosolic small ribosomal subunit | 8.64E-03 |
| 39 | GO:0005618: cell wall | 9.10E-03 |
| 40 | GO:0071944: cell periphery | 9.85E-03 |
| 41 | GO:0015934: large ribosomal subunit | 1.56E-02 |
| 42 | GO:0009505: plant-type cell wall | 2.17E-02 |
| 43 | GO:0005623: cell | 3.78E-02 |
| 44 | GO:0005777: peroxisome | 3.78E-02 |