gene detail

Gene description

TAIR ID: AT5G13270

Short description: Pentatricopeptide repeat (PPR) superfamily protein

Pathogen responsiveness: -2.46

General responsiveness: -1.69

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

chloroplast RNA modification, chloroplast RNA processing, RNA modification

GO cellular component

chloroplast

GO molecular function

zinc ion binding, RNA binding, endonuclease activity

Protein domain

Pfam	PF01535, PPR repeat
Pfam	PF14432, DYW family of nucleic acid deaminases
Pfam	PF13041, PPR repeat family

Metabolic pathway

PWY-3781: aerobic respiration (cytochrome c)

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G47230, AT5G13790, AT3G15210, AT5G47220, AT1G50640, AT4G36990, AT4G17500

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 1

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2 view
GSE26679_WT_GC view

Differentially expressed condition

1 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.59	8.58E-03