Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G04900

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0033614: chloroplast proton-transporting ATP synthase complex assembly0.00E+00
2GO:0046471: phosphatidylglycerol metabolic process0.00E+00
3GO:1905157: positive regulation of photosynthesis0.00E+00
4GO:0097275: cellular ammonia homeostasis0.00E+00
5GO:1901918: negative regulation of exoribonuclease activity0.00E+00
6GO:0051924: regulation of calcium ion transport0.00E+00
7GO:0009773: photosynthetic electron transport in photosystem I2.23E-05
8GO:0015995: chlorophyll biosynthetic process4.57E-05
9GO:0015979: photosynthesis1.21E-04
10GO:1901259: chloroplast rRNA processing1.34E-04
11GO:0006353: DNA-templated transcription, termination2.25E-04
12GO:0009090: homoserine biosynthetic process2.46E-04
13GO:1905039: carboxylic acid transmembrane transport2.46E-04
14GO:1905200: gibberellic acid transmembrane transport2.46E-04
15GO:0019276: UDP-N-acetylgalactosamine metabolic process2.46E-04
16GO:0010028: xanthophyll cycle2.46E-04
17GO:0034337: RNA folding2.46E-04
18GO:0000023: maltose metabolic process2.46E-04
19GO:0006047: UDP-N-acetylglucosamine metabolic process2.46E-04
20GO:0000025: maltose catabolic process2.46E-04
21GO:0080112: seed growth2.46E-04
22GO:0005980: glycogen catabolic process2.46E-04
23GO:0055114: oxidation-reduction process3.60E-04
24GO:0005982: starch metabolic process3.99E-04
25GO:0006898: receptor-mediated endocytosis5.44E-04
26GO:0005976: polysaccharide metabolic process5.44E-04
27GO:0010353: response to trehalose5.44E-04
28GO:0016122: xanthophyll metabolic process5.44E-04
29GO:0030388: fructose 1,6-bisphosphate metabolic process5.44E-04
30GO:0015804: neutral amino acid transport5.44E-04
31GO:0080029: cellular response to boron-containing substance levels5.44E-04
32GO:0005983: starch catabolic process6.18E-04
33GO:0006094: gluconeogenesis7.00E-04
34GO:0010207: photosystem II assembly7.88E-04
35GO:0006048: UDP-N-acetylglucosamine biosynthetic process8.83E-04
36GO:0006518: peptide metabolic process8.83E-04
37GO:0006696: ergosterol biosynthetic process8.83E-04
38GO:0006000: fructose metabolic process8.83E-04
39GO:0006636: unsaturated fatty acid biosynthetic process9.77E-04
40GO:0010114: response to red light1.12E-03
41GO:0009768: photosynthesis, light harvesting in photosystem I1.19E-03
42GO:0046713: borate transport1.26E-03
43GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.26E-03
44GO:0009067: aspartate family amino acid biosynthetic process1.26E-03
45GO:1902358: sulfate transmembrane transport1.26E-03
46GO:0045338: farnesyl diphosphate metabolic process1.26E-03
47GO:0006020: inositol metabolic process1.26E-03
48GO:0009152: purine ribonucleotide biosynthetic process1.26E-03
49GO:0010601: positive regulation of auxin biosynthetic process1.26E-03
50GO:0046653: tetrahydrofolate metabolic process1.26E-03
51GO:0009052: pentose-phosphate shunt, non-oxidative branch1.26E-03
52GO:0006021: inositol biosynthetic process1.68E-03
53GO:0071483: cellular response to blue light1.68E-03
54GO:0010021: amylopectin biosynthetic process1.68E-03
55GO:0009765: photosynthesis, light harvesting1.68E-03
56GO:0006109: regulation of carbohydrate metabolic process1.68E-03
57GO:0015994: chlorophyll metabolic process1.68E-03
58GO:0006662: glycerol ether metabolic process2.12E-03
59GO:0006656: phosphatidylcholine biosynthetic process2.15E-03
60GO:0006564: L-serine biosynthetic process2.15E-03
61GO:0009904: chloroplast accumulation movement2.15E-03
62GO:0019252: starch biosynthetic process2.44E-03
63GO:1902456: regulation of stomatal opening2.65E-03
64GO:0010190: cytochrome b6f complex assembly2.65E-03
65GO:0046855: inositol phosphate dephosphorylation2.65E-03
66GO:0009643: photosynthetic acclimation2.65E-03
67GO:0042549: photosystem II stabilization2.65E-03
68GO:0032502: developmental process2.78E-03
69GO:1901657: glycosyl compound metabolic process2.97E-03
70GO:0009903: chloroplast avoidance movement3.18E-03
71GO:0009088: threonine biosynthetic process3.18E-03
72GO:0009955: adaxial/abaxial pattern specification3.18E-03
73GO:0008272: sulfate transport3.75E-03
74GO:0009769: photosynthesis, light harvesting in photosystem II3.75E-03
75GO:0009645: response to low light intensity stimulus3.75E-03
76GO:0009610: response to symbiotic fungus3.75E-03
77GO:0009772: photosynthetic electron transport in photosystem II3.75E-03
78GO:0048437: floral organ development3.75E-03
79GO:0010196: nonphotochemical quenching3.75E-03
80GO:0016126: sterol biosynthetic process3.76E-03
81GO:0030091: protein repair4.35E-03
82GO:0042255: ribosome assembly4.35E-03
83GO:0052543: callose deposition in cell wall4.35E-03
84GO:0005978: glycogen biosynthetic process4.35E-03
85GO:0009642: response to light intensity4.35E-03
86GO:0009657: plastid organization4.98E-03
87GO:0032544: plastid translation4.98E-03
88GO:0006002: fructose 6-phosphate metabolic process4.98E-03
89GO:0006754: ATP biosynthetic process5.65E-03
90GO:0006098: pentose-phosphate shunt5.65E-03
91GO:0009821: alkaloid biosynthetic process5.65E-03
92GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process6.33E-03
93GO:0009086: methionine biosynthetic process6.33E-03
94GO:0034599: cellular response to oxidative stress6.50E-03
95GO:0009641: shade avoidance7.06E-03
96GO:0009089: lysine biosynthetic process via diaminopimelate7.80E-03
97GO:0015770: sucrose transport7.80E-03
98GO:0043085: positive regulation of catalytic activity7.80E-03
99GO:0006790: sulfur compound metabolic process8.58E-03
100GO:0030048: actin filament-based movement9.38E-03
101GO:0018107: peptidyl-threonine phosphorylation9.38E-03
102GO:0005986: sucrose biosynthetic process9.38E-03
103GO:0019253: reductive pentose-phosphate cycle1.02E-02
104GO:0007015: actin filament organization1.02E-02
105GO:0010223: secondary shoot formation1.02E-02
106GO:0009266: response to temperature stimulus1.02E-02
107GO:0006813: potassium ion transport1.08E-02
108GO:0005985: sucrose metabolic process1.11E-02
109GO:0046854: phosphatidylinositol phosphorylation1.11E-02
110GO:0009901: anther dehiscence1.11E-02
111GO:0080147: root hair cell development1.29E-02
112GO:0003333: amino acid transmembrane transport1.47E-02
113GO:0051260: protein homooligomerization1.47E-02
114GO:0061077: chaperone-mediated protein folding1.47E-02
115GO:0009269: response to desiccation1.47E-02
116GO:0045454: cell redox homeostasis1.48E-02
117GO:0009553: embryo sac development1.50E-02
118GO:0016226: iron-sulfur cluster assembly1.57E-02
119GO:0030433: ubiquitin-dependent ERAD pathway1.57E-02
120GO:0019748: secondary metabolic process1.57E-02
121GO:0009409: response to cold1.65E-02
122GO:0032259: methylation1.82E-02
123GO:0000413: protein peptidyl-prolyl isomerization1.99E-02
124GO:0009058: biosynthetic process2.04E-02
125GO:0009741: response to brassinosteroid2.09E-02
126GO:0015986: ATP synthesis coupled proton transport2.21E-02
127GO:0009556: microsporogenesis2.32E-02
128GO:0009630: gravitropism2.55E-02
129GO:0006906: vesicle fusion3.42E-02
130GO:0018298: protein-chromophore linkage3.82E-02
131GO:0009813: flavonoid biosynthetic process3.96E-02
132GO:0010218: response to far red light4.10E-02
133GO:0009658: chloroplast organization4.13E-02
134GO:0035556: intracellular signal transduction4.20E-02
135GO:0009631: cold acclimation4.24E-02
136GO:0007568: aging4.24E-02
137GO:0006865: amino acid transport4.38E-02
138GO:0009637: response to blue light4.52E-02
139GO:0009853: photorespiration4.52E-02
RankGO TermAdjusted P value
1GO:0004567: beta-mannosidase activity0.00E+00
2GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
3GO:0080082: esculin beta-glucosidase activity0.00E+00
4GO:0046408: chlorophyll synthetase activity0.00E+00
5GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity0.00E+00
6GO:0047668: amygdalin beta-glucosidase activity0.00E+00
7GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
8GO:0080083: beta-gentiobiose beta-glucosidase activity0.00E+00
9GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity0.00E+00
10GO:0046422: violaxanthin de-epoxidase activity0.00E+00
11GO:0004134: 4-alpha-glucanotransferase activity2.46E-04
12GO:0004645: phosphorylase activity2.46E-04
13GO:0003977: UDP-N-acetylglucosamine diphosphorylase activity2.46E-04
14GO:0015168: glycerol transmembrane transporter activity2.46E-04
15GO:0045486: naringenin 3-dioxygenase activity2.46E-04
16GO:0035671: enone reductase activity2.46E-04
17GO:0052630: UDP-N-acetylgalactosamine diphosphorylase activity2.46E-04
18GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity2.46E-04
19GO:0080079: cellobiose glucosidase activity2.46E-04
20GO:1905201: gibberellin transmembrane transporter activity2.46E-04
21GO:0050521: alpha-glucan, water dikinase activity2.46E-04
22GO:0008184: glycogen phosphorylase activity2.46E-04
23GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity2.46E-04
24GO:0052833: inositol monophosphate 4-phosphatase activity5.44E-04
25GO:0004412: homoserine dehydrogenase activity5.44E-04
26GO:0008967: phosphoglycolate phosphatase activity5.44E-04
27GO:0019172: glyoxalase III activity5.44E-04
28GO:0004310: farnesyl-diphosphate farnesyltransferase activity5.44E-04
29GO:0000234: phosphoethanolamine N-methyltransferase activity5.44E-04
30GO:0015172: acidic amino acid transmembrane transporter activity5.44E-04
31GO:0042389: omega-3 fatty acid desaturase activity5.44E-04
32GO:0010297: heteropolysaccharide binding5.44E-04
33GO:0004617: phosphoglycerate dehydrogenase activity5.44E-04
34GO:0052832: inositol monophosphate 3-phosphatase activity5.44E-04
35GO:0033201: alpha-1,4-glucan synthase activity5.44E-04
36GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity5.44E-04
37GO:0008934: inositol monophosphate 1-phosphatase activity5.44E-04
38GO:0018708: thiol S-methyltransferase activity5.44E-04
39GO:0003844: 1,4-alpha-glucan branching enzyme activity5.44E-04
40GO:0004751: ribose-5-phosphate isomerase activity8.83E-04
41GO:0016742: hydroxymethyl-, formyl- and related transferase activity8.83E-04
42GO:0008864: formyltetrahydrofolate deformylase activity8.83E-04
43GO:0010277: chlorophyllide a oxygenase [overall] activity8.83E-04
44GO:0043169: cation binding8.83E-04
45GO:0004373: glycogen (starch) synthase activity8.83E-04
46GO:0031409: pigment binding9.77E-04
47GO:0016851: magnesium chelatase activity1.26E-03
48GO:0022890: inorganic cation transmembrane transporter activity1.26E-03
49GO:0046715: borate transmembrane transporter activity1.26E-03
50GO:0004072: aspartate kinase activity1.26E-03
51GO:0019201: nucleotide kinase activity1.26E-03
52GO:0015175: neutral amino acid transmembrane transporter activity1.26E-03
53GO:0009011: starch synthase activity1.68E-03
54GO:0015204: urea transmembrane transporter activity1.68E-03
55GO:0003727: single-stranded RNA binding1.68E-03
56GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.68E-03
57GO:0047134: protein-disulfide reductase activity1.82E-03
58GO:0004791: thioredoxin-disulfide reductase activity2.27E-03
59GO:0004462: lactoylglutathione lyase activity2.65E-03
60GO:0008200: ion channel inhibitor activity2.65E-03
61GO:2001070: starch binding2.65E-03
62GO:0004332: fructose-bisphosphate aldolase activity2.65E-03
63GO:0004629: phospholipase C activity2.65E-03
64GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.97E-03
65GO:0004017: adenylate kinase activity3.18E-03
66GO:0004602: glutathione peroxidase activity3.18E-03
67GO:0004435: phosphatidylinositol phospholipase C activity3.18E-03
68GO:0033743: peptide-methionine (R)-S-oxide reductase activity3.18E-03
69GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.18E-03
70GO:0019843: rRNA binding3.40E-03
71GO:0016597: amino acid binding3.55E-03
72GO:0016168: chlorophyll binding3.98E-03
73GO:0102483: scopolin beta-glucosidase activity4.43E-03
74GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water4.98E-03
75GO:0008271: secondary active sulfate transmembrane transporter activity4.98E-03
76GO:0071949: FAD binding5.65E-03
77GO:0016844: strictosidine synthase activity6.33E-03
78GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity6.33E-03
79GO:0008422: beta-glucosidase activity6.78E-03
80GO:0030234: enzyme regulator activity7.06E-03
81GO:0008047: enzyme activator activity7.06E-03
82GO:0008515: sucrose transmembrane transporter activity7.80E-03
83GO:0047372: acylglycerol lipase activity7.80E-03
84GO:0015386: potassium:proton antiporter activity7.80E-03
85GO:0015116: sulfate transmembrane transporter activity8.58E-03
86GO:0015293: symporter activity9.01E-03
87GO:0003755: peptidyl-prolyl cis-trans isomerase activity9.36E-03
88GO:0004022: alcohol dehydrogenase (NAD) activity9.38E-03
89GO:0031072: heat shock protein binding9.38E-03
90GO:0003725: double-stranded RNA binding9.38E-03
91GO:0004535: poly(A)-specific ribonuclease activity1.02E-02
92GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.02E-02
93GO:0003774: motor activity1.02E-02
94GO:0051119: sugar transmembrane transporter activity1.11E-02
95GO:0051536: iron-sulfur cluster binding1.29E-02
96GO:0031418: L-ascorbic acid binding1.29E-02
97GO:0004857: enzyme inhibitor activity1.29E-02
98GO:0005528: FK506 binding1.29E-02
99GO:0015079: potassium ion transmembrane transporter activity1.38E-02
100GO:0016779: nucleotidyltransferase activity1.57E-02
101GO:0016491: oxidoreductase activity1.57E-02
102GO:0015035: protein disulfide oxidoreductase activity1.59E-02
103GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.66E-02
104GO:0030570: pectate lyase activity1.67E-02
105GO:0003756: protein disulfide isomerase activity1.77E-02
106GO:0004672: protein kinase activity1.90E-02
107GO:0005249: voltage-gated potassium channel activity1.99E-02
108GO:0046933: proton-transporting ATP synthase activity, rotational mechanism2.09E-02
109GO:0004252: serine-type endopeptidase activity2.15E-02
110GO:0015299: solute:proton antiporter activity2.21E-02
111GO:0048038: quinone binding2.43E-02
112GO:0015250: water channel activity3.16E-02
113GO:0008236: serine-type peptidase activity3.69E-02
114GO:0008168: methyltransferase activity3.98E-02
115GO:0004222: metalloendopeptidase activity4.10E-02
116GO:0003746: translation elongation factor activity4.52E-02
117GO:0003993: acid phosphatase activity4.66E-02
118GO:0000149: SNARE binding4.81E-02
119GO:0050661: NADP binding4.96E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast7.14E-28
2GO:0009534: chloroplast thylakoid7.35E-23
3GO:0009535: chloroplast thylakoid membrane1.21E-16
4GO:0009570: chloroplast stroma4.87E-11
5GO:0009941: chloroplast envelope1.49E-10
6GO:0031977: thylakoid lumen3.40E-07
7GO:0009579: thylakoid7.46E-07
8GO:0009543: chloroplast thylakoid lumen6.39E-06
9GO:0042651: thylakoid membrane8.32E-05
10GO:0031969: chloroplast membrane8.79E-05
11GO:0009501: amyloplast2.25E-04
12GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.36E-04
13GO:0010287: plastoglobule5.32E-04
14GO:0030076: light-harvesting complex8.79E-04
15GO:0010007: magnesium chelatase complex8.83E-04
16GO:0008076: voltage-gated potassium channel complex1.26E-03
17GO:0009544: chloroplast ATP synthase complex1.68E-03
18GO:0009517: PSII associated light-harvesting complex II1.68E-03
19GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)2.65E-03
20GO:0009840: chloroplastic endopeptidase Clp complex3.18E-03
21GO:0010319: stromule3.35E-03
22GO:0031982: vesicle4.35E-03
23GO:0031901: early endosome membrane5.65E-03
24GO:0005763: mitochondrial small ribosomal subunit5.65E-03
25GO:0016459: myosin complex7.06E-03
26GO:0032040: small-subunit processome8.58E-03
27GO:0009508: plastid chromosome9.38E-03
28GO:0030095: chloroplast photosystem II1.02E-02
29GO:0009654: photosystem II oxygen evolving complex1.38E-02
30GO:0009532: plastid stroma1.47E-02
31GO:0015935: small ribosomal subunit1.47E-02
32GO:0005623: cell1.99E-02
33GO:0009522: photosystem I2.21E-02
34GO:0009523: photosystem II2.32E-02
35GO:0019898: extrinsic component of membrane2.32E-02
36GO:0005887: integral component of plasma membrane2.82E-02
37GO:0009295: nucleoid2.91E-02
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Gene type



Gene DE type