co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G04900

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
2	GO:0006412: translation	2.08E-09
3	GO:0042254: ribosome biogenesis	6.09E-07
4	GO:0032544: plastid translation	1.24E-05
5	GO:0000023: maltose metabolic process	3.25E-05
6	GO:0005983: starch catabolic process	3.36E-05
7	GO:0009629: response to gravity	8.18E-05
8	GO:0007154: cell communication	8.18E-05
9	GO:0018026: peptidyl-lysine monomethylation	8.18E-05
10	GO:0031648: protein destabilization	8.18E-05
11	GO:0030388: fructose 1,6-bisphosphate metabolic process	8.18E-05
12	GO:0006000: fructose metabolic process	1.42E-04
13	GO:0010027: thylakoid membrane organization	2.67E-04
14	GO:0010021: amylopectin biosynthetic process	2.85E-04
15	GO:0006808: regulation of nitrogen utilization	2.85E-04
16	GO:0000470: maturation of LSU-rRNA	4.48E-04
17	GO:0009955: adaxial/abaxial pattern specification	5.36E-04
18	GO:1901259: chloroplast rRNA processing	5.36E-04
19	GO:0006002: fructose 6-phosphate metabolic process	8.20E-04
20	GO:0051865: protein autoubiquitination	9.20E-04
21	GO:0010205: photoinhibition	1.02E-03
22	GO:0009073: aromatic amino acid family biosynthetic process	1.24E-03
23	GO:0009750: response to fructose	1.24E-03
24	GO:0006415: translational termination	1.24E-03
25	GO:0006094: gluconeogenesis	1.47E-03
26	GO:0005986: sucrose biosynthetic process	1.47E-03
27	GO:0010020: chloroplast fission	1.60E-03
28	GO:0006636: unsaturated fatty acid biosynthetic process	1.85E-03
29	GO:0000027: ribosomal large subunit assembly	1.99E-03
30	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.40E-03
31	GO:0006284: base-excision repair	2.69E-03
32	GO:0009658: chloroplast organization	2.72E-03
33	GO:0055114: oxidation-reduction process	3.25E-03
34	GO:0019252: starch biosynthetic process	3.47E-03
35	GO:0000302: response to reactive oxygen species	3.63E-03
36	GO:0009409: response to cold	4.43E-03
37	GO:0015995: chlorophyll biosynthetic process	5.22E-03
38	GO:0016311: dephosphorylation	5.41E-03
39	GO:0034599: cellular response to oxidative stress	6.80E-03
40	GO:0009735: response to cytokinin	8.00E-03
41	GO:0009624: response to nematode	1.24E-02
42	GO:0042744: hydrogen peroxide catabolic process	1.60E-02
43	GO:0009790: embryo development	1.62E-02
44	GO:0006633: fatty acid biosynthetic process	1.71E-02
45	GO:0040008: regulation of growth	1.77E-02
46	GO:0006979: response to oxidative stress	1.79E-02
47	GO:0005975: carbohydrate metabolic process	2.70E-02
48	GO:0015979: photosynthesis	3.20E-02
49	GO:0006281: DNA repair	3.84E-02
50	GO:0009793: embryo development ending in seed dormancy	4.11E-02

Rank	GO Term	Adjusted P value
1	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
2	GO:0005363: maltose transmembrane transporter activity	0.00E+00
3	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
4	GO:0019843: rRNA binding	1.76E-15
5	GO:0003735: structural constituent of ribosome	1.29E-11
6	GO:0004856: xylulokinase activity	3.25E-05
7	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.25E-05
8	GO:0045485: omega-6 fatty acid desaturase activity	3.25E-05
9	GO:0033201: alpha-1,4-glucan synthase activity	8.18E-05
10	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	8.18E-05
11	GO:0008967: phosphoglycolate phosphatase activity	8.18E-05
12	GO:0004373: glycogen (starch) synthase activity	1.42E-04
13	GO:0017150: tRNA dihydrouridine synthase activity	1.42E-04
14	GO:0016149: translation release factor activity, codon specific	2.11E-04
15	GO:0009011: starch synthase activity	2.85E-04
16	GO:0016279: protein-lysine N-methyltransferase activity	2.85E-04
17	GO:0008725: DNA-3-methyladenine glycosylase activity	3.65E-04
18	GO:0016773: phosphotransferase activity, alcohol group as acceptor	3.65E-04
19	GO:0004130: cytochrome-c peroxidase activity	4.48E-04
20	GO:0004033: aldo-keto reductase (NADP) activity	7.22E-04
21	GO:0016491: oxidoreductase activity	7.52E-04
22	GO:0003747: translation release factor activity	9.20E-04
23	GO:0050662: coenzyme binding	3.31E-03
24	GO:0008237: metallopeptidase activity	4.32E-03
25	GO:0004222: metalloendopeptidase activity	5.99E-03
26	GO:0043621: protein self-association	8.31E-03
27	GO:0003723: RNA binding	1.10E-02
28	GO:0000287: magnesium ion binding	2.46E-02
29	GO:0004601: peroxidase activity	2.50E-02
30	GO:0016788: hydrolase activity, acting on ester bonds	2.53E-02
31	GO:0050660: flavin adenine dinucleotide binding	2.77E-02
32	GO:0042803: protein homodimerization activity	3.42E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	2.64E-33
2	GO:0009941: chloroplast envelope	9.02E-23
3	GO:0009570: chloroplast stroma	2.05E-15
4	GO:0005840: ribosome	1.42E-11
5	GO:0009534: chloroplast thylakoid	3.49E-11
6	GO:0009535: chloroplast thylakoid membrane	5.92E-10
7	GO:0009706: chloroplast inner membrane	4.03E-08
8	GO:0009579: thylakoid	9.49E-07
9	GO:0010287: plastoglobule	9.09E-05
10	GO:0022625: cytosolic large ribosomal subunit	4.01E-04
11	GO:0015934: large ribosomal subunit	4.03E-04
12	GO:0031977: thylakoid lumen	5.22E-04
13	GO:0009501: amyloplast	7.22E-04
14	GO:0005763: mitochondrial small ribosomal subunit	9.20E-04
15	GO:0009543: chloroplast thylakoid lumen	1.30E-03
16	GO:0009508: plastid chromosome	1.47E-03
17	GO:0015935: small ribosomal subunit	2.26E-03
18	GO:0031969: chloroplast membrane	3.36E-03
19	GO:0016020: membrane	3.76E-03
20	GO:0009536: plastid	3.91E-03
21	GO:0009295: nucleoid	4.32E-03
22	GO:0022626: cytosolic ribosome	8.37E-03