Gene: AT4G39890
     

Gene description


TAIR ID: AT4G39890

Short description: RAB GTPase homolog H1C

Pathogen responsiveness: 1.10

General responsiveness: -0.70

Orthologous


Rice: No orthologous gene
Maize: No orthologous gene
Wheat: No orthologous gene

GO biological process


intra-Golgi vesicle-mediated transport, retrograde transport, endosome to Golgi, protein transport, retrograde vesicle-mediated transport, Golgi to ER


GO cellular component


Golgi apparatus, Golgi membrane, cytosol


GO molecular function


GTP binding, GTPase activity


Protein domain


PfamPF00071, Ras family
SMARTSM00174, RHO
SMARTSM00176, RAN
SMARTSM00173, RAS
SMARTSM00175, RAB

Metabolic pathway


Not involved in metabolic pathway


KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT4G36990

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 20 (Top10%)

click to view PPI network

Differentially expressed condition


43 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE11807Col, ERF104 ox, water 4 hCol, ERF104 ox, Flg22 4 h2.201.20E-02
GSE12856Col, WT, controlCol, WT, Bg h2.015.51E-07
GSE12856Col, ataf1, controlCol, ataf1, Bg h2.417.69E-08
GSE17464Laer, JA+Flg22 0 hLaer, JA+Flg22 1 h2.511.70E-04
GSE17464Laer, controlLaer, Flg22 1 h3.641.73E-08
GSE17464Laer, controlLaer, Flg22 2 h2.113.04E-04
GSE17464Penta, controlPenta, Flg22 2 h3.522.75E-08
GSE17464Penta, controlPenta, Flg22 2 h2.241.27E-04
GSE17500Col, WT, control 0 hCol, WT, PstDC3000 24 h2.121.16E-05
GSE17500Col, miR393, control 0 hCol, miR393, PstDC3000 24 h1.532.58E-04
GSE18329Col, wrky72_1, controlCol, wrky72_1, Hpa noco2 96 h1.611.18E-09
GSE18978Col, WT, control 24 hCol, WT, PsmES4326 24 h1.881.84E-07
GSE2169Col, rre2, waterCol, rre2, chitin 30 min1.642.18E-07
GSE21920Col, WT, mockCol, WT, Pto HopZ1a 6 h1.512.19E-05
GSE2538Col, WT, controlCol, WT, crab shell chitin 30 min2.151.11E-06
GSE2538Col, WT, controlCol, WT, purified chitin octamer 30 min1.962.47E-06
GSE37269Ler0, WT, controlLer0, WT, TEV 21 d1.704.92E-03
GSE40544Col, WT, controlCol, WT, PstDC3000 AvrRpt21.561.87E-05
GSE40544Col, WT, controlCol, WT, PstDC3000 EV2.253.34E-07
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 12 h2.879.25E-14
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 4 h2.415.65E-12
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 8 h3.203.52E-14
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 12 h2.623.65E-13
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h3.391.38E-14
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 8 h2.851.00E-13
GSE45214Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 4 h3.158.13E-14
GSE45214Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h2.953.17E-13
GSE45214Col, med16, PstDC3000 AvrRpt2 0 hCol, med16, PstDC3000 AvrRpt2 4 h3.852.18E-15
GSE45214Col, npr1, PstDC3000 AvrRpt2 0 hCol, npr1, PstDC3000 AvrRpt2 4 h3.061.70E-13
GSE4746Col, WT, water 30 minCol, WT, chitooctaose 30 min1.782.60E-04
GSE52979Col, WT, acetoneCol, WT, acetone flg22_2 h2.631.62E-09
GSE52979Col, WT, oxo_C14_HSLCol, WT, oxo_C14_HSL flg22_2 h2.777.34E-10
GSE5520Col, WT, control 10 hCol, WT, Cor- 10 h1.742.37E-02
GSE5615Col, WT, GST 4 hCol, WT, GST+NPP1 4 h1.554.74E-05
GSE5615Col, WT, water 1 hCol, WT, Flg22 1 h1.791.24E-05
GSE5615Col, WT, water 1 hCol, WT, HrpZ 1 h1.866.43E-06
GSE5615Col, WT, water 4 hCol, WT, HrpZ 4 h2.699.36E-10
GSE58954Col, WT, Psm AvrRpt2 0 hCol, WT, Psm AvrRpt2 6 h2.709.01E-04
GSE8319Col, WT, controlCol, WT, chitooctaose 30 min1.521.54E-10
GSE9674Ws-4, AtMYB30 ox, controlWs-4, AtMYB30 ox, Xanthomonas strain Xcc147 2-4 h1.944.37E-04
GSE9674Ws-4, AtMYB30 ox, controlWs-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h2.323.42E-04
GSE9674Ws-4, WT, controlWs-4, WT, Xanthomonas strain Xcc147 2-4 h1.621.92E-03
GSE9674Ws-4, WT, controlWs-4, WT, Xanthomonas strain Xcc147 6 h2.641.69E-04






Copyright © 2017 Ziding Zhang's Lab - China Agricultural University. All Rights Reserved.