Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G39890

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0035024: negative regulation of Rho protein signal transduction0.00E+00
2GO:0032953: regulation of (1->3)-beta-D-glucan biosynthetic process0.00E+00
3GO:0071289: cellular response to nickel ion0.00E+00
4GO:0034775: glutathione transmembrane transport0.00E+00
5GO:0050708: regulation of protein secretion0.00E+00
6GO:0010200: response to chitin1.45E-07
7GO:0042344: indole glucosinolate catabolic process1.95E-06
8GO:0006751: glutathione catabolic process2.21E-05
9GO:0006955: immune response4.27E-05
10GO:0050691: regulation of defense response to virus by host9.88E-05
11GO:0046938: phytochelatin biosynthetic process9.88E-05
12GO:0051180: vitamin transport9.88E-05
13GO:0030974: thiamine pyrophosphate transport9.88E-05
14GO:1902478: negative regulation of defense response to bacterium, incompatible interaction9.88E-05
15GO:0009865: pollen tube adhesion9.88E-05
16GO:0052544: defense response by callose deposition in cell wall1.48E-04
17GO:0006470: protein dephosphorylation1.54E-04
18GO:0010507: negative regulation of autophagy2.32E-04
19GO:0015893: drug transport2.32E-04
20GO:0052542: defense response by callose deposition2.32E-04
21GO:0009611: response to wounding3.05E-04
22GO:0090630: activation of GTPase activity3.86E-04
23GO:0009961: response to 1-aminocyclopropane-1-carboxylic acid3.86E-04
24GO:0046786: viral replication complex formation and maintenance3.86E-04
25GO:0015700: arsenite transport5.54E-04
26GO:0033014: tetrapyrrole biosynthetic process5.54E-04
27GO:0045088: regulation of innate immune response7.37E-04
28GO:0034440: lipid oxidation7.37E-04
29GO:0009117: nucleotide metabolic process1.14E-03
30GO:0010337: regulation of salicylic acid metabolic process1.14E-03
31GO:0009617: response to bacterium1.28E-03
32GO:0048280: vesicle fusion with Golgi apparatus1.36E-03
33GO:0080086: stamen filament development1.36E-03
34GO:0006468: protein phosphorylation1.41E-03
35GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway1.59E-03
36GO:0010161: red light signaling pathway1.59E-03
37GO:0006783: heme biosynthetic process2.37E-03
38GO:0046685: response to arsenic-containing substance2.37E-03
39GO:0006779: porphyrin-containing compound biosynthetic process2.65E-03
40GO:2000280: regulation of root development2.65E-03
41GO:0007346: regulation of mitotic cell cycle2.65E-03
42GO:0006896: Golgi to vacuole transport2.95E-03
43GO:0006782: protoporphyrinogen IX biosynthetic process2.95E-03
44GO:0048229: gametophyte development3.25E-03
45GO:0009682: induced systemic resistance3.25E-03
46GO:0010105: negative regulation of ethylene-activated signaling pathway3.57E-03
47GO:0009751: response to salicylic acid3.73E-03
48GO:0009737: response to abscisic acid3.88E-03
49GO:0018107: peptidyl-threonine phosphorylation3.89E-03
50GO:0055046: microgametogenesis3.89E-03
51GO:0002237: response to molecule of bacterial origin4.22E-03
52GO:0009901: anther dehiscence4.57E-03
53GO:0009695: jasmonic acid biosynthetic process5.65E-03
54GO:0031408: oxylipin biosynthetic process6.03E-03
55GO:0051321: meiotic cell cycle6.03E-03
56GO:0016226: iron-sulfur cluster assembly6.42E-03
57GO:0006952: defense response6.66E-03
58GO:0040007: growth6.82E-03
59GO:0010584: pollen exine formation7.23E-03
60GO:0042147: retrograde transport, endosome to Golgi7.64E-03
61GO:0009555: pollen development7.86E-03
62GO:0048653: anther development8.07E-03
63GO:0035556: intracellular signal transduction8.42E-03
64GO:0048868: pollen tube development8.50E-03
65GO:0010468: regulation of gene expression8.86E-03
66GO:0006623: protein targeting to vacuole9.39E-03
67GO:0006891: intra-Golgi vesicle-mediated transport9.85E-03
68GO:0010193: response to ozone9.85E-03
69GO:0019760: glucosinolate metabolic process1.13E-02
70GO:0006904: vesicle docking involved in exocytosis1.18E-02
71GO:0006970: response to osmotic stress1.24E-02
72GO:0007165: signal transduction1.38E-02
73GO:0006950: response to stress1.43E-02
74GO:0015995: chlorophyll biosynthetic process1.43E-02
75GO:0006888: ER to Golgi vesicle-mediated transport1.43E-02
76GO:0008219: cell death1.54E-02
77GO:0009817: defense response to fungus, incompatible interaction1.54E-02
78GO:0045892: negative regulation of transcription, DNA-templated1.74E-02
79GO:0045087: innate immune response1.82E-02
80GO:0042742: defense response to bacterium1.92E-02
81GO:0006979: response to oxidative stress1.94E-02
82GO:0006839: mitochondrial transport2.00E-02
83GO:0006887: exocytosis2.06E-02
84GO:0006631: fatty acid metabolic process2.06E-02
85GO:0009640: photomorphogenesis2.18E-02
86GO:0009753: response to jasmonic acid2.27E-02
87GO:0000165: MAPK cascade2.50E-02
88GO:0031347: regulation of defense response2.50E-02
89GO:0009846: pollen germination2.57E-02
90GO:0042538: hyperosmotic salinity response2.57E-02
91GO:0010224: response to UV-B2.77E-02
92GO:0009651: response to salt stress2.81E-02
93GO:0006810: transport3.11E-02
94GO:0009626: plant-type hypersensitive response3.18E-02
95GO:0018105: peptidyl-serine phosphorylation3.54E-02
96GO:0000398: mRNA splicing, via spliceosome3.84E-02
97GO:0045893: positive regulation of transcription, DNA-templated4.29E-02
RankGO TermAdjusted P value
1GO:0017048: Rho GTPase binding0.00E+00
2GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity8.38E-09
3GO:0036374: glutathione hydrolase activity1.95E-06
4GO:0003840: gamma-glutamyltransferase activity1.95E-06
5GO:0090422: thiamine pyrophosphate transporter activity9.88E-05
6GO:0046870: cadmium ion binding9.88E-05
7GO:0015446: ATPase-coupled arsenite transmembrane transporter activity9.88E-05
8GO:0071992: phytochelatin transmembrane transporter activity9.88E-05
9GO:0004385: guanylate kinase activity2.32E-04
10GO:0017022: myosin binding2.32E-04
11GO:0004103: choline kinase activity2.32E-04
12GO:0008883: glutamyl-tRNA reductase activity2.32E-04
13GO:0004383: guanylate cyclase activity3.86E-04
14GO:0016165: linoleate 13S-lipoxygenase activity3.86E-04
15GO:0004722: protein serine/threonine phosphatase activity5.53E-04
16GO:0001653: peptide receptor activity5.54E-04
17GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity9.73E-04
18GO:0019137: thioglucosidase activity1.14E-03
19GO:0016301: kinase activity1.22E-03
20GO:0004721: phosphoprotein phosphatase activity1.27E-03
21GO:0008143: poly(A) binding1.59E-03
22GO:0005524: ATP binding4.76E-03
23GO:0004707: MAP kinase activity6.03E-03
24GO:0004672: protein kinase activity8.15E-03
25GO:0102483: scopolin beta-glucosidase activity1.43E-02
26GO:0030247: polysaccharide binding1.43E-02
27GO:0005096: GTPase activator activity1.60E-02
28GO:0004693: cyclin-dependent protein serine/threonine kinase activity1.65E-02
29GO:0004674: protein serine/threonine kinase activity1.66E-02
30GO:0043565: sequence-specific DNA binding1.77E-02
31GO:0044212: transcription regulatory region DNA binding1.92E-02
32GO:0000149: SNARE binding1.94E-02
33GO:0004712: protein serine/threonine/tyrosine kinase activity1.94E-02
34GO:0008422: beta-glucosidase activity1.94E-02
35GO:0050661: NADP binding2.00E-02
36GO:0005484: SNAP receptor activity2.18E-02
37GO:0046872: metal ion binding2.30E-02
38GO:0051537: 2 iron, 2 sulfur cluster binding2.31E-02
39GO:0035091: phosphatidylinositol binding2.31E-02
40GO:0016298: lipase activity2.77E-02
41GO:0008234: cysteine-type peptidase activity2.90E-02
RankGO TermAdjusted P value
1GO:0070382: exocytic vesicle9.88E-05
2GO:0030133: transport vesicle2.32E-04
3GO:0070062: extracellular exosome5.54E-04
4GO:0045177: apical part of cell5.54E-04
5GO:0005801: cis-Golgi network1.36E-03
6GO:0012507: ER to Golgi transport vesicle membrane1.84E-03
7GO:0010494: cytoplasmic stress granule2.37E-03
8GO:0016604: nuclear body2.65E-03
9GO:0005938: cell cortex3.89E-03
10GO:0005758: mitochondrial intermembrane space5.28E-03
11GO:0000145: exocyst1.03E-02
12GO:0031201: SNARE complex2.06E-02
13GO:0031902: late endosome membrane2.06E-02
14GO:0090406: pollen tube2.18E-02
15GO:0009505: plant-type cell wall2.55E-02
16GO:0005635: nuclear envelope2.83E-02
17GO:0005681: spliceosomal complex3.04E-02
18GO:0016607: nuclear speck3.11E-02
19GO:0005654: nucleoplasm3.99E-02
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Gene type



Gene DE type