co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G39890

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
2	GO:0010398: xylogalacturonan metabolic process	0.00E+00
3	GO:0033542: fatty acid beta-oxidation, unsaturated, even number	0.00E+00
4	GO:0071327: cellular response to trehalose stimulus	0.00E+00
5	GO:0032260: response to jasmonic acid stimulus involved in jasmonic acid and ethylene-dependent systemic resistance	0.00E+00
6	GO:0042891: antibiotic transport	0.00E+00
7	GO:0045792: negative regulation of cell size	0.00E+00
8	GO:1900367: positive regulation of defense response to insect	0.00E+00
9	GO:0002376: immune system process	0.00E+00
10	GO:0006983: ER overload response	0.00E+00
11	GO:0009617: response to bacterium	2.36E-09
12	GO:0009816: defense response to bacterium, incompatible interaction	2.16E-08
13	GO:0051707: response to other organism	2.12E-07
14	GO:0010200: response to chitin	3.81E-07
15	GO:0010150: leaf senescence	5.05E-07
16	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	2.06E-06
17	GO:0031349: positive regulation of defense response	2.06E-06
18	GO:0009625: response to insect	2.97E-06
19	GO:0006952: defense response	6.73E-06
20	GO:0009627: systemic acquired resistance	2.60E-05
21	GO:0080142: regulation of salicylic acid biosynthetic process	3.17E-05
22	GO:0000162: tryptophan biosynthetic process	4.24E-05
23	GO:0009759: indole glucosinolate biosynthetic process	7.50E-05
24	GO:0010942: positive regulation of cell death	7.50E-05
25	GO:0009636: response to toxic substance	1.12E-04
26	GO:0042742: defense response to bacterium	1.14E-04
27	GO:0006979: response to oxidative stress	1.17E-04
28	GO:0010044: response to aluminum ion	1.37E-04
29	GO:0009819: drought recovery	1.76E-04
30	GO:0060862: negative regulation of floral organ abscission	2.09E-04
31	GO:0010266: response to vitamin B1	2.09E-04
32	GO:0006805: xenobiotic metabolic process	2.09E-04
33	GO:0009609: response to symbiotic bacterium	2.09E-04
34	GO:0009700: indole phytoalexin biosynthetic process	2.09E-04
35	GO:1901183: positive regulation of camalexin biosynthetic process	2.09E-04
36	GO:0010230: alternative respiration	2.09E-04
37	GO:0006643: membrane lipid metabolic process	2.09E-04
38	GO:0043562: cellular response to nitrogen levels	2.19E-04
39	GO:2000031: regulation of salicylic acid mediated signaling pathway	2.19E-04
40	GO:0009626: plant-type hypersensitive response	2.29E-04
41	GO:0010112: regulation of systemic acquired resistance	2.65E-04
42	GO:0043069: negative regulation of programmed cell death	3.71E-04
43	GO:0009682: induced systemic resistance	4.29E-04
44	GO:0052544: defense response by callose deposition in cell wall	4.29E-04
45	GO:0019441: tryptophan catabolic process to kynurenine	4.66E-04
46	GO:0010618: aerenchyma formation	4.66E-04
47	GO:0006212: uracil catabolic process	4.66E-04
48	GO:0043066: negative regulation of apoptotic process	4.66E-04
49	GO:0019483: beta-alanine biosynthetic process	4.66E-04
50	GO:0010541: acropetal auxin transport	4.66E-04
51	GO:0009414: response to water deprivation	4.71E-04
52	GO:0009407: toxin catabolic process	5.13E-04
53	GO:0009751: response to salicylic acid	6.73E-04
54	GO:0009969: xyloglucan biosynthetic process	7.02E-04
55	GO:0048281: inflorescence morphogenesis	7.59E-04
56	GO:1900140: regulation of seedling development	7.59E-04
57	GO:0061158: 3'-UTR-mediated mRNA destabilization	7.59E-04
58	GO:0055074: calcium ion homeostasis	7.59E-04
59	GO:0009651: response to salt stress	8.26E-04
60	GO:0000187: activation of MAPK activity	1.08E-03
61	GO:0048194: Golgi vesicle budding	1.08E-03
62	GO:0043207: response to external biotic stimulus	1.08E-03
63	GO:0009399: nitrogen fixation	1.08E-03
64	GO:0071456: cellular response to hypoxia	1.13E-03
65	GO:0009814: defense response, incompatible interaction	1.13E-03
66	GO:0046686: response to cadmium ion	1.31E-03
67	GO:0006542: glutamine biosynthetic process	1.44E-03
68	GO:0080037: negative regulation of cytokinin-activated signaling pathway	1.44E-03
69	GO:0060548: negative regulation of cell death	1.44E-03
70	GO:0048830: adventitious root development	1.44E-03
71	GO:1902584: positive regulation of response to water deprivation	1.44E-03
72	GO:0010600: regulation of auxin biosynthetic process	1.44E-03
73	GO:0010188: response to microbial phytotoxin	1.44E-03
74	GO:0009723: response to ethylene	1.58E-03
75	GO:0010225: response to UV-C	1.83E-03
76	GO:0030308: negative regulation of cell growth	1.83E-03
77	GO:0009697: salicylic acid biosynthetic process	1.83E-03
78	GO:0006090: pyruvate metabolic process	1.83E-03
79	GO:2000762: regulation of phenylpropanoid metabolic process	1.83E-03
80	GO:0046283: anthocyanin-containing compound metabolic process	1.83E-03
81	GO:0016192: vesicle-mediated transport	1.90E-03
82	GO:0000302: response to reactive oxygen species	2.07E-03
83	GO:0006751: glutathione catabolic process	2.26E-03
84	GO:0060918: auxin transport	2.26E-03
85	GO:1900425: negative regulation of defense response to bacterium	2.26E-03
86	GO:0002238: response to molecule of fungal origin	2.26E-03
87	GO:0006014: D-ribose metabolic process	2.26E-03
88	GO:0009737: response to abscisic acid	2.61E-03
89	GO:0010310: regulation of hydrogen peroxide metabolic process	2.71E-03
90	GO:0000911: cytokinesis by cell plate formation	2.71E-03
91	GO:0009612: response to mechanical stimulus	2.71E-03
92	GO:0006468: protein phosphorylation	2.76E-03
93	GO:0051607: defense response to virus	2.82E-03
94	GO:0016042: lipid catabolic process	3.05E-03
95	GO:0009610: response to symbiotic fungus	3.20E-03
96	GO:0046470: phosphatidylcholine metabolic process	3.20E-03
97	GO:0043090: amino acid import	3.20E-03
98	GO:0071446: cellular response to salicylic acid stimulus	3.20E-03
99	GO:0009787: regulation of abscisic acid-activated signaling pathway	3.71E-03
100	GO:0043068: positive regulation of programmed cell death	3.71E-03
101	GO:0030162: regulation of proteolysis	3.71E-03
102	GO:1900150: regulation of defense response to fungus	3.71E-03
103	GO:0009832: plant-type cell wall biogenesis	4.08E-03
104	GO:0030968: endoplasmic reticulum unfolded protein response	4.24E-03
105	GO:0006075: (1->3)-beta-D-glucan biosynthetic process	4.24E-03
106	GO:0010120: camalexin biosynthetic process	4.24E-03
107	GO:0010497: plasmodesmata-mediated intercellular transport	4.24E-03
108	GO:0010204: defense response signaling pathway, resistance gene-independent	4.24E-03
109	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	4.38E-03
110	GO:0048527: lateral root development	4.48E-03
111	GO:0007166: cell surface receptor signaling pathway	4.50E-03
112	GO:0009051: pentose-phosphate shunt, oxidative branch	4.80E-03
113	GO:0051865: protein autoubiquitination	4.80E-03
114	GO:1900426: positive regulation of defense response to bacterium	5.38E-03
115	GO:2000280: regulation of root development	5.38E-03
116	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	5.38E-03
117	GO:0009641: shade avoidance	5.99E-03
118	GO:0010215: cellulose microfibril organization	5.99E-03
119	GO:0006995: cellular response to nitrogen starvation	5.99E-03
120	GO:0042542: response to hydrogen peroxide	6.08E-03
121	GO:0009684: indoleacetic acid biosynthetic process	6.62E-03
122	GO:0000038: very long-chain fatty acid metabolic process	6.62E-03
123	GO:0000266: mitochondrial fission	7.28E-03
124	GO:0012501: programmed cell death	7.28E-03
125	GO:0002213: defense response to insect	7.28E-03
126	GO:0010105: negative regulation of ethylene-activated signaling pathway	7.28E-03
127	GO:0031347: regulation of defense response	7.66E-03
128	GO:0006108: malate metabolic process	7.96E-03
129	GO:0006807: nitrogen compound metabolic process	7.96E-03
130	GO:0002237: response to molecule of bacterial origin	8.66E-03
131	GO:0007034: vacuolar transport	8.66E-03
132	GO:0070588: calcium ion transmembrane transport	9.37E-03
133	GO:0009833: plant-type primary cell wall biogenesis	1.01E-02
134	GO:2000377: regulation of reactive oxygen species metabolic process	1.09E-02
135	GO:0009409: response to cold	1.10E-02
136	GO:0016998: cell wall macromolecule catabolic process	1.25E-02
137	GO:0051260: protein homooligomerization	1.25E-02
138	GO:0009742: brassinosteroid mediated signaling pathway	1.29E-02
139	GO:0031348: negative regulation of defense response	1.33E-02
140	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.33E-02
141	GO:0006012: galactose metabolic process	1.41E-02
142	GO:0071215: cellular response to abscisic acid stimulus	1.41E-02
143	GO:0010584: pollen exine formation	1.50E-02
144	GO:0050832: defense response to fungus	1.53E-02
145	GO:0009753: response to jasmonic acid	1.56E-02
146	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.59E-02
147	GO:0006508: proteolysis	1.63E-02
148	GO:0000413: protein peptidyl-prolyl isomerization	1.68E-02
149	GO:0010051: xylem and phloem pattern formation	1.68E-02
150	GO:0042631: cellular response to water deprivation	1.68E-02
151	GO:0000271: polysaccharide biosynthetic process	1.68E-02
152	GO:0042391: regulation of membrane potential	1.68E-02
153	GO:0010197: polar nucleus fusion	1.77E-02
154	GO:0008360: regulation of cell shape	1.77E-02
155	GO:0006885: regulation of pH	1.77E-02
156	GO:0045489: pectin biosynthetic process	1.77E-02
157	GO:0006662: glycerol ether metabolic process	1.77E-02
158	GO:0061025: membrane fusion	1.86E-02
159	GO:0009646: response to absence of light	1.86E-02
160	GO:0048544: recognition of pollen	1.86E-02
161	GO:0019252: starch biosynthetic process	1.96E-02
162	GO:0009851: auxin biosynthetic process	1.96E-02
163	GO:0010193: response to ozone	2.06E-02
164	GO:0016032: viral process	2.15E-02
165	GO:0019761: glucosinolate biosynthetic process	2.15E-02
166	GO:0071555: cell wall organization	2.20E-02
167	GO:0030163: protein catabolic process	2.25E-02
168	GO:0007165: signal transduction	2.29E-02
169	GO:0006470: protein dephosphorylation	2.42E-02
170	GO:0006904: vesicle docking involved in exocytosis	2.46E-02
171	GO:0055114: oxidation-reduction process	2.60E-02
172	GO:0001666: response to hypoxia	2.67E-02
173	GO:0042128: nitrate assimilation	2.89E-02
174	GO:0016049: cell growth	3.11E-02
175	GO:0015031: protein transport	3.14E-02
176	GO:0009826: unidimensional cell growth	3.15E-02
177	GO:0008219: cell death	3.23E-02
178	GO:0009817: defense response to fungus, incompatible interaction	3.23E-02
179	GO:0030244: cellulose biosynthetic process	3.23E-02
180	GO:0010311: lateral root formation	3.34E-02
181	GO:0010119: regulation of stomatal movement	3.58E-02
182	GO:0009631: cold acclimation	3.58E-02
183	GO:0006865: amino acid transport	3.70E-02
184	GO:0016051: carbohydrate biosynthetic process	3.82E-02
185	GO:0034599: cellular response to oxidative stress	3.94E-02
186	GO:0080167: response to karrikin	4.04E-02
187	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.18E-02
188	GO:0006887: exocytosis	4.32E-02
189	GO:0044550: secondary metabolite biosynthetic process	4.39E-02
190	GO:0010114: response to red light	4.57E-02
191	GO:0045454: cell redox homeostasis	4.83E-02
192	GO:0006886: intracellular protein transport	4.97E-02
193	GO:0009965: leaf morphogenesis	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0016504: peptidase activator activity	0.00E+00
2	GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity	0.00E+00
3	GO:0015370: solute:sodium symporter activity	0.00E+00
4	GO:0003837: beta-ureidopropionase activity	0.00E+00
5	GO:0070577: lysine-acetylated histone binding	0.00E+00
6	GO:0010298: dihydrocamalexic acid decarboxylase activity	0.00E+00
7	GO:0004364: glutathione transferase activity	8.40E-05
8	GO:0004012: phospholipid-translocating ATPase activity	1.04E-04
9	GO:0008320: protein transmembrane transporter activity	1.37E-04
10	GO:0043295: glutathione binding	1.37E-04
11	GO:0004714: transmembrane receptor protein tyrosine kinase activity	1.76E-04
12	GO:0031127: alpha-(1,2)-fucosyltransferase activity	2.09E-04
13	GO:2001227: quercitrin binding	2.09E-04
14	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.09E-04
15	GO:0080023: 3R-hydroxyacyl-CoA dehydratase activity	2.09E-04
16	GO:2001147: camalexin binding	2.09E-04
17	GO:0004566: beta-glucuronidase activity	4.66E-04
18	GO:0047364: desulfoglucosinolate sulfotransferase activity	4.66E-04
19	GO:0004061: arylformamidase activity	4.66E-04
20	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	5.58E-04
21	GO:0004190: aspartic-type endopeptidase activity	7.02E-04
22	GO:0016595: glutamate binding	7.59E-04
23	GO:0004473: malate dehydrogenase (decarboxylating) (NADP+) activity	7.59E-04
24	GO:0004049: anthranilate synthase activity	7.59E-04
25	GO:0003840: gamma-glutamyltransferase activity	7.59E-04
26	GO:0036374: glutathione hydrolase activity	7.59E-04
27	GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity	1.08E-03
28	GO:0035529: NADH pyrophosphatase activity	1.08E-03
29	GO:0016298: lipase activity	1.27E-03
30	GO:0016652: oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor	1.44E-03
31	GO:0015204: urea transmembrane transporter activity	1.44E-03
32	GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity	1.44E-03
33	GO:0070628: proteasome binding	1.44E-03
34	GO:0004470: malic enzyme activity	1.44E-03
35	GO:0047631: ADP-ribose diphosphatase activity	1.83E-03
36	GO:0004356: glutamate-ammonia ligase activity	1.83E-03
37	GO:0008948: oxaloacetate decarboxylase activity	1.83E-03
38	GO:0005546: phosphatidylinositol-4,5-bisphosphate binding	1.83E-03
39	GO:0005496: steroid binding	1.83E-03
40	GO:0016301: kinase activity	1.95E-03
41	GO:0000210: NAD+ diphosphatase activity	2.26E-03
42	GO:0035252: UDP-xylosyltransferase activity	2.26E-03
43	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	2.61E-03
44	GO:0004747: ribokinase activity	2.71E-03
45	GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity	3.20E-03
46	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.47E-03
47	GO:0019825: oxygen binding	3.50E-03
48	GO:0004708: MAP kinase kinase activity	3.71E-03
49	GO:0004034: aldose 1-epimerase activity	3.71E-03
50	GO:0052747: sinapyl alcohol dehydrogenase activity	3.71E-03
51	GO:0008865: fructokinase activity	3.71E-03
52	GO:0005516: calmodulin binding	3.85E-03
53	GO:0003843: 1,3-beta-D-glucan synthase activity	4.24E-03
54	GO:0004630: phospholipase D activity	4.24E-03
55	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	4.24E-03
56	GO:0020037: heme binding	4.48E-03
57	GO:0008417: fucosyltransferase activity	4.80E-03
58	GO:0004713: protein tyrosine kinase activity	5.99E-03
59	GO:0005506: iron ion binding	6.30E-03
60	GO:0005543: phospholipid binding	6.62E-03
61	GO:0008794: arsenate reductase (glutaredoxin) activity	6.62E-03
62	GO:0015293: symporter activity	7.11E-03
63	GO:0045551: cinnamyl-alcohol dehydrogenase activity	7.28E-03
64	GO:0051287: NAD binding	7.66E-03
65	GO:0005262: calcium channel activity	7.96E-03
66	GO:0005388: calcium-transporting ATPase activity	7.96E-03
67	GO:0004022: alcohol dehydrogenase (NAD) activity	7.96E-03
68	GO:0061630: ubiquitin protein ligase activity	9.27E-03
69	GO:0030552: cAMP binding	9.37E-03
70	GO:0030553: cGMP binding	9.37E-03
71	GO:0008061: chitin binding	9.37E-03
72	GO:0008146: sulfotransferase activity	9.37E-03
73	GO:0031625: ubiquitin protein ligase binding	9.46E-03
74	GO:0003954: NADH dehydrogenase activity	1.09E-02
75	GO:0005216: ion channel activity	1.17E-02
76	GO:0030246: carbohydrate binding	1.19E-02
77	GO:0015035: protein disulfide oxidoreductase activity	1.25E-02
78	GO:0033612: receptor serine/threonine kinase binding	1.25E-02
79	GO:0005507: copper ion binding	1.30E-02
80	GO:0016760: cellulose synthase (UDP-forming) activity	1.41E-02
81	GO:0003727: single-stranded RNA binding	1.50E-02
82	GO:0004674: protein serine/threonine kinase activity	1.58E-02
83	GO:0047134: protein-disulfide reductase activity	1.59E-02
84	GO:0005451: monovalent cation:proton antiporter activity	1.68E-02
85	GO:0005249: voltage-gated potassium channel activity	1.68E-02
86	GO:0030551: cyclic nucleotide binding	1.68E-02
87	GO:0008080: N-acetyltransferase activity	1.77E-02
88	GO:0004791: thioredoxin-disulfide reductase activity	1.86E-02
89	GO:0016853: isomerase activity	1.86E-02
90	GO:0015299: solute:proton antiporter activity	1.86E-02
91	GO:0015385: sodium:proton antiporter activity	2.25E-02
92	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.25E-02
93	GO:0016759: cellulose synthase activity	2.36E-02
94	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	2.46E-02
95	GO:0005524: ATP binding	2.70E-02
96	GO:0004683: calmodulin-dependent protein kinase activity	3.00E-02
97	GO:0004806: triglyceride lipase activity	3.00E-02
98	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	3.11E-02
99	GO:0000287: magnesium ion binding	3.21E-02
100	GO:0016491: oxidoreductase activity	3.30E-02
101	GO:0004222: metalloendopeptidase activity	3.46E-02
102	GO:0004842: ubiquitin-protein transferase activity	3.54E-02
103	GO:0030145: manganese ion binding	3.58E-02
104	GO:0050897: cobalt ion binding	3.58E-02
105	GO:0004672: protein kinase activity	3.87E-02
106	GO:0000987: core promoter proximal region sequence-specific DNA binding	3.94E-02
107	GO:0004497: monooxygenase activity	4.04E-02
108	GO:0008422: beta-glucosidase activity	4.07E-02
109	GO:0043565: sequence-specific DNA binding	4.21E-02
110	GO:0052689: carboxylic ester hydrolase activity	4.46E-02
111	GO:0005484: SNAP receptor activity	4.57E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	6.07E-14
2	GO:0016021: integral component of membrane	1.29E-07
3	GO:0005789: endoplasmic reticulum membrane	8.62E-05
4	GO:0005618: cell wall	1.27E-04
5	GO:0005950: anthranilate synthase complex	4.66E-04
6	GO:0031304: intrinsic component of mitochondrial inner membrane	4.66E-04
7	GO:0005901: caveola	4.66E-04
8	GO:0030134: ER to Golgi transport vesicle	4.66E-04
9	GO:0005783: endoplasmic reticulum	7.92E-04
10	GO:0005829: cytosol	9.95E-04
11	GO:0070062: extracellular exosome	1.08E-03
12	GO:0005775: vacuolar lumen	1.08E-03
13	GO:0030658: transport vesicle membrane	1.08E-03
14	GO:0000164: protein phosphatase type 1 complex	1.83E-03
15	GO:0009504: cell plate	1.94E-03
16	GO:0032580: Golgi cisterna membrane	2.50E-03
17	GO:0005801: cis-Golgi network	2.71E-03
18	GO:0048046: apoplast	2.94E-03
19	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	3.20E-03
20	GO:0000148: 1,3-beta-D-glucan synthase complex	4.24E-03
21	GO:0009506: plasmodesma	5.09E-03
22	GO:0016020: membrane	5.38E-03
23	GO:0005794: Golgi apparatus	5.44E-03
24	GO:0005765: lysosomal membrane	6.62E-03
25	GO:0005773: vacuole	7.17E-03
26	GO:0031012: extracellular matrix	7.96E-03
27	GO:0005839: proteasome core complex	1.25E-02
28	GO:0031225: anchored component of membrane	1.49E-02
29	GO:0005737: cytoplasm	1.56E-02
30	GO:0005774: vacuolar membrane	2.05E-02
31	GO:0005887: integral component of plasma membrane	2.10E-02
32	GO:0000145: exocyst	2.15E-02
33	GO:0005788: endoplasmic reticulum lumen	2.78E-02
34	GO:0046658: anchored component of plasma membrane	2.80E-02
35	GO:0009505: plant-type cell wall	3.07E-02
36	GO:0019005: SCF ubiquitin ligase complex	3.23E-02
37	GO:0000151: ubiquitin ligase complex	3.23E-02
38	GO:0031902: late endosome membrane	4.32E-02