co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G39890

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046865: terpenoid transport	0.00E+00
2	GO:0006182: cGMP biosynthetic process	0.00E+00
3	GO:0072722: response to amitrole	0.00E+00
4	GO:0009617: response to bacterium	7.63E-11
5	GO:0071456: cellular response to hypoxia	3.91E-08
6	GO:0042742: defense response to bacterium	2.18E-06
7	GO:0010120: camalexin biosynthetic process	4.29E-06
8	GO:0010112: regulation of systemic acquired resistance	6.03E-06
9	GO:0050832: defense response to fungus	6.58E-06
10	GO:0009682: induced systemic resistance	1.40E-05
11	GO:0055114: oxidation-reduction process	2.68E-05
12	GO:0006468: protein phosphorylation	2.87E-05
13	GO:0070588: calcium ion transmembrane transport	3.29E-05
14	GO:0000162: tryptophan biosynthetic process	3.93E-05
15	GO:0009697: salicylic acid biosynthetic process	4.82E-05
16	GO:0002238: response to molecule of fungal origin	7.11E-05
17	GO:0010150: leaf senescence	8.40E-05
18	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	9.88E-05
19	GO:0030091: protein repair	1.67E-04
20	GO:0071586: CAAX-box protein processing	2.02E-04
21	GO:0015760: glucose-6-phosphate transport	2.02E-04
22	GO:0099132: ATP hydrolysis coupled cation transmembrane transport	2.02E-04
23	GO:0010726: positive regulation of hydrogen peroxide metabolic process	2.02E-04
24	GO:0033306: phytol metabolic process	2.02E-04
25	GO:0009700: indole phytoalexin biosynthetic process	2.02E-04
26	GO:0032491: detection of molecule of fungal origin	2.02E-04
27	GO:0042759: long-chain fatty acid biosynthetic process	2.02E-04
28	GO:0080120: CAAX-box protein maturation	2.02E-04
29	GO:0010204: defense response signaling pathway, resistance gene-independent	2.08E-04
30	GO:0009737: response to abscisic acid	2.09E-04
31	GO:0006032: chitin catabolic process	3.54E-04
32	GO:0052544: defense response by callose deposition in cell wall	4.10E-04
33	GO:0000272: polysaccharide catabolic process	4.10E-04
34	GO:0090057: root radial pattern formation	4.52E-04
35	GO:0002240: response to molecule of oomycetes origin	4.52E-04
36	GO:0044419: interspecies interaction between organisms	4.52E-04
37	GO:0031349: positive regulation of defense response	4.52E-04
38	GO:0015712: hexose phosphate transport	4.52E-04
39	GO:0002213: defense response to insect	4.70E-04
40	GO:0009407: toxin catabolic process	4.84E-04
41	GO:0032259: methylation	5.89E-04
42	GO:0002237: response to molecule of bacterial origin	6.01E-04
43	GO:0042343: indole glucosinolate metabolic process	6.71E-04
44	GO:0010272: response to silver ion	7.36E-04
45	GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway	7.36E-04
46	GO:0015692: lead ion transport	7.36E-04
47	GO:0048281: inflorescence morphogenesis	7.36E-04
48	GO:0002230: positive regulation of defense response to virus by host	7.36E-04
49	GO:0015714: phosphoenolpyruvate transport	7.36E-04
50	GO:0080168: abscisic acid transport	7.36E-04
51	GO:0010359: regulation of anion channel activity	7.36E-04
52	GO:0035436: triose phosphate transmembrane transport	7.36E-04
53	GO:0051707: response to other organism	7.94E-04
54	GO:0009636: response to toxic substance	9.17E-04
55	GO:0016998: cell wall macromolecule catabolic process	9.94E-04
56	GO:0006107: oxaloacetate metabolic process	1.05E-03
57	GO:1902290: positive regulation of defense response to oomycetes	1.05E-03
58	GO:0046513: ceramide biosynthetic process	1.05E-03
59	GO:0010116: positive regulation of abscisic acid biosynthetic process	1.05E-03
60	GO:0019438: aromatic compound biosynthetic process	1.05E-03
61	GO:0015713: phosphoglycerate transport	1.40E-03
62	GO:0006734: NADH metabolic process	1.40E-03
63	GO:0080142: regulation of salicylic acid biosynthetic process	1.40E-03
64	GO:0010109: regulation of photosynthesis	1.40E-03
65	GO:0046345: abscisic acid catabolic process	1.40E-03
66	GO:0009626: plant-type hypersensitive response	1.53E-03
67	GO:0009620: response to fungus	1.59E-03
68	GO:0034052: positive regulation of plant-type hypersensitive response	1.78E-03
69	GO:0000304: response to singlet oxygen	1.78E-03
70	GO:0002229: defense response to oomycetes	1.98E-03
71	GO:0010193: response to ozone	1.98E-03
72	GO:0060918: auxin transport	2.19E-03
73	GO:1902456: regulation of stomatal opening	2.19E-03
74	GO:0009117: nucleotide metabolic process	2.19E-03
75	GO:0009643: photosynthetic acclimation	2.19E-03
76	GO:0009759: indole glucosinolate biosynthetic process	2.19E-03
77	GO:0006561: proline biosynthetic process	2.19E-03
78	GO:0010942: positive regulation of cell death	2.19E-03
79	GO:0009751: response to salicylic acid	2.90E-03
80	GO:0009816: defense response to bacterium, incompatible interaction	3.01E-03
81	GO:1900056: negative regulation of leaf senescence	3.09E-03
82	GO:1900057: positive regulation of leaf senescence	3.09E-03
83	GO:1902074: response to salt	3.09E-03
84	GO:0009627: systemic acquired resistance	3.17E-03
85	GO:0009787: regulation of abscisic acid-activated signaling pathway	3.59E-03
86	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	3.59E-03
87	GO:0009819: drought recovery	3.59E-03
88	GO:0006102: isocitrate metabolic process	3.59E-03
89	GO:0009699: phenylpropanoid biosynthetic process	4.10E-03
90	GO:0043562: cellular response to nitrogen levels	4.10E-03
91	GO:0009808: lignin metabolic process	4.10E-03
92	GO:0007166: cell surface receptor signaling pathway	4.24E-03
93	GO:0010043: response to zinc ion	4.28E-03
94	GO:0007568: aging	4.28E-03
95	GO:0019432: triglyceride biosynthetic process	4.65E-03
96	GO:0045087: innate immune response	4.69E-03
97	GO:0006099: tricarboxylic acid cycle	4.90E-03
98	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	5.21E-03
99	GO:1900426: positive regulation of defense response to bacterium	5.21E-03
100	GO:0009870: defense response signaling pathway, resistance gene-dependent	5.80E-03
101	GO:0042542: response to hydrogen peroxide	5.80E-03
102	GO:0009089: lysine biosynthetic process via diaminopimelate	6.41E-03
103	GO:0048229: gametophyte development	6.41E-03
104	GO:0006855: drug transmembrane transport	7.05E-03
105	GO:0006952: defense response	7.10E-03
106	GO:0009846: pollen germination	7.58E-03
107	GO:0006108: malate metabolic process	7.70E-03
108	GO:0009718: anthocyanin-containing compound biosynthetic process	7.70E-03
109	GO:0080167: response to karrikin	8.18E-03
110	GO:0006541: glutamine metabolic process	8.37E-03
111	GO:0044550: secondary metabolite biosynthetic process	9.10E-03
112	GO:0000027: ribosomal large subunit assembly	1.05E-02
113	GO:0080147: root hair cell development	1.05E-02
114	GO:2000377: regulation of reactive oxygen species metabolic process	1.05E-02
115	GO:0005992: trehalose biosynthetic process	1.05E-02
116	GO:0009624: response to nematode	1.16E-02
117	GO:0098542: defense response to other organism	1.21E-02
118	GO:0009814: defense response, incompatible interaction	1.29E-02
119	GO:0031348: negative regulation of defense response	1.29E-02
120	GO:0009625: response to insect	1.37E-02
121	GO:0010227: floral organ abscission	1.37E-02
122	GO:0010584: pollen exine formation	1.45E-02
123	GO:0006817: phosphate ion transport	1.45E-02
124	GO:0009958: positive gravitropism	1.71E-02
125	GO:0048544: recognition of pollen	1.80E-02
126	GO:0009749: response to glucose	1.89E-02
127	GO:0009851: auxin biosynthetic process	1.89E-02
128	GO:0040008: regulation of growth	1.92E-02
129	GO:0000302: response to reactive oxygen species	1.99E-02
130	GO:0006979: response to oxidative stress	2.08E-02
131	GO:0032502: developmental process	2.08E-02
132	GO:0009630: gravitropism	2.08E-02
133	GO:0019760: glucosinolate metabolic process	2.28E-02
134	GO:0010252: auxin homeostasis	2.28E-02
135	GO:0051607: defense response to virus	2.48E-02
136	GO:0009615: response to virus	2.58E-02
137	GO:0016049: cell growth	3.01E-02
138	GO:0009817: defense response to fungus, incompatible interaction	3.12E-02
139	GO:0009813: flavonoid biosynthetic process	3.23E-02
140	GO:0006970: response to osmotic stress	3.35E-02
141	GO:0010119: regulation of stomatal movement	3.46E-02
142	GO:0046777: protein autophosphorylation	4.12E-02
143	GO:0009744: response to sucrose	4.42E-02
144	GO:0009651: response to salt stress	4.65E-02

Rank	GO Term	Adjusted P value
1	GO:0047720: indoleacetaldoxime dehydratase activity	0.00E+00
2	GO:0010298: dihydrocamalexic acid decarboxylase activity	0.00E+00
3	GO:0050269: coniferyl-aldehyde dehydrogenase activity	0.00E+00
4	GO:0004674: protein serine/threonine kinase activity	2.70E-06
5	GO:0016301: kinase activity	7.93E-06
6	GO:0005388: calcium-transporting ATPase activity	2.22E-05
7	GO:0004364: glutathione transferase activity	7.71E-05
8	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	8.25E-05
9	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	9.88E-05
10	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.02E-04
11	GO:0033984: indole-3-glycerol-phosphate lyase activity	2.02E-04
12	GO:0010285: L,L-diaminopimelate aminotransferase activity	2.02E-04
13	GO:0005524: ATP binding	2.20E-04
14	GO:0004568: chitinase activity	3.54E-04
15	GO:0008171: O-methyltransferase activity	3.54E-04
16	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	3.99E-04
17	GO:0004129: cytochrome-c oxidase activity	4.10E-04
18	GO:0005506: iron ion binding	4.30E-04
19	GO:0015152: glucose-6-phosphate transmembrane transporter activity	4.52E-04
20	GO:0004385: guanylate kinase activity	4.52E-04
21	GO:0050291: sphingosine N-acyltransferase activity	4.52E-04
22	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	5.14E-04
23	GO:0008061: chitin binding	6.71E-04
24	GO:0004383: guanylate cyclase activity	7.36E-04
25	GO:0071917: triose-phosphate transmembrane transporter activity	7.36E-04
26	GO:0004049: anthranilate synthase activity	7.36E-04
27	GO:0019825: oxygen binding	8.30E-04
28	GO:0005516: calmodulin binding	9.23E-04
29	GO:0004449: isocitrate dehydrogenase (NAD+) activity	1.05E-03
30	GO:0020037: heme binding	1.22E-03
31	GO:0010279: indole-3-acetic acid amido synthetase activity	1.40E-03
32	GO:0015120: phosphoglycerate transmembrane transporter activity	1.40E-03
33	GO:0004834: tryptophan synthase activity	1.40E-03
34	GO:0004737: pyruvate decarboxylase activity	1.40E-03
35	GO:0050660: flavin adenine dinucleotide binding	1.47E-03
36	GO:0010294: abscisic acid glucosyltransferase activity	1.78E-03
37	GO:0045431: flavonol synthase activity	1.78E-03
38	GO:0004029: aldehyde dehydrogenase (NAD) activity	2.19E-03
39	GO:0016615: malate dehydrogenase activity	2.19E-03
40	GO:0030976: thiamine pyrophosphate binding	2.19E-03
41	GO:0030060: L-malate dehydrogenase activity	2.63E-03
42	GO:0004144: diacylglycerol O-acyltransferase activity	2.63E-03
43	GO:0004656: procollagen-proline 4-dioxygenase activity	2.63E-03
44	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	2.63E-03
45	GO:0016831: carboxy-lyase activity	3.09E-03
46	GO:0008320: protein transmembrane transporter activity	3.09E-03
47	GO:0009055: electron carrier activity	3.30E-03
48	GO:0030247: polysaccharide binding	3.35E-03
49	GO:0004683: calmodulin-dependent protein kinase activity	3.35E-03
50	GO:0004033: aldo-keto reductase (NADP) activity	3.59E-03
51	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.69E-03
52	GO:0005509: calcium ion binding	5.18E-03
53	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	5.21E-03
54	GO:0008168: methyltransferase activity	5.93E-03
55	GO:0008559: xenobiotic-transporting ATPase activity	6.41E-03
56	GO:0004022: alcohol dehydrogenase (NAD) activity	7.70E-03
57	GO:0005315: inorganic phosphate transmembrane transporter activity	7.70E-03
58	GO:0005262: calcium channel activity	7.70E-03
59	GO:0004175: endopeptidase activity	8.37E-03
60	GO:0004190: aspartic-type endopeptidase activity	9.07E-03
61	GO:0004867: serine-type endopeptidase inhibitor activity	9.07E-03
62	GO:0052689: carboxylic ester hydrolase activity	9.30E-03
63	GO:0008134: transcription factor binding	1.05E-02
64	GO:0031418: L-ascorbic acid binding	1.05E-02
65	GO:0030246: carbohydrate binding	1.11E-02
66	GO:0016746: transferase activity, transferring acyl groups	1.20E-02
67	GO:0004298: threonine-type endopeptidase activity	1.21E-02
68	GO:0004499: N,N-dimethylaniline monooxygenase activity	1.45E-02
69	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.88E-02
70	GO:0015297: antiporter activity	1.92E-02
71	GO:0008483: transaminase activity	2.38E-02
72	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.56E-02
73	GO:0051213: dioxygenase activity	2.58E-02
74	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.80E-02
75	GO:0004806: triglyceride lipase activity	2.90E-02
76	GO:0000287: magnesium ion binding	3.06E-02
77	GO:0015238: drug transmembrane transporter activity	3.23E-02
78	GO:0004222: metalloendopeptidase activity	3.35E-02
79	GO:0030145: manganese ion binding	3.46E-02
80	GO:0008233: peptidase activity	3.79E-02
81	GO:0043565: sequence-specific DNA binding	3.86E-02
82	GO:0004497: monooxygenase activity	3.86E-02
83	GO:0050661: NADP binding	4.05E-02
84	GO:0005507: copper ion binding	4.28E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	7.16E-05
2	GO:0005829: cytosol	1.66E-04
3	GO:0016021: integral component of membrane	3.67E-04
4	GO:0030134: ER to Golgi transport vesicle	4.52E-04
5	GO:0005901: caveola	4.52E-04
6	GO:0005783: endoplasmic reticulum	6.85E-04
7	GO:0005751: mitochondrial respiratory chain complex IV	7.36E-04
8	GO:0030660: Golgi-associated vesicle membrane	1.40E-03
9	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	1.40E-03
10	GO:0005746: mitochondrial respiratory chain	1.78E-03
11	GO:0043231: intracellular membrane-bounded organelle	3.44E-03
12	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	3.59E-03
13	GO:0005789: endoplasmic reticulum membrane	3.83E-03
14	GO:0019773: proteasome core complex, alpha-subunit complex	4.10E-03
15	GO:0000325: plant-type vacuole	4.28E-03
16	GO:0005765: lysosomal membrane	6.41E-03
17	GO:0005774: vacuolar membrane	6.75E-03
18	GO:0030176: integral component of endoplasmic reticulum membrane	9.07E-03
19	GO:0005839: proteasome core complex	1.21E-02
20	GO:0016020: membrane	1.69E-02
21	GO:0005887: integral component of plasma membrane	1.98E-02
22	GO:0048046: apoplast	2.05E-02
23	GO:0032580: Golgi cisterna membrane	2.28E-02
24	GO:0046658: anchored component of plasma membrane	2.67E-02
25	GO:0005576: extracellular region	3.45E-02
26	GO:0031969: chloroplast membrane	3.86E-02
27	GO:0005773: vacuole	4.13E-02