gene detail

Gene description

TAIR ID: AT4G35480

Short description: RING-H2 finger A3B

Pathogen responsiveness: 0.25

General responsiveness: -0.78

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

protein ubiquitination, proteasome-mediated ubiquitin-dependent protein catabolic process, defense response, response to chitin

GO cellular component

integral component of membrane, nucleus

GO molecular function

metal ion binding, ubiquitin protein ligase activity

Protein domain

Pfam	PF13639, Ring finger domain
SMART	SM00184, RING

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT3G24650, AT2G43010, AT4G36990, AT3G26790

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view

Differentially expressed condition

27 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE16472	Col, WT, Flg22 0 min	Col, WT, Flg22 30 min	2.42	3.48E-02
GSE17464	Laer, control	Laer, Flg22 1 h	1.57	8.56E-05
GSE17464	Penta, control	Penta, Flg22 2 h	1.64	3.98E-05
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	1.67	1.86E-07
GSE2169	Col, WT, water	Col, WT, chitin 30 min	1.84	1.36E-08
GSE2169	Col, rre2, water	Col, rre2, chitin 30 min	1.60	9.43E-08
GSE2538	Col, WT, control	Col, WT, crab shell chitin 30 min	2.46	1.97E-07
GSE2538	Col, WT, control	Col, WT, purified chitin octamer 30 min	2.47	2.47E-07
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-1.81	1.12E-02
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.55	1.87E-02
GSE40544	Col, WT, control	Col, WT, PstDC3000 EV	1.52	3.00E-04
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	1.79	1.37E-09
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 4 h	1.52	3.37E-08
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	1.76	2.08E-09
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	1.52	1.54E-08
GSE45214	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 4 h	1.76	9.44E-11
GSE45214	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	1.88	4.40E-11
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	1.69	7.18E-11
GSE45214	Col, npr1, PstDC3000 AvrRpt2 0 h	Col, npr1, PstDC3000 AvrRpt2 4 h	1.88	5.13E-11
GSE4746	Col, WT, water 30 min	Col, WT, chitooctaose 30 min	2.09	9.08E-05
GSE52979	Col, WT, acetone	Col, WT, acetone flg22_24 h	1.98	3.05E-08
GSE52979	Col, WT, acetone	Col, WT, acetone flg22_2 h	3.59	2.51E-12
GSE52979	Col, WT, oxo_C14_HSL	Col, WT, oxo_C14_HSL flg22_24 h	1.90	4.95E-08
GSE52979	Col, WT, oxo_C14_HSL	Col, WT, oxo_C14_HSL flg22_2 h	3.91	7.73E-13
GSE5615	Col, WT, water 4 h	Col, WT, Flg22 4 h	1.91	5.39E-10
GSE5615	Col, WT, water 4 h	Col, WT, HrpZ 4 h	1.96	1.71E-10
GSE8319	Col, WT, control	Col, WT, chitooctaose 30 min	1.82	4.01E-12