co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G35480

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0012502: induction of programmed cell death	0.00E+00
2	GO:0010378: temperature compensation of the circadian clock	0.00E+00
3	GO:0090279: regulation of calcium ion import	0.00E+00
4	GO:0030644: cellular chloride ion homeostasis	0.00E+00
5	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
6	GO:0071474: cellular hyperosmotic response	0.00E+00
7	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
8	GO:0070584: mitochondrion morphogenesis	0.00E+00
9	GO:0042906: xanthine transport	0.00E+00
10	GO:0043171: peptide catabolic process	0.00E+00
11	GO:0009768: photosynthesis, light harvesting in photosystem I	1.04E-19
12	GO:0018298: protein-chromophore linkage	4.25E-12
13	GO:0015979: photosynthesis	1.12E-10
14	GO:0009645: response to low light intensity stimulus	4.87E-08
15	GO:0009409: response to cold	4.96E-08
16	GO:0009644: response to high light intensity	6.20E-08
17	GO:0010218: response to far red light	3.29E-07
18	GO:0010114: response to red light	1.14E-06
19	GO:0007623: circadian rhythm	3.27E-06
20	GO:0009769: photosynthesis, light harvesting in photosystem II	5.40E-06
21	GO:0009637: response to blue light	1.11E-05
22	GO:0009416: response to light stimulus	1.13E-05
23	GO:0042542: response to hydrogen peroxide	1.89E-05
24	GO:0080167: response to karrikin	1.83E-04
25	GO:0010196: nonphotochemical quenching	2.45E-04
26	GO:0015812: gamma-aminobutyric acid transport	3.04E-04
27	GO:0032958: inositol phosphate biosynthetic process	3.04E-04
28	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	3.04E-04
29	GO:0009609: response to symbiotic bacterium	3.04E-04
30	GO:0009414: response to water deprivation	4.75E-04
31	GO:0009688: abscisic acid biosynthetic process	6.31E-04
32	GO:0016126: sterol biosynthetic process	6.42E-04
33	GO:0030259: lipid glycosylation	6.66E-04
34	GO:0051170: nuclear import	6.66E-04
35	GO:0015720: allantoin transport	6.66E-04
36	GO:0051262: protein tetramerization	6.66E-04
37	GO:0006883: cellular sodium ion homeostasis	6.66E-04
38	GO:0015857: uracil transport	6.66E-04
39	GO:1902884: positive regulation of response to oxidative stress	6.66E-04
40	GO:0006970: response to osmotic stress	7.12E-04
41	GO:0009631: cold acclimation	1.07E-03
42	GO:0006598: polyamine catabolic process	1.08E-03
43	GO:0071705: nitrogen compound transport	1.08E-03
44	GO:1901562: response to paraquat	1.08E-03
45	GO:1902448: positive regulation of shade avoidance	1.08E-03
46	GO:0031936: negative regulation of chromatin silencing	1.55E-03
47	GO:1901332: negative regulation of lateral root development	1.55E-03
48	GO:0006020: inositol metabolic process	1.55E-03
49	GO:0010601: positive regulation of auxin biosynthetic process	1.55E-03
50	GO:0044211: CTP salvage	1.55E-03
51	GO:0048511: rhythmic process	1.76E-03
52	GO:0009269: response to desiccation	1.76E-03
53	GO:0009408: response to heat	1.80E-03
54	GO:0008643: carbohydrate transport	1.83E-03
55	GO:0010017: red or far-red light signaling pathway	1.92E-03
56	GO:0010508: positive regulation of autophagy	2.07E-03
57	GO:0044206: UMP salvage	2.07E-03
58	GO:0006646: phosphatidylethanolamine biosynthetic process	2.07E-03
59	GO:0009687: abscisic acid metabolic process	2.07E-03
60	GO:0015743: malate transport	2.07E-03
61	GO:0009765: photosynthesis, light harvesting	2.07E-03
62	GO:2000306: positive regulation of photomorphogenesis	2.07E-03
63	GO:1901002: positive regulation of response to salt stress	2.07E-03
64	GO:0010600: regulation of auxin biosynthetic process	2.07E-03
65	GO:0030104: water homeostasis	2.07E-03
66	GO:0042538: hyperosmotic salinity response	2.21E-03
67	GO:0009585: red, far-red light phototransduction	2.42E-03
68	GO:0043097: pyrimidine nucleoside salvage	2.65E-03
69	GO:0097428: protein maturation by iron-sulfur cluster transfer	2.65E-03
70	GO:0016123: xanthophyll biosynthetic process	2.65E-03
71	GO:0048578: positive regulation of long-day photoperiodism, flowering	2.65E-03
72	GO:0009737: response to abscisic acid	3.09E-03
73	GO:1900425: negative regulation of defense response to bacterium	3.27E-03
74	GO:0006206: pyrimidine nucleobase metabolic process	3.27E-03
75	GO:0009635: response to herbicide	3.27E-03
76	GO:0045962: positive regulation of development, heterochronic	3.27E-03
77	GO:0000302: response to reactive oxygen species	3.55E-03
78	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	3.93E-03
79	GO:0010555: response to mannitol	3.93E-03
80	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	3.93E-03
81	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	3.93E-03
82	GO:1901657: glycosyl compound metabolic process	4.04E-03
83	GO:0010286: heat acclimation	4.56E-03
84	GO:0080111: DNA demethylation	4.64E-03
85	GO:1902074: response to salt	4.64E-03
86	GO:0010038: response to metal ion	4.64E-03
87	GO:0010161: red light signaling pathway	4.64E-03
88	GO:0007050: cell cycle arrest	4.64E-03
89	GO:1900056: negative regulation of leaf senescence	4.64E-03
90	GO:0048437: floral organ development	4.64E-03
91	GO:0006355: regulation of transcription, DNA-templated	5.22E-03
92	GO:0009415: response to water	5.39E-03
93	GO:0010078: maintenance of root meristem identity	5.39E-03
94	GO:0009704: de-etiolation	5.39E-03
95	GO:0010928: regulation of auxin mediated signaling pathway	5.39E-03
96	GO:0010029: regulation of seed germination	5.42E-03
97	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	5.42E-03
98	GO:0015995: chlorophyll biosynthetic process	6.04E-03
99	GO:0010099: regulation of photomorphogenesis	6.18E-03
100	GO:0009827: plant-type cell wall modification	6.18E-03
101	GO:0007186: G-protein coupled receptor signaling pathway	6.18E-03
102	GO:0009817: defense response to fungus, incompatible interaction	6.69E-03
103	GO:0090333: regulation of stomatal closure	7.01E-03
104	GO:0000160: phosphorelay signal transduction system	7.03E-03
105	GO:0055085: transmembrane transport	7.49E-03
106	GO:0048354: mucilage biosynthetic process involved in seed coat development	7.87E-03
107	GO:0010380: regulation of chlorophyll biosynthetic process	7.87E-03
108	GO:0005982: starch metabolic process	7.87E-03
109	GO:0030042: actin filament depolymerization	7.87E-03
110	GO:0010018: far-red light signaling pathway	7.87E-03
111	GO:2000280: regulation of root development	7.87E-03
112	GO:0016051: carbohydrate biosynthetic process	8.49E-03
113	GO:0006995: cellular response to nitrogen starvation	8.77E-03
114	GO:0009641: shade avoidance	8.77E-03
115	GO:0010162: seed dormancy process	8.77E-03
116	GO:0009970: cellular response to sulfate starvation	8.77E-03
117	GO:0055062: phosphate ion homeostasis	8.77E-03
118	GO:0009651: response to salt stress	8.97E-03
119	GO:0006351: transcription, DNA-templated	9.01E-03
120	GO:0018119: peptidyl-cysteine S-nitrosylation	9.71E-03
121	GO:0046856: phosphatidylinositol dephosphorylation	9.71E-03
122	GO:0016925: protein sumoylation	1.07E-02
123	GO:0009640: photomorphogenesis	1.10E-02
124	GO:0051707: response to other organism	1.10E-02
125	GO:0006810: transport	1.14E-02
126	GO:0050826: response to freezing	1.17E-02
127	GO:0009718: anthocyanin-containing compound biosynthetic process	1.17E-02
128	GO:0009767: photosynthetic electron transport chain	1.17E-02
129	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	1.17E-02
130	GO:0010207: photosystem II assembly	1.27E-02
131	GO:0007015: actin filament organization	1.27E-02
132	GO:0009266: response to temperature stimulus	1.27E-02
133	GO:0019853: L-ascorbic acid biosynthetic process	1.38E-02
134	GO:0090351: seedling development	1.38E-02
135	GO:0042753: positive regulation of circadian rhythm	1.49E-02
136	GO:0007049: cell cycle	1.53E-02
137	GO:0009735: response to cytokinin	1.53E-02
138	GO:0016575: histone deacetylation	1.72E-02
139	GO:0006874: cellular calcium ion homeostasis	1.72E-02
140	GO:0003333: amino acid transmembrane transport	1.84E-02
141	GO:0010431: seed maturation	1.84E-02
142	GO:0061077: chaperone-mediated protein folding	1.84E-02
143	GO:0035556: intracellular signal transduction	1.89E-02
144	GO:0044550: secondary metabolite biosynthetic process	1.94E-02
145	GO:0035428: hexose transmembrane transport	1.96E-02
146	GO:0006012: galactose metabolic process	2.09E-02
147	GO:0071215: cellular response to abscisic acid stimulus	2.09E-02
148	GO:0045893: positive regulation of transcription, DNA-templated	2.15E-02
149	GO:0010214: seed coat development	2.22E-02
150	GO:0045492: xylan biosynthetic process	2.22E-02
151	GO:0008284: positive regulation of cell proliferation	2.35E-02
152	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.35E-02
153	GO:0042631: cellular response to water deprivation	2.48E-02
154	GO:0010182: sugar mediated signaling pathway	2.62E-02
155	GO:0046323: glucose import	2.62E-02
156	GO:0006814: sodium ion transport	2.76E-02
157	GO:0042752: regulation of circadian rhythm	2.76E-02
158	GO:0009058: biosynthetic process	2.79E-02
159	GO:0009845: seed germination	2.86E-02
160	GO:0009556: microsporogenesis	2.90E-02
161	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	3.04E-02
162	GO:0005975: carbohydrate metabolic process	3.39E-02
163	GO:0009639: response to red or far red light	3.49E-02
164	GO:0006914: autophagy	3.49E-02
165	GO:0016125: sterol metabolic process	3.49E-02
166	GO:0055114: oxidation-reduction process	3.76E-02
167	GO:0010228: vegetative to reproductive phase transition of meristem	3.82E-02
168	GO:0009739: response to gibberellin	4.08E-02
169	GO:0006974: cellular response to DNA damage stimulus	4.27E-02
170	GO:0010468: regulation of gene expression	4.35E-02
171	GO:0006888: ER to Golgi vesicle-mediated transport	4.44E-02
172	GO:0048573: photoperiodism, flowering	4.44E-02
173	GO:0048481: plant ovule development	4.77E-02
174	GO:0009813: flavonoid biosynthetic process	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0080082: esculin beta-glucosidase activity	0.00E+00
2	GO:0004567: beta-mannosidase activity	0.00E+00
3	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
4	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
5	GO:0019912: cyclin-dependent protein kinase activating kinase activity	0.00E+00
6	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
7	GO:0009540: zeaxanthin epoxidase [overall] activity	0.00E+00
8	GO:0004306: ethanolamine-phosphate cytidylyltransferase activity	0.00E+00
9	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
10	GO:0042907: xanthine transmembrane transporter activity	0.00E+00
11	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
12	GO:0031409: pigment binding	4.44E-18
13	GO:0016168: chlorophyll binding	2.56E-14
14	GO:0005253: anion channel activity	6.01E-05
15	GO:0070006: metalloaminopeptidase activity	3.04E-04
16	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	3.04E-04
17	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	3.04E-04
18	GO:0016906: sterol 3-beta-glucosyltransferase activity	3.04E-04
19	GO:0000829: inositol heptakisphosphate kinase activity	3.04E-04
20	GO:0010013: N-1-naphthylphthalamic acid binding	3.04E-04
21	GO:0005227: calcium activated cation channel activity	3.04E-04
22	GO:0080079: cellobiose glucosidase activity	3.04E-04
23	GO:0102203: brassicasterol glucosyltransferase activity	3.04E-04
24	GO:0102202: soladodine glucosyltransferase activity	3.04E-04
25	GO:0000828: inositol hexakisphosphate kinase activity	3.04E-04
26	GO:0005515: protein binding	3.58E-04
27	GO:0016630: protochlorophyllide reductase activity	6.66E-04
28	GO:0015180: L-alanine transmembrane transporter activity	6.66E-04
29	GO:0005274: allantoin uptake transmembrane transporter activity	6.66E-04
30	GO:0047216: inositol 3-alpha-galactosyltransferase activity	6.66E-04
31	GO:0004565: beta-galactosidase activity	9.40E-04
32	GO:0004096: catalase activity	1.08E-03
33	GO:0046592: polyamine oxidase activity	1.08E-03
34	GO:0019948: SUMO activating enzyme activity	1.08E-03
35	GO:0017150: tRNA dihydrouridine synthase activity	1.08E-03
36	GO:0015181: arginine transmembrane transporter activity	1.55E-03
37	GO:0015189: L-lysine transmembrane transporter activity	1.55E-03
38	GO:0000254: C-4 methylsterol oxidase activity	1.55E-03
39	GO:0004707: MAP kinase activity	1.76E-03
40	GO:0004506: squalene monooxygenase activity	2.07E-03
41	GO:0004930: G-protein coupled receptor activity	2.07E-03
42	GO:0042277: peptide binding	2.07E-03
43	GO:0004845: uracil phosphoribosyltransferase activity	2.07E-03
44	GO:0015210: uracil transmembrane transporter activity	2.07E-03
45	GO:0005313: L-glutamate transmembrane transporter activity	2.07E-03
46	GO:0005215: transporter activity	2.09E-03
47	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	2.65E-03
48	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	2.65E-03
49	GO:0046872: metal ion binding	2.99E-03
50	GO:0005247: voltage-gated chloride channel activity	3.27E-03
51	GO:2001070: starch binding	3.27E-03
52	GO:0004629: phospholipase C activity	3.27E-03
53	GO:0015562: efflux transmembrane transporter activity	3.27E-03
54	GO:0004849: uridine kinase activity	3.93E-03
55	GO:0005261: cation channel activity	3.93E-03
56	GO:0004435: phosphatidylinositol phospholipase C activity	3.93E-03
57	GO:0000156: phosphorelay response regulator activity	4.04E-03
58	GO:0015140: malate transmembrane transporter activity	4.64E-03
59	GO:0004033: aldo-keto reductase (NADP) activity	5.39E-03
60	GO:0004564: beta-fructofuranosidase activity	5.39E-03
61	GO:0005337: nucleoside transmembrane transporter activity	5.39E-03
62	GO:0102483: scopolin beta-glucosidase activity	6.04E-03
63	GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity	6.18E-03
64	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	6.18E-03
65	GO:0071949: FAD binding	7.01E-03
66	GO:0000989: transcription factor activity, transcription factor binding	7.01E-03
67	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	7.01E-03
68	GO:0005351: sugar:proton symporter activity	7.39E-03
69	GO:0004575: sucrose alpha-glucosidase activity	7.87E-03
70	GO:0008422: beta-glucosidase activity	9.27E-03
71	GO:0004177: aminopeptidase activity	9.71E-03
72	GO:0044183: protein binding involved in protein folding	9.71E-03
73	GO:0047372: acylglycerol lipase activity	9.71E-03
74	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	1.07E-02
75	GO:0008270: zinc ion binding	1.10E-02
76	GO:0004022: alcohol dehydrogenase (NAD) activity	1.17E-02
77	GO:0005315: inorganic phosphate transmembrane transporter activity	1.17E-02
78	GO:0005198: structural molecule activity	1.23E-02
79	GO:0008131: primary amine oxidase activity	1.27E-02
80	GO:0031624: ubiquitin conjugating enzyme binding	1.27E-02
81	GO:0003712: transcription cofactor activity	1.38E-02
82	GO:0005217: intracellular ligand-gated ion channel activity	1.38E-02
83	GO:0004970: ionotropic glutamate receptor activity	1.38E-02
84	GO:0003700: transcription factor activity, sequence-specific DNA binding	1.46E-02
85	GO:0051536: iron-sulfur cluster binding	1.60E-02
86	GO:0004407: histone deacetylase activity	1.60E-02
87	GO:0008324: cation transmembrane transporter activity	1.72E-02
88	GO:0051087: chaperone binding	1.72E-02
89	GO:0005216: ion channel activity	1.72E-02
90	GO:0019706: protein-cysteine S-palmitoyltransferase activity	1.84E-02
91	GO:0022891: substrate-specific transmembrane transporter activity	2.09E-02
92	GO:0008514: organic anion transmembrane transporter activity	2.22E-02
93	GO:0003677: DNA binding	2.60E-02
94	GO:0008536: Ran GTPase binding	2.62E-02
95	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.72E-02
96	GO:0005355: glucose transmembrane transporter activity	2.76E-02
97	GO:0015144: carbohydrate transmembrane transporter activity	3.17E-02
98	GO:0015297: antiporter activity	3.49E-02
99	GO:0008375: acetylglucosaminyltransferase activity	4.27E-02
100	GO:0005506: iron ion binding	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0009783: photosystem II antenna complex	0.00E+00
2	GO:0009522: photosystem I	9.96E-16
3	GO:0030076: light-harvesting complex	5.40E-14
4	GO:0010287: plastoglobule	1.04E-13
5	GO:0009534: chloroplast thylakoid	2.16E-11
6	GO:0009579: thylakoid	2.62E-10
7	GO:0009535: chloroplast thylakoid membrane	2.72E-09
8	GO:0009941: chloroplast envelope	1.48E-08
9	GO:0016021: integral component of membrane	1.17E-07
10	GO:0009523: photosystem II	9.22E-07
11	GO:0009517: PSII associated light-harvesting complex II	6.01E-05
12	GO:0042651: thylakoid membrane	1.31E-04
13	GO:0016020: membrane	5.82E-04
14	GO:0043036: starch grain	6.66E-04
15	GO:0009898: cytoplasmic side of plasma membrane	2.07E-03
16	GO:0032586: protein storage vacuole membrane	2.07E-03
17	GO:0030127: COPII vesicle coat	3.27E-03
18	GO:0034707: chloride channel complex	3.27E-03
19	GO:0009533: chloroplast stromal thylakoid	4.64E-03
20	GO:0009507: chloroplast	4.71E-03
21	GO:0009538: photosystem I reaction center	5.39E-03
22	GO:0000326: protein storage vacuole	6.18E-03
23	GO:0000151: ubiquitin ligase complex	6.69E-03
24	GO:0031090: organelle membrane	7.01E-03
25	GO:0010494: cytoplasmic stress granule	7.01E-03
26	GO:0031307: integral component of mitochondrial outer membrane	1.07E-02
27	GO:0005773: vacuole	1.09E-02
28	GO:0030095: chloroplast photosystem II	1.27E-02
29	GO:0031966: mitochondrial membrane	1.38E-02
30	GO:0009654: photosystem II oxygen evolving complex	1.72E-02
31	GO:0015629: actin cytoskeleton	2.09E-02
32	GO:0005777: peroxisome	2.15E-02
33	GO:0019898: extrinsic component of membrane	2.90E-02
34	GO:0000932: P-body	3.95E-02
35	GO:0005622: intracellular	4.06E-02
36	GO:0005667: transcription factor complex	4.27E-02
37	GO:0009707: chloroplast outer membrane	4.77E-02