Gene: AT4G24780
     

Gene description


TAIR ID: AT4G24780

Short description: Pectin lyase-like superfamily protein

Pathogen responsiveness: 1.18

General responsiveness: 0.26

Orthologous


Rice: No orthologous gene
Maize: No orthologous gene
Wheat: No orthologous gene

GO biological process


pectin catabolic process, response to nematode


GO cellular component


extracellular region, membrane


GO molecular function


pectate lyase activity, metal ion binding, lyase activity


Protein domain


PfamPF00544, Pectate lyase
SMARTSM00656, Amb_all

Metabolic pathway


Not involved in metabolic pathway


Transcriptional regulation


Regulator:
AT5G13790, AT4G18770, AT1G24260, AT5G61850

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 2

click to view PPI network

Differentially expressed condition


37 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE12856Col, WT, controlCol, WT, Bg h-1.861.59E-06
GSE12856Col, ataf1, controlCol, ataf1, Bg h-1.947.75E-07
GSE13739Col, WT, control 0 hCol, WT, G.orontii 6 h-1.604.37E-03
GSE17464Laer, controlLaer, Alternaria brassicicola 3 d2.294.88E-04
GSE17464Laer, controlLaer, Flg22 1 h-2.216.54E-04
GSE17464Penta, controlPenta, Alternaria brassicicola 3 d2.061.55E-03
GSE17464Penta, controlPenta, PstDC3000 12 h2.012.02E-03
GSE17500Col, 35S:AFB1, control 0 hCol, 35S:AFB1, PstDC3000 24 h-2.941.41E-04
GSE17500Col, WT, control 0 hCol, WT, PstDC3000 24 h-3.799.80E-06
GSE17500Col, miR393, control 0 hCol, miR393, PstDC3000 24 h-2.811.78E-04
GSE18978Col, WT, control 24 hCol, WT, PsmES4326 24 h-5.648.99E-10
GSE37269Ei2, WT, controlEi2, WT, TEV 21 d-2.265.58E-03
GSE40544Col, WT, controlCol, WT, PstDC3000 AvrRpt2-1.703.71E-04
GSE40544Col, WT, controlCol, WT, PstDC3000 EV-2.026.30E-05
GSE40544Col, Sid2, controlCol, Sid2, PstDC3000 EV-1.728.38E-04
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 12 h-4.661.44E-12
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 4 h-2.581.85E-08
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 8 h-4.424.40E-12
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 12 h-3.243.05E-10
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h-3.597.87E-11
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 8 h-3.733.45E-11
GSE45214Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 4 h-2.379.11E-09
GSE45214Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h-2.456.17E-09
GSE45214Col, med16, PstDC3000 AvrRpt2 0 hCol, med16, PstDC3000 AvrRpt2 4 h-3.655.86E-12
GSE50526Col, WT, mock 24 hCol, WT, A. brassicicola 24 h-2.033.71E-02
GSE5520Col, WT, control 10 hCol, WT, Cor- 10 h-2.793.27E-04
GSE5520Col, WT, control 24 hCol, WT, PstDC3000 24 h-2.522.38E-03
GSE5520Col, WT, control 7 hCol, WT, PstDC3000 7 h-2.617.70E-05
GSE56094Col, WT, control 10 hCol, WT, PstDC3000 10 h-2.518.84E-08
GSE56094Col, WT, control 11 hCol, WT, PstDC3000 11 h-2.252.01E-06
GSE56094Col, WT, control 12 hCol, WT, PstDC3000 12 h-1.924.43E-05
GSE56094Col, WT, control 13 hCol, WT, PstDC3000 13 h-3.223.72E-11
GSE56094Col, WT, control 9 hCol, WT, PstDC3000 9 h-1.888.44E-05
GSE5616Col, WT, water 6 hCol, WT, P. infestans 6 h-1.535.00E-07
GSE58954Col, WT, Psm AvrRpt2 0 hCol, WT, Psm AvrRpt2 6 h-2.951.21E-03
GSE6176Col, WT, control 12 hCol, WT, PstDC3000 12 h-1.784.02E-05
GSE9674Ws-4, AtMYB30 ox, controlWs-4, AtMYB30 ox, Xanthomonas strain Xcc147 2-4 h-2.224.78E-02






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