co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G24780

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0000372: Group I intron splicing	0.00E+00
2	GO:0080127: fruit septum development	0.00E+00
3	GO:0032212: positive regulation of telomere maintenance via telomerase	0.00E+00
4	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
5	GO:0032206: positive regulation of telomere maintenance	0.00E+00
6	GO:0046486: glycerolipid metabolic process	0.00E+00
7	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
8	GO:0019685: photosynthesis, dark reaction	0.00E+00
9	GO:0045014: negative regulation of transcription by glucose	0.00E+00
10	GO:0009926: auxin polar transport	2.38E-04
11	GO:0009451: RNA modification	2.99E-04
12	GO:0043489: RNA stabilization	3.07E-04
13	GO:0043609: regulation of carbon utilization	3.07E-04
14	GO:0051013: microtubule severing	3.07E-04
15	GO:0034757: negative regulation of iron ion transport	3.07E-04
16	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	3.07E-04
17	GO:0071482: cellular response to light stimulus	3.84E-04
18	GO:0000373: Group II intron splicing	4.63E-04
19	GO:0006650: glycerophospholipid metabolic process	6.71E-04
20	GO:0061062: regulation of nematode larval development	6.71E-04
21	GO:0010271: regulation of chlorophyll catabolic process	6.71E-04
22	GO:0001736: establishment of planar polarity	6.71E-04
23	GO:0043039: tRNA aminoacylation	6.71E-04
24	GO:0010582: floral meristem determinacy	8.40E-04
25	GO:0009734: auxin-activated signaling pathway	8.72E-04
26	GO:0006000: fructose metabolic process	1.09E-03
27	GO:0046168: glycerol-3-phosphate catabolic process	1.09E-03
28	GO:0080117: secondary growth	1.09E-03
29	GO:0042780: tRNA 3'-end processing	1.09E-03
30	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	1.09E-03
31	GO:0045910: negative regulation of DNA recombination	1.09E-03
32	GO:0009825: multidimensional cell growth	1.19E-03
33	GO:0006072: glycerol-3-phosphate metabolic process	1.56E-03
34	GO:2001141: regulation of RNA biosynthetic process	1.56E-03
35	GO:0045017: glycerolipid biosynthetic process	1.56E-03
36	GO:0051639: actin filament network formation	1.56E-03
37	GO:0010239: chloroplast mRNA processing	1.56E-03
38	GO:0006021: inositol biosynthetic process	2.09E-03
39	GO:0009956: radial pattern formation	2.09E-03
40	GO:0051764: actin crosslink formation	2.09E-03
41	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.12E-03
42	GO:0009733: response to auxin	2.21E-03
43	GO:0080110: sporopollenin biosynthetic process	2.67E-03
44	GO:0009107: lipoate biosynthetic process	2.67E-03
45	GO:0010158: abaxial cell fate specification	2.67E-03
46	GO:0009658: chloroplast organization	2.98E-03
47	GO:0048831: regulation of shoot system development	3.30E-03
48	GO:0003006: developmental process involved in reproduction	3.30E-03
49	GO:0016554: cytidine to uridine editing	3.30E-03
50	GO:0010583: response to cyclopentenone	3.83E-03
51	GO:0009793: embryo development ending in seed dormancy	3.87E-03
52	GO:0009942: longitudinal axis specification	3.97E-03
53	GO:0048509: regulation of meristem development	3.97E-03
54	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	3.97E-03
55	GO:0009828: plant-type cell wall loosening	4.35E-03
56	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.35E-03
57	GO:0010050: vegetative phase change	4.68E-03
58	GO:0010098: suspensor development	4.68E-03
59	GO:0015693: magnesium ion transport	4.68E-03
60	GO:0009610: response to symbiotic fungus	4.68E-03
61	GO:0046620: regulation of organ growth	5.44E-03
62	GO:0070413: trehalose metabolism in response to stress	5.44E-03
63	GO:0009850: auxin metabolic process	5.44E-03
64	GO:0000105: histidine biosynthetic process	5.44E-03
65	GO:0009657: plastid organization	6.23E-03
66	GO:0032544: plastid translation	6.23E-03
67	GO:0007389: pattern specification process	6.23E-03
68	GO:0006002: fructose 6-phosphate metabolic process	6.23E-03
69	GO:0048507: meristem development	7.07E-03
70	GO:0048589: developmental growth	7.07E-03
71	GO:0009832: plant-type cell wall biogenesis	7.11E-03
72	GO:0000160: phosphorelay signal transduction system	7.11E-03
73	GO:1900865: chloroplast RNA modification	7.94E-03
74	GO:0042761: very long-chain fatty acid biosynthetic process	7.94E-03
75	GO:0000723: telomere maintenance	7.94E-03
76	GO:0006535: cysteine biosynthetic process from serine	8.84E-03
77	GO:0048829: root cap development	8.84E-03
78	GO:0006298: mismatch repair	8.84E-03
79	GO:0006949: syncytium formation	8.84E-03
80	GO:0010192: mucilage biosynthetic process	8.84E-03
81	GO:0008285: negative regulation of cell proliferation	9.79E-03
82	GO:0006352: DNA-templated transcription, initiation	9.79E-03
83	GO:0048765: root hair cell differentiation	9.79E-03
84	GO:0005983: starch catabolic process	1.08E-02
85	GO:0010152: pollen maturation	1.08E-02
86	GO:0006790: sulfur compound metabolic process	1.08E-02
87	GO:0009636: response to toxic substance	1.25E-02
88	GO:0009965: leaf morphogenesis	1.25E-02
89	GO:0010020: chloroplast fission	1.28E-02
90	GO:0009933: meristem structural organization	1.28E-02
91	GO:0010207: photosystem II assembly	1.28E-02
92	GO:0010540: basipetal auxin transport	1.28E-02
93	GO:0048467: gynoecium development	1.28E-02
94	GO:0046854: phosphatidylinositol phosphorylation	1.39E-02
95	GO:0009664: plant-type cell wall organization	1.40E-02
96	GO:0010025: wax biosynthetic process	1.50E-02
97	GO:0009736: cytokinin-activated signaling pathway	1.50E-02
98	GO:0006863: purine nucleobase transport	1.50E-02
99	GO:0009833: plant-type primary cell wall biogenesis	1.50E-02
100	GO:0007010: cytoskeleton organization	1.62E-02
101	GO:0051017: actin filament bundle assembly	1.62E-02
102	GO:0005992: trehalose biosynthetic process	1.62E-02
103	GO:0019344: cysteine biosynthetic process	1.62E-02
104	GO:0043622: cortical microtubule organization	1.74E-02
105	GO:0006418: tRNA aminoacylation for protein translation	1.74E-02
106	GO:0080167: response to karrikin	1.77E-02
107	GO:0009416: response to light stimulus	1.78E-02
108	GO:0003333: amino acid transmembrane transport	1.86E-02
109	GO:0016226: iron-sulfur cluster assembly	1.98E-02
110	GO:0071215: cellular response to abscisic acid stimulus	2.11E-02
111	GO:0009686: gibberellin biosynthetic process	2.11E-02
112	GO:0010082: regulation of root meristem growth	2.11E-02
113	GO:0009624: response to nematode	2.14E-02
114	GO:0006284: base-excision repair	2.24E-02
115	GO:0010091: trichome branching	2.24E-02
116	GO:0010584: pollen exine formation	2.24E-02
117	GO:0048443: stamen development	2.24E-02
118	GO:0070417: cellular response to cold	2.37E-02
119	GO:0016117: carotenoid biosynthetic process	2.37E-02
120	GO:0000226: microtubule cytoskeleton organization	2.50E-02
121	GO:0000271: polysaccharide biosynthetic process	2.50E-02
122	GO:0010087: phloem or xylem histogenesis	2.50E-02
123	GO:0045489: pectin biosynthetic process	2.64E-02
124	GO:0010305: leaf vascular tissue pattern formation	2.64E-02
125	GO:0009958: positive gravitropism	2.64E-02
126	GO:0048868: pollen tube development	2.64E-02
127	GO:0008654: phospholipid biosynthetic process	2.92E-02
128	GO:0010090: trichome morphogenesis	3.36E-02
129	GO:0010252: auxin homeostasis	3.52E-02
130	GO:0009639: response to red or far red light	3.52E-02
131	GO:0006464: cellular protein modification process	3.52E-02
132	GO:0010029: regulation of seed germination	4.15E-02
133	GO:0009627: systemic acquired resistance	4.31E-02
134	GO:0010411: xyloglucan metabolic process	4.48E-02
135	GO:0030244: cellulose biosynthetic process	4.81E-02
136	GO:0010311: lateral root formation	4.98E-02
137	GO:0071555: cell wall organization	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0004401: histidinol-phosphatase activity	0.00E+00
2	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
3	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
4	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
5	GO:0008805: carbon-monoxide oxygenase activity	4.28E-06
6	GO:0010011: auxin binding	6.10E-05
7	GO:0004831: tyrosine-tRNA ligase activity	3.07E-04
8	GO:0008568: microtubule-severing ATPase activity	3.07E-04
9	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.07E-04
10	GO:0010347: L-galactose-1-phosphate phosphatase activity	3.07E-04
11	GO:0005227: calcium activated cation channel activity	3.07E-04
12	GO:0003723: RNA binding	4.26E-04
13	GO:0004519: endonuclease activity	5.20E-04
14	GO:0008934: inositol monophosphate 1-phosphatase activity	6.71E-04
15	GO:0052833: inositol monophosphate 4-phosphatase activity	6.71E-04
16	GO:0050736: O-malonyltransferase activity	6.71E-04
17	GO:0009884: cytokinin receptor activity	6.71E-04
18	GO:0019156: isoamylase activity	6.71E-04
19	GO:0050017: L-3-cyanoalanine synthase activity	6.71E-04
20	GO:0017118: lipoyltransferase activity	6.71E-04
21	GO:0016415: octanoyltransferase activity	6.71E-04
22	GO:0004047: aminomethyltransferase activity	6.71E-04
23	GO:0052832: inositol monophosphate 3-phosphatase activity	6.71E-04
24	GO:0042781: 3'-tRNA processing endoribonuclease activity	1.09E-03
25	GO:0005034: osmosensor activity	1.09E-03
26	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	1.09E-03
27	GO:0016707: gibberellin 3-beta-dioxygenase activity	1.09E-03
28	GO:0004857: enzyme inhibitor activity	1.47E-03
29	GO:0043047: single-stranded telomeric DNA binding	1.56E-03
30	GO:0001872: (1->3)-beta-D-glucan binding	1.56E-03
31	GO:0001053: plastid sigma factor activity	2.09E-03
32	GO:0016987: sigma factor activity	2.09E-03
33	GO:0010328: auxin influx transmembrane transporter activity	2.09E-03
34	GO:0005471: ATP:ADP antiporter activity	2.67E-03
35	GO:0008725: DNA-3-methyladenine glycosylase activity	2.67E-03
36	GO:0004556: alpha-amylase activity	3.30E-03
37	GO:2001070: starch binding	3.30E-03
38	GO:0030983: mismatched DNA binding	3.30E-03
39	GO:0019901: protein kinase binding	3.35E-03
40	GO:0019900: kinase binding	3.97E-03
41	GO:0004124: cysteine synthase activity	3.97E-03
42	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.97E-03
43	GO:0042162: telomeric DNA binding	4.68E-03
44	GO:0009672: auxin:proton symporter activity	7.94E-03
45	GO:0004673: protein histidine kinase activity	8.84E-03
46	GO:0004805: trehalose-phosphatase activity	8.84E-03
47	GO:0010329: auxin efflux transmembrane transporter activity	1.18E-02
48	GO:0015095: magnesium ion transmembrane transporter activity	1.18E-02
49	GO:0000155: phosphorelay sensor kinase activity	1.18E-02
50	GO:0043621: protein self-association	1.20E-02
51	GO:0008266: poly(U) RNA binding	1.28E-02
52	GO:0004535: poly(A)-specific ribonuclease activity	1.28E-02
53	GO:0008061: chitin binding	1.39E-02
54	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.50E-02
55	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.50E-02
56	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.50E-02
57	GO:0008134: transcription factor binding	1.62E-02
58	GO:0043424: protein histidine kinase binding	1.74E-02
59	GO:0005345: purine nucleobase transmembrane transporter activity	1.74E-02
60	GO:0004540: ribonuclease activity	1.86E-02
61	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.98E-02
62	GO:0030570: pectate lyase activity	2.11E-02
63	GO:0016760: cellulose synthase (UDP-forming) activity	2.11E-02
64	GO:0015035: protein disulfide oxidoreductase activity	2.20E-02
65	GO:0004871: signal transducer activity	2.36E-02
66	GO:0004812: aminoacyl-tRNA ligase activity	2.37E-02
67	GO:0016740: transferase activity	2.39E-02
68	GO:0016301: kinase activity	2.41E-02
69	GO:0008536: Ran GTPase binding	2.64E-02
70	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.68E-02
71	GO:0019843: rRNA binding	2.68E-02
72	GO:0010181: FMN binding	2.78E-02
73	GO:0050662: coenzyme binding	2.78E-02
74	GO:0016853: isomerase activity	2.78E-02
75	GO:0016762: xyloglucan:xyloglucosyl transferase activity	3.07E-02
76	GO:0000156: phosphorelay response regulator activity	3.36E-02
77	GO:0051015: actin filament binding	3.36E-02
78	GO:0046910: pectinesterase inhibitor activity	3.45E-02
79	GO:0016791: phosphatase activity	3.52E-02
80	GO:0016759: cellulose synthase activity	3.52E-02
81	GO:0003684: damaged DNA binding	3.52E-02
82	GO:0008017: microtubule binding	3.86E-02
83	GO:0030247: polysaccharide binding	4.48E-02
84	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.48E-02
85	GO:0042802: identical protein binding	4.68E-02
86	GO:0004674: protein serine/threonine kinase activity	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0009537: proplastid	0.00E+00
2	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
3	GO:0035452: extrinsic component of plastid membrane	0.00E+00
4	GO:0009507: chloroplast	2.57E-04
5	GO:0009569: chloroplast starch grain	6.71E-04
6	GO:0005697: telomerase holoenzyme complex	6.71E-04
7	GO:0009513: etioplast	6.71E-04
8	GO:0009509: chromoplast	1.09E-03
9	GO:0032432: actin filament bundle	1.56E-03
10	GO:0009331: glycerol-3-phosphate dehydrogenase complex	1.56E-03
11	GO:0009986: cell surface	4.68E-03
12	GO:0030529: intracellular ribonucleoprotein complex	5.19E-03
13	GO:0009501: amyloplast	5.44E-03
14	GO:0000784: nuclear chromosome, telomeric region	6.23E-03
15	GO:0009707: chloroplast outer membrane	6.77E-03
16	GO:0005884: actin filament	9.79E-03
17	GO:0016602: CCAAT-binding factor complex	1.18E-02
18	GO:0030095: chloroplast photosystem II	1.28E-02
19	GO:0009654: photosystem II oxygen evolving complex	1.74E-02
20	GO:0009532: plastid stroma	1.86E-02
21	GO:0019898: extrinsic component of membrane	2.92E-02