co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G24780

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090627: plant epidermal cell differentiation	0.00E+00
2	GO:0015995: chlorophyll biosynthetic process	1.76E-06
3	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.08E-05
4	GO:0009913: epidermal cell differentiation	1.54E-05
5	GO:0009828: plant-type cell wall loosening	3.59E-05
6	GO:0000160: phosphorelay signal transduction system	7.70E-05
7	GO:0001736: establishment of planar polarity	1.89E-04
8	GO:0035304: regulation of protein dephosphorylation	1.89E-04
9	GO:0009664: plant-type cell wall organization	2.02E-04
10	GO:0009736: cytokinin-activated signaling pathway	2.23E-04
11	GO:0090391: granum assembly	3.17E-04
12	GO:0010239: chloroplast mRNA processing	4.58E-04
13	GO:0048825: cotyledon development	5.39E-04
14	GO:0030007: cellular potassium ion homeostasis	6.09E-04
15	GO:0045490: pectin catabolic process	7.13E-04
16	GO:0048497: maintenance of floral organ identity	7.72E-04
17	GO:0010438: cellular response to sulfur starvation	7.72E-04
18	GO:0009823: cytokinin catabolic process	7.72E-04
19	GO:0009697: salicylic acid biosynthetic process	7.72E-04
20	GO:0007166: cell surface receptor signaling pathway	8.42E-04
21	GO:0009735: response to cytokinin	8.73E-04
22	GO:0009759: indole glucosinolate biosynthetic process	9.42E-04
23	GO:0042549: photosystem II stabilization	9.42E-04
24	GO:0010190: cytochrome b6f complex assembly	9.42E-04
25	GO:1901259: chloroplast rRNA processing	1.12E-03
26	GO:0042372: phylloquinone biosynthetic process	1.12E-03
27	GO:0009826: unidimensional cell growth	1.16E-03
28	GO:0009772: photosynthetic electron transport in photosystem II	1.31E-03
29	GO:0010196: nonphotochemical quenching	1.31E-03
30	GO:0050829: defense response to Gram-negative bacterium	1.31E-03
31	GO:0009690: cytokinin metabolic process	1.51E-03
32	GO:0019827: stem cell population maintenance	1.51E-03
33	GO:0006353: DNA-templated transcription, termination	1.51E-03
34	GO:0010114: response to red light	1.70E-03
35	GO:0022900: electron transport chain	1.72E-03
36	GO:0015979: photosynthesis	1.89E-03
37	GO:0006783: heme biosynthetic process	1.95E-03
38	GO:0010206: photosystem II repair	1.95E-03
39	GO:0034765: regulation of ion transmembrane transport	1.95E-03
40	GO:0010205: photoinhibition	2.18E-03
41	GO:0048829: root cap development	2.41E-03
42	GO:0006949: syncytium formation	2.41E-03
43	GO:0006782: protoporphyrinogen IX biosynthetic process	2.41E-03
44	GO:0048765: root hair cell differentiation	2.66E-03
45	GO:0019684: photosynthesis, light reaction	2.66E-03
46	GO:0002213: defense response to insect	2.92E-03
47	GO:0016024: CDP-diacylglycerol biosynthetic process	2.92E-03
48	GO:0042545: cell wall modification	3.12E-03
49	GO:0009718: anthocyanin-containing compound biosynthetic process	3.18E-03
50	GO:0009742: brassinosteroid mediated signaling pathway	3.41E-03
51	GO:0010143: cutin biosynthetic process	3.45E-03
52	GO:0010207: photosystem II assembly	3.45E-03
53	GO:0010030: positive regulation of seed germination	3.73E-03
54	GO:0000162: tryptophan biosynthetic process	4.02E-03
55	GO:0009845: seed germination	4.34E-03
56	GO:0003333: amino acid transmembrane transport	4.92E-03
57	GO:0016998: cell wall macromolecule catabolic process	4.92E-03
58	GO:0051260: protein homooligomerization	4.92E-03
59	GO:0030245: cellulose catabolic process	5.24E-03
60	GO:0010017: red or far-red light signaling pathway	5.24E-03
61	GO:0007623: circadian rhythm	5.53E-03
62	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	6.22E-03
63	GO:0080022: primary root development	6.57E-03
64	GO:0042631: cellular response to water deprivation	6.57E-03
65	GO:0042335: cuticle development	6.57E-03
66	GO:0009958: positive gravitropism	6.92E-03
67	GO:0042752: regulation of circadian rhythm	7.28E-03
68	GO:0000302: response to reactive oxygen species	8.01E-03
69	GO:0016032: viral process	8.39E-03
70	GO:0071805: potassium ion transmembrane transport	9.56E-03
71	GO:0051607: defense response to virus	9.96E-03
72	GO:0010027: thylakoid membrane organization	1.04E-02
73	GO:0010029: regulation of seed germination	1.08E-02
74	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.10E-02
75	GO:0010411: xyloglucan metabolic process	1.16E-02
76	GO:0010311: lateral root formation	1.29E-02
77	GO:0010119: regulation of stomatal movement	1.38E-02
78	GO:0006865: amino acid transport	1.43E-02
79	GO:0016051: carbohydrate biosynthetic process	1.48E-02
80	GO:0034599: cellular response to oxidative stress	1.52E-02
81	GO:0009753: response to jasmonic acid	1.68E-02
82	GO:0009926: auxin polar transport	1.77E-02
83	GO:0042546: cell wall biogenesis	1.82E-02
84	GO:0006855: drug transmembrane transport	1.97E-02
85	GO:0006357: regulation of transcription from RNA polymerase II promoter	2.08E-02
86	GO:0006468: protein phosphorylation	2.14E-02
87	GO:0009585: red, far-red light phototransduction	2.19E-02
88	GO:0009624: response to nematode	2.81E-02
89	GO:0006396: RNA processing	2.87E-02
90	GO:0045893: positive regulation of transcription, DNA-templated	3.20E-02
91	GO:0009058: biosynthetic process	3.42E-02
92	GO:0042744: hydrogen peroxide catabolic process	3.62E-02
93	GO:0040008: regulation of growth	4.01E-02
94	GO:0009451: RNA modification	4.21E-02
95	GO:0009739: response to gibberellin	4.49E-02
96	GO:0008380: RNA splicing	4.70E-02

Rank	GO Term	Adjusted P value
1	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
2	GO:0015269: calcium-activated potassium channel activity	0.00E+00
3	GO:0000156: phosphorelay response regulator activity	3.25E-05
4	GO:0010242: oxygen evolving activity	7.90E-05
5	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	7.90E-05
6	GO:0004853: uroporphyrinogen decarboxylase activity	7.90E-05
7	GO:0008909: isochorismate synthase activity	7.90E-05
8	GO:0016851: magnesium chelatase activity	4.58E-04
9	GO:0010011: auxin binding	6.09E-04
10	GO:0010328: auxin influx transmembrane transporter activity	6.09E-04
11	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	6.54E-04
12	GO:0019139: cytokinin dehydrogenase activity	7.72E-04
13	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	9.42E-04
14	GO:0015271: outward rectifier potassium channel activity	9.42E-04
15	GO:0004130: cytochrome-c peroxidase activity	9.42E-04
16	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	9.42E-04
17	GO:0004525: ribonuclease III activity	1.51E-03
18	GO:0005267: potassium channel activity	1.72E-03
19	GO:0015020: glucuronosyltransferase activity	2.41E-03
20	GO:0045330: aspartyl esterase activity	2.51E-03
21	GO:0047372: acylglycerol lipase activity	2.66E-03
22	GO:0030599: pectinesterase activity	3.03E-03
23	GO:0031072: heat shock protein binding	3.18E-03
24	GO:0008131: primary amine oxidase activity	3.45E-03
25	GO:0008266: poly(U) RNA binding	3.45E-03
26	GO:0005515: protein binding	4.34E-03
27	GO:0005216: ion channel activity	4.61E-03
28	GO:0046910: pectinesterase inhibitor activity	5.15E-03
29	GO:0030570: pectate lyase activity	5.56E-03
30	GO:0008810: cellulase activity	5.56E-03
31	GO:0003756: protein disulfide isomerase activity	5.89E-03
32	GO:0016762: xyloglucan:xyloglucosyl transferase activity	8.01E-03
33	GO:0016791: phosphatase activity	9.16E-03
34	GO:0016168: chlorophyll binding	1.08E-02
35	GO:0008375: acetylglucosaminyltransferase activity	1.12E-02
36	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.16E-02
37	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	1.27E-02
38	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.38E-02
39	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	1.42E-02
40	GO:0051537: 2 iron, 2 sulfur cluster binding	1.87E-02
41	GO:0043621: protein self-association	1.87E-02
42	GO:0015293: symporter activity	1.92E-02
43	GO:0008289: lipid binding	2.19E-02
44	GO:0003777: microtubule motor activity	2.35E-02
45	GO:0015171: amino acid transmembrane transporter activity	2.35E-02
46	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	2.52E-02
47	GO:0051082: unfolded protein binding	2.81E-02
48	GO:0016746: transferase activity, transferring acyl groups	2.87E-02
49	GO:0016301: kinase activity	3.10E-02
50	GO:0019843: rRNA binding	3.30E-02
51	GO:0043565: sequence-specific DNA binding	3.36E-02
52	GO:0016829: lyase activity	3.49E-02
53	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.68E-02
54	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
2	GO:0009534: chloroplast thylakoid	1.56E-11
3	GO:0009535: chloroplast thylakoid membrane	7.66E-11
4	GO:0009507: chloroplast	6.64E-07
5	GO:0005618: cell wall	2.03E-05
6	GO:0009543: chloroplast thylakoid lumen	3.87E-05
7	GO:0009515: granal stacked thylakoid	7.90E-05
8	GO:0030095: chloroplast photosystem II	1.65E-04
9	GO:0010007: magnesium chelatase complex	3.17E-04
10	GO:0042646: plastid nucleoid	4.58E-04
11	GO:0016363: nuclear matrix	1.12E-03
12	GO:0005576: extracellular region	1.13E-03
13	GO:0009579: thylakoid	1.30E-03
14	GO:0009986: cell surface	1.31E-03
15	GO:0031977: thylakoid lumen	1.57E-03
16	GO:0042644: chloroplast nucleoid	1.95E-03
17	GO:0005578: proteinaceous extracellular matrix	3.18E-03
18	GO:0009508: plastid chromosome	3.18E-03
19	GO:0009505: plant-type cell wall	4.07E-03
20	GO:0009654: photosystem II oxygen evolving complex	4.61E-03
21	GO:0016020: membrane	5.17E-03
22	GO:0009522: photosystem I	7.28E-03
23	GO:0009523: photosystem II	7.64E-03
24	GO:0019898: extrinsic component of membrane	7.64E-03
25	GO:0071944: cell periphery	8.77E-03
26	GO:0009941: chloroplast envelope	9.12E-03
27	GO:0009295: nucleoid	9.56E-03
28	GO:0030529: intracellular ribonucleoprotein complex	1.04E-02
29	GO:0009570: chloroplast stroma	1.62E-02
30	GO:0016021: integral component of membrane	1.63E-02
31	GO:0010287: plastoglobule	3.17E-02
32	GO:0005615: extracellular space	4.49E-02