Gene: AT4G10340
     

Gene description


TAIR ID: AT4G10340

Short description: light harvesting complex of photosystem II 5

Pathogen responsiveness: -0.34

General responsiveness: 2.50

Orthologous


Rice: No orthologous gene
Maize:

GRMZM2G149428  

Wheat: No orthologous gene

GO biological process


photosynthesis, light harvesting in photosystem I, response to far red light, protein-chromophore linkage, response to blue light, response to red light, photosystem II assembly, nonphotochemical quenching


GO cellular component


photosystem I, chloroplast stromal thylakoid, chloroplast thylakoid membrane, chloroplast, thylakoid membrane, chloroplast envelope, chloroplast thylakoid, light-harvesting complex, plastoglobule, membrane, thylakoid, integral component of membrane


GO molecular function


chlorophyll binding, metal ion binding, pigment binding, protein binding


Protein domain


PfamPF00504, Chlorophyll A-B binding protein

Metabolic pathway


Not involved in metabolic pathway


Transcriptional regulation


Regulator:
AT3G14230, AT1G24260

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 7

click to view PPI network

Differentially expressed condition


18 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE18978Col, WT, control 24 hCol, WT, PsmES4326 24 h-2.364.79E-07
GSE37269Ei2, WT, controlEi2, WT, TEV 21 d-1.521.11E-02
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 12 h-3.122.05E-10
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 8 h-1.563.53E-06
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 12 h-4.883.54E-13
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h-1.641.98E-06
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 8 h-3.318.24E-11
GSE5520Col, WT, control 10 hCol, WT, Cor- 10 h-1.621.31E-03
GSE5520Col, WT, control 7 hCol, WT, PstDC3000 7 h-1.872.69E-05
GSE56094Col, WT, control 10 hCol, WT, PstDC3000 10 h-2.902.53E-12
GSE56094Col, WT, control 10 hCol, WT, hrpA- 10 h-1.851.08E-05
GSE56094Col, WT, control 11 hCol, WT, PstDC3000 11 h-2.321.14E-08
GSE56094Col, WT, control 12 hCol, WT, PstDC3000 12 h-2.394.54E-09
GSE56094Col, WT, control 13 hCol, WT, PstDC3000 13 h-1.711.31E-05
GSE56094Col, WT, control 8 hCol, WT, PstDC3000 8 h-1.589.08E-05
GSE56094Col, WT, control 8 hCol, WT, hrpA- 8 h-1.841.09E-05
GSE56094Col, WT, control 9 hCol, WT, PstDC3000 9 h-2.102.71E-07
GSE56094Col, WT, control 9 hCol, WT, hrpA- 9 h-1.889.92E-06






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