co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G10340

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0005996: monosaccharide metabolic process	0.00E+00
2	GO:0016118: carotenoid catabolic process	0.00E+00
3	GO:0017038: protein import	0.00E+00
4	GO:0080114: positive regulation of glycine hydroxymethyltransferase activity	0.00E+00
5	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
6	GO:0015979: photosynthesis	2.57E-25
7	GO:0009768: photosynthesis, light harvesting in photosystem I	3.52E-17
8	GO:0018298: protein-chromophore linkage	2.88E-14
9	GO:0009769: photosynthesis, light harvesting in photosystem II	3.95E-10
10	GO:0009645: response to low light intensity stimulus	3.95E-10
11	GO:0009644: response to high light intensity	1.97E-09
12	GO:0009773: photosynthetic electron transport in photosystem I	6.58E-09
13	GO:0009416: response to light stimulus	3.05E-08
14	GO:0010196: nonphotochemical quenching	1.30E-07
15	GO:0010206: photosystem II repair	4.28E-07
16	GO:0042742: defense response to bacterium	4.80E-07
17	GO:0006094: gluconeogenesis	1.73E-06
18	GO:0006021: inositol biosynthetic process	4.57E-06
19	GO:0042549: photosystem II stabilization	1.18E-05
20	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	1.18E-05
21	GO:0009409: response to cold	1.67E-05
22	GO:0009772: photosynthetic electron transport in photosystem II	2.32E-05
23	GO:0006098: pentose-phosphate shunt	4.89E-05
24	GO:0006659: phosphatidylserine biosynthetic process	6.74E-05
25	GO:0080093: regulation of photorespiration	6.74E-05
26	GO:0031998: regulation of fatty acid beta-oxidation	6.74E-05
27	GO:0034337: RNA folding	6.74E-05
28	GO:0019684: photosynthesis, light reaction	8.50E-05
29	GO:0018119: peptidyl-cysteine S-nitrosylation	8.50E-05
30	GO:0009735: response to cytokinin	8.72E-05
31	GO:0019253: reductive pentose-phosphate cycle	1.31E-04
32	GO:0010207: photosystem II assembly	1.31E-04
33	GO:0035304: regulation of protein dephosphorylation	1.62E-04
34	GO:0016124: xanthophyll catabolic process	1.62E-04
35	GO:0097054: L-glutamate biosynthetic process	1.62E-04
36	GO:0006729: tetrahydrobiopterin biosynthetic process	1.62E-04
37	GO:0016121: carotene catabolic process	1.62E-04
38	GO:0030388: fructose 1,6-bisphosphate metabolic process	1.62E-04
39	GO:0006096: glycolytic process	2.10E-04
40	GO:0009269: response to desiccation	2.30E-04
41	GO:0006000: fructose metabolic process	2.75E-04
42	GO:0090391: granum assembly	2.75E-04
43	GO:0006537: glutamate biosynthetic process	3.98E-04
44	GO:0071484: cellular response to light intensity	3.98E-04
45	GO:0006814: sodium ion transport	4.10E-04
46	GO:0008654: phospholipid biosynthetic process	4.39E-04
47	GO:0010600: regulation of auxin biosynthetic process	5.32E-04
48	GO:0030104: water homeostasis	5.32E-04
49	GO:0010021: amylopectin biosynthetic process	5.32E-04
50	GO:0010109: regulation of photosynthesis	5.32E-04
51	GO:0019676: ammonia assimilation cycle	5.32E-04
52	GO:0015976: carbon utilization	5.32E-04
53	GO:0006109: regulation of carbohydrate metabolic process	5.32E-04
54	GO:0045727: positive regulation of translation	5.32E-04
55	GO:0032543: mitochondrial translation	6.73E-04
56	GO:0010236: plastoquinone biosynthetic process	6.73E-04
57	GO:0006097: glyoxylate cycle	6.73E-04
58	GO:0016123: xanthophyll biosynthetic process	6.73E-04
59	GO:0015995: chlorophyll biosynthetic process	7.86E-04
60	GO:0009635: response to herbicide	8.23E-04
61	GO:0050665: hydrogen peroxide biosynthetic process	8.23E-04
62	GO:0010218: response to far red light	9.50E-04
63	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	9.79E-04
64	GO:1901259: chloroplast rRNA processing	9.79E-04
65	GO:0010189: vitamin E biosynthetic process	9.79E-04
66	GO:0009854: oxidative photosynthetic carbon pathway	9.79E-04
67	GO:0071446: cellular response to salicylic acid stimulus	1.14E-03
68	GO:0010928: regulation of auxin mediated signaling pathway	1.32E-03
69	GO:0009642: response to light intensity	1.32E-03
70	GO:0006605: protein targeting	1.32E-03
71	GO:0010114: response to red light	1.38E-03
72	GO:0009744: response to sucrose	1.38E-03
73	GO:0032544: plastid translation	1.50E-03
74	GO:2000031: regulation of salicylic acid mediated signaling pathway	1.50E-03
75	GO:0006002: fructose 6-phosphate metabolic process	1.50E-03
76	GO:0090333: regulation of stomatal closure	1.69E-03
77	GO:0006754: ATP biosynthetic process	1.69E-03
78	GO:0009245: lipid A biosynthetic process	1.69E-03
79	GO:0009793: embryo development ending in seed dormancy	1.81E-03
80	GO:0010205: photoinhibition	1.89E-03
81	GO:0043085: positive regulation of catalytic activity	2.31E-03
82	GO:0000272: polysaccharide catabolic process	2.31E-03
83	GO:0005983: starch catabolic process	2.53E-03
84	GO:0045037: protein import into chloroplast stroma	2.53E-03
85	GO:0006108: malate metabolic process	2.76E-03
86	GO:0006006: glucose metabolic process	2.76E-03
87	GO:0009767: photosynthetic electron transport chain	2.76E-03
88	GO:0005986: sucrose biosynthetic process	2.76E-03
89	GO:0005985: sucrose metabolic process	3.23E-03
90	GO:0055114: oxidation-reduction process	3.99E-03
91	GO:0009693: ethylene biosynthetic process	4.81E-03
92	GO:0071215: cellular response to abscisic acid stimulus	4.81E-03
93	GO:0016117: carotenoid biosynthetic process	5.38E-03
94	GO:0042335: cuticle development	5.68E-03
95	GO:0042631: cellular response to water deprivation	5.68E-03
96	GO:0006662: glycerol ether metabolic process	5.98E-03
97	GO:0015986: ATP synthesis coupled proton transport	6.28E-03
98	GO:0009646: response to absence of light	6.28E-03
99	GO:0009791: post-embryonic development	6.60E-03
100	GO:0019252: starch biosynthetic process	6.60E-03
101	GO:0009658: chloroplast organization	6.91E-03
102	GO:0042254: ribosome biogenesis	7.04E-03
103	GO:0010090: trichome morphogenesis	7.57E-03
104	GO:0051607: defense response to virus	8.59E-03
105	GO:0010027: thylakoid membrane organization	8.93E-03
106	GO:0009627: systemic acquired resistance	9.65E-03
107	GO:0045454: cell redox homeostasis	1.03E-02
108	GO:0016311: dephosphorylation	1.04E-02
109	GO:0010119: regulation of stomatal movement	1.19E-02
110	GO:0009637: response to blue light	1.27E-02
111	GO:0009853: photorespiration	1.27E-02
112	GO:0034599: cellular response to oxidative stress	1.31E-02
113	GO:0006099: tricarboxylic acid cycle	1.31E-02
114	GO:0042542: response to hydrogen peroxide	1.48E-02
115	GO:0031347: regulation of defense response	1.74E-02
116	GO:0046686: response to cadmium ion	1.77E-02
117	GO:0006364: rRNA processing	1.88E-02
118	GO:0009585: red, far-red light phototransduction	1.88E-02
119	GO:0043086: negative regulation of catalytic activity	2.12E-02
120	GO:0009624: response to nematode	2.42E-02
121	GO:0006633: fatty acid biosynthetic process	3.33E-02
122	GO:0016036: cellular response to phosphate starvation	3.39E-02
123	GO:0007623: circadian rhythm	3.57E-02
124	GO:0010468: regulation of gene expression	4.04E-02

Rank	GO Term	Adjusted P value
1	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
2	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
3	GO:0046408: chlorophyll synthetase activity	0.00E+00
4	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
5	GO:0031409: pigment binding	1.27E-17
6	GO:0016168: chlorophyll binding	7.67E-17
7	GO:0004512: inositol-3-phosphate synthase activity	2.58E-07
8	GO:0008266: poly(U) RNA binding	2.16E-06
9	GO:0004332: fructose-bisphosphate aldolase activity	1.18E-05
10	GO:0010242: oxygen evolving activity	6.74E-05
11	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	6.74E-05
12	GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity	6.74E-05
13	GO:0016041: glutamate synthase (ferredoxin) activity	6.74E-05
14	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	6.74E-05
15	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	6.74E-05
16	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	1.62E-04
17	GO:0008967: phosphoglycolate phosphatase activity	1.62E-04
18	GO:0010291: carotene beta-ring hydroxylase activity	1.62E-04
19	GO:0010297: heteropolysaccharide binding	1.62E-04
20	GO:0033201: alpha-1,4-glucan synthase activity	1.62E-04
21	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	1.62E-04
22	GO:0015462: ATPase-coupled protein transmembrane transporter activity	2.75E-04
23	GO:0004324: ferredoxin-NADP+ reductase activity	2.75E-04
24	GO:0004373: glycogen (starch) synthase activity	2.75E-04
25	GO:0019843: rRNA binding	3.63E-04
26	GO:0016851: magnesium chelatase activity	3.98E-04
27	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	3.98E-04
28	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	3.98E-04
29	GO:0008508: bile acid:sodium symporter activity	3.98E-04
30	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	3.98E-04
31	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	3.98E-04
32	GO:0009011: starch synthase activity	5.32E-04
33	GO:0008891: glycolate oxidase activity	5.32E-04
34	GO:0003959: NADPH dehydrogenase activity	6.73E-04
35	GO:0051538: 3 iron, 4 sulfur cluster binding	6.73E-04
36	GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity	6.73E-04
37	GO:0031177: phosphopantetheine binding	8.23E-04
38	GO:0016615: malate dehydrogenase activity	8.23E-04
39	GO:0005515: protein binding	8.51E-04
40	GO:0046872: metal ion binding	8.93E-04
41	GO:0030060: L-malate dehydrogenase activity	9.79E-04
42	GO:0000035: acyl binding	9.79E-04
43	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	9.79E-04
44	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	1.32E-03
45	GO:0071949: FAD binding	1.69E-03
46	GO:0005509: calcium ion binding	1.85E-03
47	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	1.89E-03
48	GO:0030234: enzyme regulator activity	2.10E-03
49	GO:0008047: enzyme activator activity	2.10E-03
50	GO:0005315: inorganic phosphate transmembrane transporter activity	2.76E-03
51	GO:0004089: carbonate dehydratase activity	2.76E-03
52	GO:0031072: heat shock protein binding	2.76E-03
53	GO:0004857: enzyme inhibitor activity	3.73E-03
54	GO:0003756: protein disulfide isomerase activity	5.09E-03
55	GO:0008514: organic anion transmembrane transporter activity	5.09E-03
56	GO:0047134: protein-disulfide reductase activity	5.38E-03
57	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	5.98E-03
58	GO:0010181: FMN binding	6.28E-03
59	GO:0050662: coenzyme binding	6.28E-03
60	GO:0004791: thioredoxin-disulfide reductase activity	6.28E-03
61	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	7.57E-03
62	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	1.04E-02
63	GO:0003746: translation elongation factor activity	1.27E-02
64	GO:0003993: acid phosphatase activity	1.31E-02
65	GO:0050661: NADP binding	1.39E-02
66	GO:0016491: oxidoreductase activity	1.43E-02
67	GO:0005198: structural molecule activity	1.65E-02
68	GO:0015293: symporter activity	1.65E-02
69	GO:0051287: NAD binding	1.74E-02
70	GO:0051082: unfolded protein binding	2.42E-02
71	GO:0015035: protein disulfide oxidoreductase activity	2.47E-02
72	GO:0016787: hydrolase activity	2.64E-02
73	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.89E-02
74	GO:0015144: carbohydrate transmembrane transporter activity	3.22E-02
75	GO:0008565: protein transporter activity	3.22E-02
76	GO:0005351: sugar:proton symporter activity	3.51E-02
77	GO:0042802: identical protein binding	4.23E-02
78	GO:0008168: methyltransferase activity	4.73E-02

Rank	GO Term	Adjusted P value
1	GO:0042579: microbody	0.00E+00
2	GO:0009534: chloroplast thylakoid	3.11E-48
3	GO:0009535: chloroplast thylakoid membrane	3.05E-41
4	GO:0009507: chloroplast	1.41E-40
5	GO:0009579: thylakoid	3.24E-34
6	GO:0009941: chloroplast envelope	5.37E-33
7	GO:0010287: plastoglobule	2.44E-21
8	GO:0009570: chloroplast stroma	9.74E-21
9	GO:0009522: photosystem I	1.69E-20
10	GO:0030076: light-harvesting complex	2.44E-15
11	GO:0031977: thylakoid lumen	1.76E-13
12	GO:0009543: chloroplast thylakoid lumen	1.08E-11
13	GO:0009523: photosystem II	2.73E-11
14	GO:0030095: chloroplast photosystem II	9.80E-11
15	GO:0048046: apoplast	3.64E-10
16	GO:0009654: photosystem II oxygen evolving complex	4.87E-08
17	GO:0019898: extrinsic component of membrane	2.77E-07
18	GO:0016020: membrane	1.80E-06
19	GO:0009517: PSII associated light-harvesting complex II	4.57E-06
20	GO:0042651: thylakoid membrane	4.68E-06
21	GO:0010319: stromule	2.82E-05
22	GO:0009783: photosystem II antenna complex	6.74E-05
23	GO:0009515: granal stacked thylakoid	6.74E-05
24	GO:0009782: photosystem I antenna complex	6.74E-05
25	GO:0030093: chloroplast photosystem I	1.62E-04
26	GO:0043036: starch grain	1.62E-04
27	GO:0000427: plastid-encoded plastid RNA polymerase complex	1.62E-04
28	GO:0009706: chloroplast inner membrane	2.70E-04
29	GO:0010007: magnesium chelatase complex	2.75E-04
30	GO:0009544: chloroplast ATP synthase complex	5.32E-04
31	GO:0055035: plastid thylakoid membrane	6.73E-04
32	GO:0016021: integral component of membrane	7.62E-04
33	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	8.23E-04
34	GO:0031969: chloroplast membrane	1.22E-03
35	GO:0009538: photosystem I reaction center	1.32E-03
36	GO:0009501: amyloplast	1.32E-03
37	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.69E-03
38	GO:0005840: ribosome	2.24E-03
39	GO:0032040: small-subunit processome	2.53E-03
40	GO:0005623: cell	3.34E-03
41	GO:0015935: small ribosomal subunit	4.26E-03
42	GO:0005777: peroxisome	4.90E-03
43	GO:0009536: plastid	1.31E-02
44	GO:0022626: cytosolic ribosome	2.16E-02
45	GO:0005759: mitochondrial matrix	3.33E-02