gene detail

Gene description

TAIR ID: AT4G05180

Short description: photosystem II subunit Q-2

Pathogen responsiveness: -0.56

General responsiveness: 3.40

Orthologous

Rice:

OS07G0544800 OS02G0578400 OS07G0105600

Maize:

GRMZM5G804323

Wheat: No orthologous gene

GO biological process

photosynthesis

GO cellular component

chloroplast thylakoid membrane, chloroplast, chloroplast thylakoid, extrinsic component of membrane, chloroplast photosystem II, thylakoid, chloroplast thylakoid lumen, photosystem II oxygen evolving complex, chloroplast stroma, thylakoid lumen, apoplast

GO molecular function

calcium ion binding

Protein domain

Pfam	PF05757, Oxygen evolving enhancer protein 3 (PsbQ)

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath00195: Photosynthesis

Transcriptional regulation

Regulator:
AT5G07100, AT3G16857, AT4G16110, AT4G18770, AT5G22570, AT2G46130, AT3G09290, AT2G43010

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 6

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

15 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-2.48	1.65E-08
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-1.79	1.87E-03
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-2.94	4.28E-13
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-1.62	2.07E-09
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-2.29	8.26E-05
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	-2.38	2.98E-06
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	-2.72	5.01E-15
GSE56094	Col, WT, control 11 h	Col, WT, PstDC3000 11 h	-2.38	4.04E-12
GSE56094	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-2.20	7.17E-11
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	-2.12	1.79E-10
GSE56094	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	-1.53	8.22E-06
GSE56094	Col, WT, control 8 h	Col, WT, PstDC3000 8 h	-1.97	4.21E-09
GSE56094	Col, WT, control 8 h	Col, WT, hrpA- 8 h	-1.75	3.74E-07
GSE56094	Col, WT, control 9 h	Col, WT, PstDC3000 9 h	-2.11	6.82E-10
GSE56094	Col, WT, control 9 h	Col, WT, hrpA- 9 h	-1.77	3.84E-07