Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G05180

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1903508: positive regulation of nucleic acid-templated transcription0.00E+00
2GO:1903428: positive regulation of reactive oxygen species biosynthetic process0.00E+00
3GO:1901401: regulation of tetrapyrrole metabolic process0.00E+00
4GO:0033317: pantothenate biosynthetic process from valine0.00E+00
5GO:1905255: regulation of RNA binding transcription factor activity0.00E+00
6GO:0009768: photosynthesis, light harvesting in photosystem I3.05E-29
7GO:0015979: photosynthesis2.76E-27
8GO:0018298: protein-chromophore linkage1.09E-19
9GO:0009645: response to low light intensity stimulus2.67E-12
10GO:0010114: response to red light1.07E-10
11GO:0009644: response to high light intensity1.44E-10
12GO:0009769: photosynthesis, light harvesting in photosystem II1.07E-09
13GO:0010218: response to far red light1.68E-09
14GO:0009637: response to blue light2.67E-09
15GO:0019684: photosynthesis, light reaction2.26E-06
16GO:0009765: photosynthesis, light harvesting7.97E-06
17GO:0009416: response to light stimulus3.21E-05
18GO:0010196: nonphotochemical quenching3.89E-05
19GO:0015995: chlorophyll biosynthetic process8.49E-05
20GO:0015812: gamma-aminobutyric acid transport9.33E-05
21GO:0010207: photosystem II assembly2.08E-04
22GO:0009735: response to cytokinin2.13E-04
23GO:0035304: regulation of protein dephosphorylation2.20E-04
24GO:0080167: response to karrikin3.21E-04
25GO:0009409: response to cold3.49E-04
26GO:0009269: response to desiccation3.56E-04
27GO:0015940: pantothenate biosynthetic process3.67E-04
28GO:1902448: positive regulation of shade avoidance3.67E-04
29GO:0006598: polyamine catabolic process3.67E-04
30GO:0031936: negative regulation of chromatin silencing5.28E-04
31GO:0050482: arachidonic acid secretion5.28E-04
32GO:0030104: water homeostasis7.02E-04
33GO:0009755: hormone-mediated signaling pathway7.02E-04
34GO:2000306: positive regulation of photomorphogenesis7.02E-04
35GO:0010600: regulation of auxin biosynthetic process7.02E-04
36GO:1901657: glycosyl compound metabolic process8.05E-04
37GO:0010438: cellular response to sulfur starvation8.88E-04
38GO:0009635: response to herbicide1.08E-03
39GO:0042549: photosystem II stabilization1.08E-03
40GO:0045962: positive regulation of development, heterochronic1.08E-03
41GO:0071470: cellular response to osmotic stress1.29E-03
42GO:0010244: response to low fluence blue light stimulus by blue low-fluence system1.29E-03
43GO:0031930: mitochondria-nucleus signaling pathway1.29E-03
44GO:0010119: regulation of stomatal movement1.50E-03
45GO:0010161: red light signaling pathway1.51E-03
46GO:1900056: negative regulation of leaf senescence1.51E-03
47GO:0080111: DNA demethylation1.51E-03
48GO:0010439: regulation of glucosinolate biosynthetic process1.75E-03
49GO:0009704: de-etiolation1.75E-03
50GO:2000070: regulation of response to water deprivation1.75E-03
51GO:0006644: phospholipid metabolic process1.75E-03
52GO:0010928: regulation of auxin mediated signaling pathway1.75E-03
53GO:0009819: drought recovery1.75E-03
54GO:0010206: photosystem II repair2.25E-03
55GO:0090333: regulation of stomatal closure2.25E-03
56GO:0010205: photoinhibition2.52E-03
57GO:0030042: actin filament depolymerization2.52E-03
58GO:0010380: regulation of chlorophyll biosynthetic process2.52E-03
59GO:0006949: syncytium formation2.80E-03
60GO:0009682: induced systemic resistance3.09E-03
61GO:0010105: negative regulation of ethylene-activated signaling pathway3.38E-03
62GO:0009767: photosynthetic electron transport chain3.69E-03
63GO:0007015: actin filament organization4.01E-03
64GO:0090351: seedling development4.33E-03
65GO:0055114: oxidation-reduction process5.07E-03
66GO:0003333: amino acid transmembrane transport5.72E-03
67GO:0048511: rhythmic process5.72E-03
68GO:0010017: red or far-red light signaling pathway6.09E-03
69GO:0009625: response to insect6.47E-03
70GO:0071215: cellular response to abscisic acid stimulus6.47E-03
71GO:0045492: xylan biosynthetic process6.85E-03
72GO:0009739: response to gibberellin7.69E-03
73GO:0006814: sodium ion transport8.47E-03
74GO:0000302: response to reactive oxygen species9.33E-03
75GO:0009828: plant-type cell wall loosening1.07E-02
76GO:0009658: chloroplast organization1.07E-02
77GO:0016126: sterol biosynthetic process1.21E-02
78GO:0048573: photoperiodism, flowering1.36E-02
79GO:0016311: dephosphorylation1.41E-02
80GO:0044550: secondary metabolite biosynthetic process1.44E-02
81GO:0048481: plant ovule development1.46E-02
82GO:0007568: aging1.62E-02
83GO:0009910: negative regulation of flower development1.62E-02
84GO:0009867: jasmonic acid mediated signaling pathway1.73E-02
85GO:0034599: cellular response to oxidative stress1.78E-02
86GO:0032259: methylation1.87E-02
87GO:0006839: mitochondrial transport1.89E-02
88GO:0042542: response to hydrogen peroxide2.01E-02
89GO:0051707: response to other organism2.07E-02
90GO:0009640: photomorphogenesis2.07E-02
91GO:0009753: response to jasmonic acid2.10E-02
92GO:0008643: carbohydrate transport2.18E-02
93GO:0009965: leaf morphogenesis2.24E-02
94GO:0006812: cation transport2.43E-02
95GO:0009664: plant-type cell wall organization2.43E-02
96GO:0042538: hyperosmotic salinity response2.43E-02
97GO:0009585: red, far-red light phototransduction2.55E-02
98GO:0043086: negative regulation of catalytic activity2.88E-02
99GO:0005975: carbohydrate metabolic process2.95E-02
100GO:0009624: response to nematode3.28E-02
101GO:0009611: response to wounding3.55E-02
102GO:0055085: transmembrane transport4.39E-02
103GO:0007623: circadian rhythm4.84E-02
104GO:0010228: vegetative to reproductive phase transition of meristem5.00E-02
RankGO TermAdjusted P value
1GO:0080082: esculin beta-glucosidase activity0.00E+00
2GO:0015038: glutathione disulfide oxidoreductase activity0.00E+00
3GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity0.00E+00
4GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity0.00E+00
5GO:0047668: amygdalin beta-glucosidase activity0.00E+00
6GO:0004592: pantoate-beta-alanine ligase activity0.00E+00
7GO:0080083: beta-gentiobiose beta-glucosidase activity0.00E+00
8GO:0030504: inorganic diphosphate transmembrane transporter activity0.00E+00
9GO:0004567: beta-mannosidase activity0.00E+00
10GO:0031409: pigment binding2.95E-27
11GO:0016168: chlorophyll binding1.65E-22
12GO:0015185: gamma-aminobutyric acid transmembrane transporter activity9.33E-05
13GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor9.33E-05
14GO:0080079: cellobiose glucosidase activity9.33E-05
15GO:0010242: oxygen evolving activity9.33E-05
16GO:0008266: poly(U) RNA binding2.08E-04
17GO:0016630: protochlorophyllide reductase activity2.20E-04
18GO:0015180: L-alanine transmembrane transporter activity2.20E-04
19GO:0046592: polyamine oxidase activity3.67E-04
20GO:0010277: chlorophyllide a oxygenase [overall] activity3.67E-04
21GO:0015189: L-lysine transmembrane transporter activity5.28E-04
22GO:0015181: arginine transmembrane transporter activity5.28E-04
23GO:0046872: metal ion binding5.38E-04
24GO:0005313: L-glutamate transmembrane transporter activity7.02E-04
25GO:0004506: squalene monooxygenase activity7.02E-04
26GO:0015297: antiporter activity8.83E-04
27GO:0004623: phospholipase A2 activity8.88E-04
28GO:0005515: protein binding9.56E-04
29GO:0102483: scopolin beta-glucosidase activity1.18E-03
30GO:0003993: acid phosphatase activity1.71E-03
31GO:0008422: beta-glucosidase activity1.79E-03
32GO:0051537: 2 iron, 2 sulfur cluster binding2.27E-03
33GO:0047372: acylglycerol lipase activity3.09E-03
34GO:0004022: alcohol dehydrogenase (NAD) activity3.69E-03
35GO:0005315: inorganic phosphate transmembrane transporter activity3.69E-03
36GO:0005506: iron ion binding3.95E-03
37GO:0008131: primary amine oxidase activity4.01E-03
38GO:0003712: transcription cofactor activity4.33E-03
39GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen5.12E-03
40GO:0004707: MAP kinase activity5.72E-03
41GO:0008514: organic anion transmembrane transporter activity6.85E-03
42GO:0048038: quinone binding9.33E-03
43GO:0008168: methyltransferase activity1.03E-02
44GO:0005509: calcium ion binding1.58E-02
45GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen1.71E-02
46GO:0042393: histone binding1.89E-02
47GO:0015293: symporter activity2.24E-02
48GO:0005198: structural molecule activity2.24E-02
49GO:0015171: amino acid transmembrane transporter activity2.75E-02
50GO:0020037: heme binding3.09E-02
51GO:0016874: ligase activity3.15E-02
52GO:0022857: transmembrane transporter activity3.15E-02
53GO:0003779: actin binding3.21E-02
54GO:0015035: protein disulfide oxidoreductase activity3.35E-02
55GO:0004252: serine-type endopeptidase activity4.15E-02
56GO:0015144: carbohydrate transmembrane transporter activity4.38E-02
57GO:0016787: hydrolase activity4.50E-02
58GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds4.56E-02
59GO:0046910: pectinesterase inhibitor activity4.61E-02
60GO:0005351: sugar:proton symporter activity4.76E-02
61GO:0019825: oxygen binding4.92E-02
RankGO TermAdjusted P value
1GO:0009783: photosystem II antenna complex0.00E+00
2GO:0010287: plastoglobule3.47E-30
3GO:0009579: thylakoid6.43E-30
4GO:0009534: chloroplast thylakoid7.22E-30
5GO:0009535: chloroplast thylakoid membrane1.59E-29
6GO:0009522: photosystem I2.90E-24
7GO:0030076: light-harvesting complex3.49E-22
8GO:0009941: chloroplast envelope2.70E-21
9GO:0009538: photosystem I reaction center1.21E-14
10GO:0009523: photosystem II1.00E-12
11GO:0009507: chloroplast9.00E-11
12GO:0016020: membrane1.28E-08
13GO:0009517: PSII associated light-harvesting complex II2.15E-08
14GO:0016021: integral component of membrane3.88E-08
15GO:0042651: thylakoid membrane1.30E-07
16GO:0009543: chloroplast thylakoid lumen5.88E-05
17GO:0031977: thylakoid lumen1.78E-04
18GO:0030095: chloroplast photosystem II2.08E-04
19GO:0009654: photosystem II oxygen evolving complex3.24E-04
20GO:0019898: extrinsic component of membrane6.66E-04
21GO:0055035: plastid thylakoid membrane8.88E-04
22GO:0009533: chloroplast stromal thylakoid1.51E-03
23GO:0031966: mitochondrial membrane2.63E-03
24GO:0009706: chloroplast inner membrane3.99E-03
25GO:0031410: cytoplasmic vesicle6.09E-03
26GO:0015629: actin cytoskeleton6.47E-03
27GO:0009707: chloroplast outer membrane1.46E-02
28GO:0005777: peroxisome3.98E-02
Gene type



Gene DE type