gene detail

Gene description

TAIR ID: AT4G01690

Short description: Flavin containing amine oxidoreductase family

Pathogen responsiveness: -1.38

General responsiveness: 0.22

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G039396

Wheat: No orthologous gene

GO biological process

chlorophyll biosynthetic process, protoporphyrinogen IX biosynthetic process, porphyrin-containing compound biosynthetic process, oxidation-reduction process

GO cellular component

chloroplast envelope, chloroplast thylakoid, chloroplast

GO molecular function

protein binding, oxygen-dependent protoporphyrinogen oxidase activity

Protein domain

Pfam	PF01593, Flavin containing amine oxidoreductase

Metabolic pathway

PWY-5918: superpathay of heme biosynthesis from glutamate
HEME-BIOSYNTHESIS-II: heme biosynthesis from uroporphyrinogen-III I
CHLOROPHYLL-SYN: chlorophyllide a biosynthesis I (aerobic, light-dependent)
PWYQT-62: superpathway of proto- and siroheme biosynthesis

KEGG pathway

PATH:ath00860: Porphyrin and chlorophyll metabolism

Transcriptional regulation

Regulator:
AT5G13790, AT2G43010

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 3

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

2 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-1.78	1.68E-13
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-1.54	7.25E-06