Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G01690

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042371: vitamin K biosynthetic process0.00E+00
2GO:0006399: tRNA metabolic process0.00E+00
3GO:0006429: leucyl-tRNA aminoacylation0.00E+00
4GO:1901918: negative regulation of exoribonuclease activity0.00E+00
5GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
6GO:1901698: response to nitrogen compound0.00E+00
7GO:2000121: regulation of removal of superoxide radicals0.00E+00
8GO:0061635: regulation of protein complex stability0.00E+00
9GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
10GO:0016553: base conversion or substitution editing0.00E+00
11GO:0006412: translation1.54E-19
12GO:0032544: plastid translation6.78E-14
13GO:0042254: ribosome biogenesis3.64E-12
14GO:0015995: chlorophyll biosynthetic process3.40E-10
15GO:0015979: photosynthesis4.77E-10
16GO:0009735: response to cytokinin2.85E-09
17GO:0009658: chloroplast organization2.51E-07
18GO:0010027: thylakoid membrane organization5.73E-06
19GO:0006783: heme biosynthetic process2.46E-05
20GO:0006782: protoporphyrinogen IX biosynthetic process4.26E-05
21GO:0009773: photosynthetic electron transport in photosystem I5.40E-05
22GO:0045038: protein import into chloroplast thylakoid membrane1.25E-04
23GO:0006636: unsaturated fatty acid biosynthetic process1.39E-04
24GO:0042549: photosystem II stabilization1.80E-04
25GO:1901259: chloroplast rRNA processing2.44E-04
26GO:0042372: phylloquinone biosynthetic process2.44E-04
27GO:0009772: photosynthetic electron transport in photosystem II3.16E-04
28GO:0009793: embryo development ending in seed dormancy3.24E-04
29GO:1904966: positive regulation of vitamin E biosynthetic process3.60E-04
30GO:1904964: positive regulation of phytol biosynthetic process3.60E-04
31GO:1902458: positive regulation of stomatal opening3.60E-04
32GO:0034337: RNA folding3.60E-04
33GO:0071588: hydrogen peroxide mediated signaling pathway3.60E-04
34GO:0010729: positive regulation of hydrogen peroxide biosynthetic process3.60E-04
35GO:0006434: seryl-tRNA aminoacylation3.60E-04
36GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process3.60E-04
37GO:0043489: RNA stabilization3.60E-04
38GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process3.60E-04
39GO:0000413: protein peptidyl-prolyl isomerization3.78E-04
40GO:0071482: cellular response to light stimulus4.86E-04
41GO:0009657: plastid organization4.86E-04
42GO:0010206: photosystem II repair5.82E-04
43GO:0009409: response to cold6.39E-04
44GO:0010205: photoinhibition6.87E-04
45GO:1903426: regulation of reactive oxygen species biosynthetic process7.83E-04
46GO:0010275: NAD(P)H dehydrogenase complex assembly7.83E-04
47GO:0043039: tRNA aminoacylation7.83E-04
48GO:1902326: positive regulation of chlorophyll biosynthetic process7.83E-04
49GO:0034755: iron ion transmembrane transport7.83E-04
50GO:0006352: DNA-templated transcription, initiation9.22E-04
51GO:0015706: nitrate transport1.05E-03
52GO:0006006: glucose metabolic process1.19E-03
53GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.27E-03
54GO:0071705: nitrogen compound transport1.27E-03
55GO:0045493: xylan catabolic process1.27E-03
56GO:0006954: inflammatory response1.27E-03
57GO:0006013: mannose metabolic process1.27E-03
58GO:0006518: peptide metabolic process1.27E-03
59GO:0010207: photosystem II assembly1.34E-03
60GO:0010167: response to nitrate1.50E-03
61GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.83E-03
62GO:2001141: regulation of RNA biosynthetic process1.83E-03
63GO:1902476: chloride transmembrane transport1.83E-03
64GO:0051513: regulation of monopolar cell growth1.83E-03
65GO:0006241: CTP biosynthetic process1.83E-03
66GO:0080170: hydrogen peroxide transmembrane transport1.83E-03
67GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity1.83E-03
68GO:0009800: cinnamic acid biosynthetic process1.83E-03
69GO:0006165: nucleoside diphosphate phosphorylation1.83E-03
70GO:0006228: UTP biosynthetic process1.83E-03
71GO:0019344: cysteine biosynthetic process1.85E-03
72GO:0006418: tRNA aminoacylation for protein translation2.05E-03
73GO:0010114: response to red light2.27E-03
74GO:0071483: cellular response to blue light2.45E-03
75GO:0071249: cellular response to nitrate2.45E-03
76GO:0006183: GTP biosynthetic process2.45E-03
77GO:0030104: water homeostasis2.45E-03
78GO:0009306: protein secretion2.92E-03
79GO:0032543: mitochondrial translation3.14E-03
80GO:0006564: L-serine biosynthetic process3.14E-03
81GO:0010236: plastoquinone biosynthetic process3.14E-03
82GO:0009247: glycolipid biosynthetic process3.14E-03
83GO:0034052: positive regulation of plant-type hypersensitive response3.14E-03
84GO:0006655: phosphatidylglycerol biosynthetic process3.88E-03
85GO:0006559: L-phenylalanine catabolic process3.88E-03
86GO:0032973: amino acid export3.88E-03
87GO:0055114: oxidation-reduction process4.19E-03
88GO:0000302: response to reactive oxygen species4.55E-03
89GO:0009854: oxidative photosynthetic carbon pathway4.67E-03
90GO:0010019: chloroplast-nucleus signaling pathway4.67E-03
91GO:0010555: response to mannitol4.67E-03
92GO:0009955: adaxial/abaxial pattern specification4.67E-03
93GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)4.67E-03
94GO:0050829: defense response to Gram-negative bacterium5.52E-03
95GO:0009610: response to symbiotic fungus5.52E-03
96GO:0043090: amino acid import5.52E-03
97GO:0006614: SRP-dependent cotranslational protein targeting to membrane5.52E-03
98GO:0006821: chloride transport5.52E-03
99GO:0006605: protein targeting6.41E-03
100GO:0019375: galactolipid biosynthetic process6.41E-03
101GO:2000070: regulation of response to water deprivation6.41E-03
102GO:0009642: response to light intensity6.41E-03
103GO:0042255: ribosome assembly6.41E-03
104GO:0043068: positive regulation of programmed cell death6.41E-03
105GO:0017004: cytochrome complex assembly7.36E-03
106GO:0009699: phenylpropanoid biosynthetic process7.36E-03
107GO:0009932: cell tip growth7.36E-03
108GO:0022900: electron transport chain7.36E-03
109GO:0000373: Group II intron splicing8.35E-03
110GO:0009051: pentose-phosphate shunt, oxidative branch8.35E-03
111GO:0080144: amino acid homeostasis8.35E-03
112GO:0009790: embryo development8.46E-03
113GO:0018298: protein-chromophore linkage8.60E-03
114GO:0048481: plant ovule development8.60E-03
115GO:0042742: defense response to bacterium8.84E-03
116GO:0000160: phosphorelay signal transduction system9.04E-03
117GO:0006779: porphyrin-containing compound biosynthetic process9.38E-03
118GO:0009631: cold acclimation9.96E-03
119GO:0006535: cysteine biosynthetic process from serine1.05E-02
120GO:0009637: response to blue light1.09E-02
121GO:0034599: cellular response to oxidative stress1.14E-02
122GO:0006415: translational termination1.16E-02
123GO:0006879: cellular iron ion homeostasis1.16E-02
124GO:0019684: photosynthesis, light reaction1.16E-02
125GO:0009089: lysine biosynthetic process via diaminopimelate1.16E-02
126GO:0009073: aromatic amino acid family biosynthetic process1.16E-02
127GO:0006457: protein folding1.20E-02
128GO:0016024: CDP-diacylglycerol biosynthetic process1.28E-02
129GO:0045037: protein import into chloroplast stroma1.28E-02
130GO:0010628: positive regulation of gene expression1.40E-02
131GO:0019253: reductive pentose-phosphate cycle1.52E-02
132GO:0090351: seedling development1.65E-02
133GO:0009736: cytokinin-activated signaling pathway1.91E-02
134GO:0000027: ribosomal large subunit assembly1.92E-02
135GO:0009768: photosynthesis, light harvesting in photosystem I2.06E-02
136GO:0006417: regulation of translation2.11E-02
137GO:0048511: rhythmic process2.20E-02
138GO:0061077: chaperone-mediated protein folding2.20E-02
139GO:0031408: oxylipin biosynthetic process2.20E-02
140GO:0006730: one-carbon metabolic process2.35E-02
141GO:0007005: mitochondrion organization2.35E-02
142GO:0009814: defense response, incompatible interaction2.35E-02
143GO:0016226: iron-sulfur cluster assembly2.35E-02
144GO:0009411: response to UV2.50E-02
145GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.50E-02
146GO:0042545: cell wall modification2.64E-02
147GO:0006284: base-excision repair2.65E-02
148GO:0009561: megagametogenesis2.65E-02
149GO:0006396: RNA processing2.80E-02
150GO:0034220: ion transmembrane transport2.97E-02
151GO:0045454: cell redox homeostasis3.00E-02
152GO:0015986: ATP synthesis coupled proton transport3.30E-02
153GO:0042752: regulation of circadian rhythm3.30E-02
154GO:0002229: defense response to oomycetes3.64E-02
155GO:0032502: developmental process3.81E-02
156GO:0042744: hydrogen peroxide catabolic process3.87E-02
157GO:0030163: protein catabolic process3.99E-02
158GO:0006397: mRNA processing4.09E-02
159GO:0009567: double fertilization forming a zygote and endosperm4.17E-02
160GO:0006633: fatty acid biosynthetic process4.26E-02
161GO:0045490: pectin catabolic process4.68E-02
162GO:0009451: RNA modification4.78E-02
RankGO TermAdjusted P value
1GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
2GO:0004823: leucine-tRNA ligase activity0.00E+00
3GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
4GO:0015038: glutathione disulfide oxidoreductase activity0.00E+00
5GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
6GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
7GO:0005048: signal sequence binding0.00E+00
8GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
9GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
10GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
11GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
12GO:0008887: glycerate kinase activity0.00E+00
13GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
14GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
15GO:0004822: isoleucine-tRNA ligase activity0.00E+00
16GO:0004853: uroporphyrinogen decarboxylase activity0.00E+00
17GO:0019843: rRNA binding1.33E-34
18GO:0003735: structural constituent of ribosome2.33E-23
19GO:0003755: peptidyl-prolyl cis-trans isomerase activity9.63E-12
20GO:0005528: FK506 binding1.67E-07
21GO:0016851: magnesium chelatase activity2.39E-07
22GO:0002161: aminoacyl-tRNA editing activity2.05E-05
23GO:0051537: 2 iron, 2 sulfur cluster binding4.46E-05
24GO:0001053: plastid sigma factor activity8.00E-05
25GO:0016987: sigma factor activity8.00E-05
26GO:0004130: cytochrome-c peroxidase activity1.80E-04
27GO:0045485: omega-6 fatty acid desaturase activity3.60E-04
28GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity3.60E-04
29GO:0004828: serine-tRNA ligase activity3.60E-04
30GO:0004655: porphobilinogen synthase activity3.60E-04
31GO:0009671: nitrate:proton symporter activity3.60E-04
32GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water4.86E-04
33GO:0016722: oxidoreductase activity, oxidizing metal ions7.57E-04
34GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity7.83E-04
35GO:0008967: phosphoglycolate phosphatase activity7.83E-04
36GO:0042389: omega-3 fatty acid desaturase activity7.83E-04
37GO:0004326: tetrahydrofolylpolyglutamate synthase activity7.83E-04
38GO:0009977: proton motive force dependent protein transmembrane transporter activity7.83E-04
39GO:0004617: phosphoglycerate dehydrogenase activity7.83E-04
40GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity7.83E-04
41GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase7.83E-04
42GO:0031072: heat shock protein binding1.19E-03
43GO:0045548: phenylalanine ammonia-lyase activity1.27E-03
44GO:0004148: dihydrolipoyl dehydrogenase activity1.27E-03
45GO:0008266: poly(U) RNA binding1.34E-03
46GO:0004550: nucleoside diphosphate kinase activity1.83E-03
47GO:0008097: 5S rRNA binding1.83E-03
48GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.83E-03
49GO:0035250: UDP-galactosyltransferase activity1.83E-03
50GO:0016149: translation release factor activity, codon specific1.83E-03
51GO:0005253: anion channel activity2.45E-03
52GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity2.45E-03
53GO:0046556: alpha-L-arabinofuranosidase activity2.45E-03
54GO:0004659: prenyltransferase activity2.45E-03
55GO:0004345: glucose-6-phosphate dehydrogenase activity2.45E-03
56GO:0009044: xylan 1,4-beta-xylosidase activity2.45E-03
57GO:0043495: protein anchor2.45E-03
58GO:0003727: single-stranded RNA binding2.92E-03
59GO:0008725: DNA-3-methyladenine glycosylase activity3.14E-03
60GO:0016773: phosphotransferase activity, alcohol group as acceptor3.14E-03
61GO:0004040: amidase activity3.14E-03
62GO:0004812: aminoacyl-tRNA ligase activity3.16E-03
63GO:0009055: electron carrier activity3.17E-03
64GO:0016688: L-ascorbate peroxidase activity3.88E-03
65GO:0005247: voltage-gated chloride channel activity3.88E-03
66GO:0016208: AMP binding3.88E-03
67GO:0004559: alpha-mannosidase activity4.67E-03
68GO:0004124: cysteine synthase activity4.67E-03
69GO:0051920: peroxiredoxin activity4.67E-03
70GO:0000156: phosphorelay response regulator activity5.18E-03
71GO:0003723: RNA binding5.23E-03
72GO:0019899: enzyme binding5.52E-03
73GO:0016209: antioxidant activity6.41E-03
74GO:0008312: 7S RNA binding6.41E-03
75GO:0004033: aldo-keto reductase (NADP) activity6.41E-03
76GO:0016168: chlorophyll binding6.96E-03
77GO:0008236: serine-type peptidase activity8.18E-03
78GO:0003747: translation release factor activity8.35E-03
79GO:0015112: nitrate transmembrane transporter activity9.38E-03
80GO:0005381: iron ion transmembrane transporter activity9.38E-03
81GO:0008794: arsenate reductase (glutaredoxin) activity1.16E-02
82GO:0050661: NADP binding1.25E-02
83GO:0000049: tRNA binding1.28E-02
84GO:0016491: oxidoreductase activity1.51E-02
85GO:0051287: NAD binding1.71E-02
86GO:0031409: pigment binding1.78E-02
87GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.91E-02
88GO:0051536: iron-sulfur cluster binding1.92E-02
89GO:0003690: double-stranded DNA binding1.98E-02
90GO:0045330: aspartyl esterase activity2.11E-02
91GO:0004650: polygalacturonase activity2.48E-02
92GO:0022891: substrate-specific transmembrane transporter activity2.50E-02
93GO:0030599: pectinesterase activity2.56E-02
94GO:0003756: protein disulfide isomerase activity2.65E-02
95GO:0051082: unfolded protein binding2.72E-02
96GO:0015035: protein disulfide oxidoreductase activity2.80E-02
97GO:0046933: proton-transporting ATP synthase activity, rotational mechanism3.13E-02
98GO:0010181: FMN binding3.30E-02
99GO:0004252: serine-type endopeptidase activity3.77E-02
100GO:0005507: copper ion binding4.25E-02
101GO:0016597: amino acid binding4.54E-02
102GO:0015250: water channel activity4.72E-02
103GO:0003729: mRNA binding4.95E-02
RankGO TermAdjusted P value
1GO:0044391: ribosomal subunit0.00E+00
2GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
3GO:0009507: chloroplast1.02E-86
4GO:0009570: chloroplast stroma1.06E-56
5GO:0009941: chloroplast envelope8.94E-53
6GO:0009535: chloroplast thylakoid membrane1.27E-33
7GO:0009579: thylakoid7.20E-27
8GO:0009534: chloroplast thylakoid9.96E-23
9GO:0005840: ribosome2.84E-22
10GO:0009543: chloroplast thylakoid lumen1.30E-20
11GO:0031977: thylakoid lumen1.50E-15
12GO:0000311: plastid large ribosomal subunit2.95E-08
13GO:0010007: magnesium chelatase complex4.96E-08
14GO:0009654: photosystem II oxygen evolving complex8.79E-06
15GO:0009706: chloroplast inner membrane1.64E-05
16GO:0031969: chloroplast membrane5.47E-05
17GO:0000312: plastid small ribosomal subunit9.92E-05
18GO:0009536: plastid1.39E-04
19GO:0015934: large ribosomal subunit1.98E-04
20GO:0009533: chloroplast stromal thylakoid3.16E-04
21GO:0009547: plastid ribosome3.60E-04
22GO:0043674: columella3.60E-04
23GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex3.60E-04
24GO:0019898: extrinsic component of membrane5.03E-04
25GO:0009505: plant-type cell wall5.20E-04
26GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)5.82E-04
27GO:0009295: nucleoid7.57E-04
28GO:0042170: plastid membrane7.83E-04
29GO:0080085: signal recognition particle, chloroplast targeting7.83E-04
30GO:0016020: membrane1.13E-03
31GO:0033281: TAT protein transport complex1.27E-03
32GO:0009509: chromoplast1.27E-03
33GO:0042646: plastid nucleoid1.83E-03
34GO:0015935: small ribosomal subunit2.25E-03
35GO:0048046: apoplast3.24E-03
36GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)3.88E-03
37GO:0034707: chloride channel complex3.88E-03
38GO:0009523: photosystem II4.25E-03
39GO:0016363: nuclear matrix4.67E-03
40GO:0005762: mitochondrial large ribosomal subunit4.67E-03
41GO:0042807: central vacuole5.52E-03
42GO:0010319: stromule5.86E-03
43GO:0010287: plastoglobule6.48E-03
44GO:0030529: intracellular ribonucleoprotein complex6.58E-03
45GO:0022626: cytosolic ribosome7.10E-03
46GO:0005786: signal recognition particle, endoplasmic reticulum targeting7.36E-03
47GO:0009539: photosystem II reaction center7.36E-03
48GO:0005763: mitochondrial small ribosomal subunit8.35E-03
49GO:0032040: small-subunit processome1.28E-02
50GO:0009508: plastid chromosome1.40E-02
51GO:0022627: cytosolic small ribosomal subunit1.50E-02
52GO:0030095: chloroplast photosystem II1.52E-02
53GO:0030076: light-harvesting complex1.65E-02
54GO:0042651: thylakoid membrane2.06E-02
55GO:0005618: cell wall2.33E-02
56GO:0022625: cytosolic large ribosomal subunit2.55E-02
57GO:0009522: photosystem I3.30E-02
58GO:0071944: cell periphery3.99E-02
59GO:0005778: peroxisomal membrane4.35E-02
60GO:0009705: plant-type vacuole membrane4.68E-02
<
Gene type



Gene DE type