Gene: AT3G56170
     


Gene description


TAIR ID: AT3G56170

Short description: Ca-2+ dependent nuclease

Pathogen responsiveness: -0.08

General responsiveness: -0.22

GO biological process


RNA catabolic process, nucleic acid phosphodiester bond hydrolysis


GO cellular component


cytoplasm, nucleus


GO molecular function


nuclease activity


Protein domain


PfamPF00565, Staphylococcal nuclease homologue
SMARTSM00318, SNc

Metabolic pathway


Not involved in metabolic pathway


KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT3G14230

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 1

click to view PPI network

Differentially expressed condition


18 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE17464Laer, controlLaer, Alternaria brassicicola 3 d-1.622.57E-06
GSE17500Col, 35S:AFB1, control 0 hCol, 35S:AFB1, PstDC3000 24 h1.835.25E-05
GSE17500Col, WT, control 0 hCol, WT, PstDC3000 24 h2.373.01E-06
GSE17500Col, miR393, control 0 hCol, miR393, PstDC3000 24 h1.912.97E-05
GSE18978Col, WT, control 24 hCol, WT, PsmES4326 24 h2.831.85E-10
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 12 h2.295.57E-12
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 4 h1.535.67E-09
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 8 h1.986.21E-11
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 12 h1.994.53E-11
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 8 h2.627.25E-13
GSE5520Col, WT, control 10 hCol, WT, Cor- 10 h2.172.43E-04
GSE56094Col, WT, control 10 hCol, WT, PstDC3000 10 h2.001.44E-14
GSE56094Col, WT, control 12 hCol, WT, PstDC3000 12 h1.602.42E-10
GSE56094Col, WT, control 13 hCol, WT, PstDC3000 13 h1.682.76E-11
GSE56094Col, WT, control 9 hCol, WT, hrpA- 9 h1.521.46E-08
GSE5615Col, WT, water 4 hCol, WT, Flg22 4 h1.767.15E-07
GSE58954Col, WT, Psm AvrRpt2 0 hCol, WT, Psm AvrRpt2 6 h1.737.60E-03
GSE6556Col, gh3.5, controlCol, gh3.5, PstDC3000 AvrRpt2 48 h2.291.06E-05






Copyright © 2017 Ziding Zhang's Lab - China Agricultural University. All Rights Reserved.