Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G56170

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010793: regulation of mRNA export from nucleus0.00E+00
2GO:0033539: fatty acid beta-oxidation using acyl-CoA dehydrogenase0.00E+00
3GO:0032780: negative regulation of ATPase activity0.00E+00
4GO:0010111: glyoxysome organization0.00E+00
5GO:2001253: regulation of histone H3-K36 trimethylation0.00E+00
6GO:0009966: regulation of signal transduction2.88E-05
7GO:0015760: glucose-6-phosphate transport2.88E-05
8GO:0030198: extracellular matrix organization2.88E-05
9GO:0019395: fatty acid oxidation7.28E-05
10GO:0050684: regulation of mRNA processing7.28E-05
11GO:0015714: phosphoenolpyruvate transport1.27E-04
12GO:0032784: regulation of DNA-templated transcription, elongation1.27E-04
13GO:0035436: triose phosphate transmembrane transport1.27E-04
14GO:0015713: phosphoglycerate transport2.57E-04
15GO:0033320: UDP-D-xylose biosynthetic process2.57E-04
16GO:0006656: phosphatidylcholine biosynthetic process3.30E-04
17GO:0098719: sodium ion import across plasma membrane3.30E-04
18GO:0006014: D-ribose metabolic process4.06E-04
19GO:0042732: D-xylose metabolic process4.06E-04
20GO:0034389: lipid particle organization4.86E-04
21GO:0000209: protein polyubiquitination5.06E-04
22GO:0006333: chromatin assembly or disassembly5.68E-04
23GO:0006491: N-glycan processing6.55E-04
24GO:0030091: protein repair6.55E-04
25GO:0006972: hyperosmotic response7.44E-04
26GO:0048193: Golgi vesicle transport7.44E-04
27GO:0009051: pentose-phosphate shunt, oxidative branch8.35E-04
28GO:0051453: regulation of intracellular pH9.29E-04
29GO:0010152: pollen maturation1.23E-03
30GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process1.34E-03
31GO:0006006: glucose metabolic process1.34E-03
32GO:0010102: lateral root morphogenesis1.34E-03
33GO:0007033: vacuole organization1.56E-03
34GO:0009225: nucleotide-sugar metabolic process1.56E-03
35GO:0006406: mRNA export from nucleus1.79E-03
36GO:0009695: jasmonic acid biosynthetic process1.92E-03
37GO:0031408: oxylipin biosynthetic process2.04E-03
38GO:0030433: ubiquitin-dependent ERAD pathway2.17E-03
39GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.57E-03
40GO:0006814: sodium ion transport2.99E-03
41GO:0019252: starch biosynthetic process3.13E-03
42GO:0006891: intra-Golgi vesicle-mediated transport3.28E-03
43GO:0006635: fatty acid beta-oxidation3.28E-03
44GO:0006464: cellular protein modification process3.73E-03
45GO:0071805: potassium ion transmembrane transport3.89E-03
46GO:0009631: cold acclimation5.58E-03
47GO:0016051: carbohydrate biosynthetic process5.94E-03
48GO:0034599: cellular response to oxidative stress6.13E-03
49GO:0006897: endocytosis6.69E-03
50GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process8.09E-03
51GO:0006486: protein glycosylation8.71E-03
52GO:0010224: response to UV-B8.92E-03
53GO:0009553: embryo sac development1.09E-02
54GO:0009624: response to nematode1.12E-02
55GO:0009742: brassinosteroid mediated signaling pathway1.16E-02
56GO:0000398: mRNA splicing, via spliceosome1.23E-02
57GO:0009058: biosynthetic process1.36E-02
58GO:0006633: fatty acid biosynthetic process1.54E-02
59GO:0009409: response to cold2.07E-02
60GO:0006970: response to osmotic stress2.36E-02
61GO:0046686: response to cadmium ion2.38E-02
62GO:0006886: intracellular protein transport3.04E-02
63GO:0009793: embryo development ending in seed dormancy3.53E-02
64GO:0048364: root development3.55E-02
65GO:0009734: auxin-activated signaling pathway4.40E-02
66GO:0006508: proteolysis4.67E-02
RankGO TermAdjusted P value
1GO:0070191: methionine-R-sulfoxide reductase activity0.00E+00
2GO:0000384: first spliceosomal transesterification activity0.00E+00
3GO:0042030: ATPase inhibitor activity0.00E+00
4GO:0005201: extracellular matrix structural constituent0.00E+00
5GO:0004180: carboxypeptidase activity2.27E-07
6GO:0034450: ubiquitin-ubiquitin ligase activity2.88E-05
7GO:0004105: choline-phosphate cytidylyltransferase activity2.88E-05
8GO:0003988: acetyl-CoA C-acyltransferase activity7.28E-05
9GO:0015152: glucose-6-phosphate transmembrane transporter activity7.28E-05
10GO:0071917: triose-phosphate transmembrane transporter activity1.27E-04
11GO:0030527: structural constituent of chromatin1.89E-04
12GO:0004571: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity1.89E-04
13GO:0015120: phosphoglycerate transmembrane transporter activity2.57E-04
14GO:0004345: glucose-6-phosphate dehydrogenase activity2.57E-04
15GO:0008236: serine-type peptidase activity2.85E-04
16GO:0048040: UDP-glucuronate decarboxylase activity4.06E-04
17GO:0004559: alpha-mannosidase activity4.86E-04
18GO:0008113: peptide-methionine (S)-S-oxide reductase activity4.86E-04
19GO:0070403: NAD+ binding4.86E-04
20GO:0033743: peptide-methionine (R)-S-oxide reductase activity4.86E-04
21GO:0004747: ribokinase activity4.86E-04
22GO:0004869: cysteine-type endopeptidase inhibitor activity6.55E-04
23GO:0008865: fructokinase activity6.55E-04
24GO:0004713: protein tyrosine kinase activity1.03E-03
25GO:0015386: potassium:proton antiporter activity1.13E-03
26GO:0005315: inorganic phosphate transmembrane transporter activity1.34E-03
27GO:0019888: protein phosphatase regulator activity1.34E-03
28GO:0031624: ubiquitin conjugating enzyme binding1.45E-03
29GO:0015385: sodium:proton antiporter activity3.58E-03
30GO:0050897: cobalt ion binding5.58E-03
31GO:0004712: protein serine/threonine/tyrosine kinase activity6.31E-03
32GO:0050661: NADP binding6.50E-03
33GO:0016874: ligase activity1.07E-02
34GO:0008565: protein transporter activity1.48E-02
35GO:0015297: antiporter activity1.59E-02
36GO:0016491: oxidoreductase activity2.01E-02
37GO:0003682: chromatin binding2.33E-02
38GO:0050660: flavin adenine dinucleotide binding2.48E-02
39GO:0061630: ubiquitin protein ligase activity2.71E-02
40GO:0009055: electron carrier activity3.62E-02
RankGO TermAdjusted P value
1GO:0070274: RES complex0.00E+00
2GO:0000151: ubiquitin ligase complex3.00E-04
3GO:0030173: integral component of Golgi membrane4.86E-04
4GO:0009514: glyoxysome7.44E-04
5GO:0071011: precatalytic spliceosome9.29E-04
6GO:0030125: clathrin vesicle coat1.03E-03
7GO:0005686: U2 snRNP1.03E-03
8GO:0071013: catalytic step 2 spliceosome1.13E-03
9GO:0048471: perinuclear region of cytoplasm1.13E-03
10GO:0005783: endoplasmic reticulum1.75E-03
11GO:0005905: clathrin-coated pit2.04E-03
12GO:0005768: endosome2.18E-03
13GO:0000785: chromatin3.43E-03
14GO:0032580: Golgi cisterna membrane3.73E-03
15GO:0005635: nuclear envelope9.14E-03
16GO:0005829: cytosol9.40E-03
17GO:0016607: nuclear speck1.00E-02
18GO:0010008: endosome membrane1.00E-02
19GO:0005802: trans-Golgi network1.20E-02
20GO:0005654: nucleoplasm1.28E-02
21GO:0005759: mitochondrial matrix1.54E-02
22GO:0046658: anchored component of plasma membrane2.00E-02
23GO:0005773: vacuole2.06E-02
24GO:0000139: Golgi membrane2.07E-02
25GO:0005737: cytoplasm2.17E-02
26GO:0031969: chloroplast membrane2.61E-02
27GO:0016021: integral component of membrane4.76E-02
Gene type



Gene DE type