co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G56170

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0097250: mitochondrial respiratory chain supercomplex assembly	0.00E+00
2	GO:0042350: GDP-L-fucose biosynthetic process	2.30E-05
3	GO:0043609: regulation of carbon utilization	2.30E-05
4	GO:0042853: L-alanine catabolic process	5.89E-05
5	GO:0009156: ribonucleoside monophosphate biosynthetic process	5.89E-05
6	GO:0006597: spermine biosynthetic process	5.89E-05
7	GO:0031538: negative regulation of anthocyanin metabolic process	5.89E-05
8	GO:0042351: 'de novo' GDP-L-fucose biosynthetic process	1.04E-04
9	GO:0010253: UDP-rhamnose biosynthetic process	1.04E-04
10	GO:0071329: cellular response to sucrose stimulus	1.55E-04
11	GO:0009226: nucleotide-sugar biosynthetic process	1.55E-04
12	GO:0043967: histone H4 acetylation	1.55E-04
13	GO:0009165: nucleotide biosynthetic process	2.12E-04
14	GO:0042176: regulation of protein catabolic process	3.37E-04
15	GO:0010315: auxin efflux	3.37E-04
16	GO:0006596: polyamine biosynthetic process	3.37E-04
17	GO:0043966: histone H3 acetylation	4.04E-04
18	GO:0006368: transcription elongation from RNA polymerase II promoter	4.74E-04
19	GO:0010928: regulation of auxin mediated signaling pathway	5.46E-04
20	GO:0035265: organ growth	5.46E-04
21	GO:0015996: chlorophyll catabolic process	6.21E-04
22	GO:2000024: regulation of leaf development	6.98E-04
23	GO:0051555: flavonol biosynthetic process	8.59E-04
24	GO:0006913: nucleocytoplasmic transport	9.42E-04
25	GO:0072593: reactive oxygen species metabolic process	9.42E-04
26	GO:0046856: phosphatidylinositol dephosphorylation	9.42E-04
27	GO:0006511: ubiquitin-dependent protein catabolic process	1.06E-03
28	GO:0034605: cellular response to heat	1.20E-03
29	GO:0009225: nucleotide-sugar metabolic process	1.30E-03
30	GO:0009116: nucleoside metabolic process	1.49E-03
31	GO:0042127: regulation of cell proliferation	2.02E-03
32	GO:0008284: positive regulation of cell proliferation	2.13E-03
33	GO:0010118: stomatal movement	2.24E-03
34	GO:0030163: protein catabolic process	2.96E-03
35	GO:0001666: response to hypoxia	3.48E-03
36	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	3.62E-03
37	GO:0009737: response to abscisic acid	4.51E-03
38	GO:0009738: abscisic acid-activated signaling pathway	5.49E-03
39	GO:0008283: cell proliferation	5.84E-03
40	GO:0051603: proteolysis involved in cellular protein catabolic process	7.35E-03
41	GO:0009651: response to salt stress	8.03E-03
42	GO:0009058: biosynthetic process	1.11E-02
43	GO:0009414: response to water deprivation	1.12E-02
44	GO:0071555: cell wall organization	1.15E-02
45	GO:0010150: leaf senescence	1.35E-02
46	GO:0006470: protein dephosphorylation	1.48E-02
47	GO:0009617: response to bacterium	1.53E-02
48	GO:0009658: chloroplast organization	1.84E-02
49	GO:0007275: multicellular organism development	2.27E-02
50	GO:0009753: response to jasmonic acid	2.97E-02
51	GO:0006357: regulation of transcription from RNA polymerase II promoter	3.45E-02
52	GO:0006508: proteolysis	3.54E-02
53	GO:0009734: auxin-activated signaling pathway	3.61E-02
54	GO:0045893: positive regulation of transcription, DNA-templated	4.69E-02

Rank	GO Term	Adjusted P value
1	GO:0102293: pheophytinase b activity	2.30E-05
2	GO:0043813: phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity	2.30E-05
3	GO:0016768: spermine synthase activity	2.30E-05
4	GO:0050577: GDP-L-fucose synthase activity	2.30E-05
5	GO:0004298: threonine-type endopeptidase activity	5.09E-05
6	GO:0050377: UDP-glucose 4,6-dehydratase activity	5.89E-05
7	GO:0047746: chlorophyllase activity	5.89E-05
8	GO:0008460: dTDP-glucose 4,6-dehydratase activity	5.89E-05
9	GO:0004766: spermidine synthase activity	5.89E-05
10	GO:0010280: UDP-L-rhamnose synthase activity	5.89E-05
11	GO:0016853: isomerase activity	9.77E-05
12	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	1.55E-04
13	GO:0004749: ribose phosphate diphosphokinase activity	1.55E-04
14	GO:0000993: RNA polymerase II core binding	2.12E-04
15	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	3.37E-04
16	GO:0030234: enzyme regulator activity	8.59E-04
17	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	1.03E-03
18	GO:0004175: endopeptidase activity	1.20E-03
19	GO:0008408: 3'-5' exonuclease activity	1.70E-03
20	GO:0004402: histone acetyltransferase activity	2.24E-03
21	GO:0004527: exonuclease activity	2.36E-03
22	GO:0050662: coenzyme binding	2.48E-03
23	GO:0005096: GTPase activator activity	4.32E-03
24	GO:0004222: metalloendopeptidase activity	4.46E-03
25	GO:0016887: ATPase activity	4.95E-03
26	GO:0004650: polygalacturonase activity	8.61E-03
27	GO:0016829: lyase activity	1.14E-02
28	GO:0030170: pyridoxal phosphate binding	1.16E-02
29	GO:0003824: catalytic activity	1.26E-02
30	GO:0016491: oxidoreductase activity	1.52E-02
31	GO:0000287: magnesium ion binding	1.81E-02
32	GO:0008233: peptidase activity	2.11E-02
33	GO:0004722: protein serine/threonine phosphatase activity	2.60E-02
34	GO:0003676: nucleic acid binding	4.73E-02
35	GO:0016740: transferase activity	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0033106: cis-Golgi network membrane	0.00E+00
2	GO:0000502: proteasome complex	3.71E-07
3	GO:0008023: transcription elongation factor complex	2.30E-05
4	GO:0005839: proteasome core complex	5.09E-05
5	GO:0033588: Elongator holoenzyme complex	1.55E-04
6	GO:0000813: ESCRT I complex	2.73E-04
7	GO:0000123: histone acetyltransferase complex	4.74E-04
8	GO:0019773: proteasome core complex, alpha-subunit complex	6.21E-04
9	GO:0008541: proteasome regulatory particle, lid subcomplex	9.42E-04
10	GO:0031965: nuclear membrane	2.60E-03
11	GO:0005819: spindle	5.21E-03
12	GO:0005635: nuclear envelope	7.52E-03
13	GO:0005737: cytoplasm	8.99E-03
14	GO:0009524: phragmoplast	1.11E-02
15	GO:0031969: chloroplast membrane	2.14E-02
16	GO:0005743: mitochondrial inner membrane	2.68E-02
17	GO:0005774: vacuolar membrane	3.99E-02