Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G54810

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006971: hypotonic response0.00E+00
2GO:0034484: raffinose catabolic process0.00E+00
3GO:0006792: regulation of sulfur utilization0.00E+00
4GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)0.00E+00
5GO:0010200: response to chitin1.18E-08
6GO:0010438: cellular response to sulfur starvation7.74E-08
7GO:2000022: regulation of jasmonic acid mediated signaling pathway2.01E-05
8GO:0030162: regulation of proteolysis6.75E-05
9GO:0010439: regulation of glucosinolate biosynthetic process6.75E-05
10GO:0033481: galacturonate biosynthetic process1.12E-04
11GO:0080164: regulation of nitric oxide metabolic process1.12E-04
12GO:0055063: sulfate ion homeostasis1.12E-04
13GO:0046500: S-adenosylmethionine metabolic process1.12E-04
14GO:0050691: regulation of defense response to virus by host1.12E-04
15GO:0009751: response to salicylic acid1.29E-04
16GO:0051592: response to calcium ion2.61E-04
17GO:0080185: effector dependent induction by symbiont of host immune response2.61E-04
18GO:0071712: ER-associated misfolded protein catabolic process2.61E-04
19GO:2000693: positive regulation of seed maturation2.61E-04
20GO:0071497: cellular response to freezing2.61E-04
21GO:0031347: regulation of defense response3.58E-04
22GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process3.58E-04
23GO:0019419: sulfate reduction4.32E-04
24GO:0010581: regulation of starch biosynthetic process4.32E-04
25GO:0080168: abscisic acid transport4.32E-04
26GO:0045893: positive regulation of transcription, DNA-templated5.17E-04
27GO:0040007: growth5.39E-04
28GO:0019722: calcium-mediated signaling5.85E-04
29GO:1902358: sulfate transmembrane transport6.19E-04
30GO:0045454: cell redox homeostasis6.23E-04
31GO:0009741: response to brassinosteroid7.34E-04
32GO:0046345: abscisic acid catabolic process8.23E-04
33GO:0002229: defense response to oomycetes8.98E-04
34GO:0006544: glycine metabolic process1.04E-03
35GO:0007267: cell-cell signaling1.14E-03
36GO:0006563: L-serine metabolic process1.27E-03
37GO:0009267: cellular response to starvation1.27E-03
38GO:1902456: regulation of stomatal opening1.27E-03
39GO:0047484: regulation of response to osmotic stress1.27E-03
40GO:0009414: response to water deprivation1.33E-03
41GO:0009788: negative regulation of abscisic acid-activated signaling pathway1.35E-03
42GO:0009737: response to abscisic acid1.42E-03
43GO:0010411: xyloglucan metabolic process1.49E-03
44GO:0048573: photoperiodism, flowering1.49E-03
45GO:0009612: response to mechanical stimulus1.52E-03
46GO:0010038: response to metal ion1.78E-03
47GO:0050829: defense response to Gram-negative bacterium1.78E-03
48GO:0009738: abscisic acid-activated signaling pathway1.92E-03
49GO:0035265: organ growth2.06E-03
50GO:2000070: regulation of response to water deprivation2.06E-03
51GO:0009658: chloroplast organization2.19E-03
52GO:0044030: regulation of DNA methylation2.35E-03
53GO:2000031: regulation of salicylic acid mediated signaling pathway2.35E-03
54GO:0010099: regulation of photomorphogenesis2.35E-03
55GO:0048574: long-day photoperiodism, flowering2.35E-03
56GO:0042542: response to hydrogen peroxide2.57E-03
57GO:0019432: triglyceride biosynthetic process2.66E-03
58GO:0051865: protein autoubiquitination2.66E-03
59GO:0042546: cell wall biogenesis2.78E-03
60GO:0035999: tetrahydrofolate interconversion2.97E-03
61GO:0043069: negative regulation of programmed cell death3.30E-03
62GO:0051555: flavonol biosynthetic process3.30E-03
63GO:0000103: sulfate assimilation3.30E-03
64GO:0010015: root morphogenesis3.65E-03
65GO:0000038: very long-chain fatty acid metabolic process3.65E-03
66GO:1903507: negative regulation of nucleic acid-templated transcription3.65E-03
67GO:0000272: polysaccharide catabolic process3.65E-03
68GO:0016024: CDP-diacylglycerol biosynthetic process4.00E-03
69GO:0016925: protein sumoylation4.00E-03
70GO:0006355: regulation of transcription, DNA-templated4.27E-03
71GO:0018107: peptidyl-threonine phosphorylation4.36E-03
72GO:0009718: anthocyanin-containing compound biosynthetic process4.36E-03
73GO:0010540: basipetal auxin transport4.74E-03
74GO:0034605: cellular response to heat4.74E-03
75GO:0010143: cutin biosynthetic process4.74E-03
76GO:0002237: response to molecule of bacterial origin4.74E-03
77GO:0009225: nucleotide-sugar metabolic process5.13E-03
78GO:0005985: sucrose metabolic process5.13E-03
79GO:0009753: response to jasmonic acid5.15E-03
80GO:0034976: response to endoplasmic reticulum stress5.52E-03
81GO:0006636: unsaturated fatty acid biosynthetic process5.52E-03
82GO:0042742: defense response to bacterium5.89E-03
83GO:2000377: regulation of reactive oxygen species metabolic process5.93E-03
84GO:0006487: protein N-linked glycosylation5.93E-03
85GO:0019344: cysteine biosynthetic process5.93E-03
86GO:0009873: ethylene-activated signaling pathway6.51E-03
87GO:0006357: regulation of transcription from RNA polymerase II promoter6.73E-03
88GO:0010118: stomatal movement9.08E-03
89GO:0048653: anther development9.08E-03
90GO:0000271: polysaccharide biosynthetic process9.08E-03
91GO:0010268: brassinosteroid homeostasis9.57E-03
92GO:0045489: pectin biosynthetic process9.57E-03
93GO:0016567: protein ubiquitination9.73E-03
94GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process9.85E-03
95GO:0009646: response to absence of light1.01E-02
96GO:0035556: intracellular signal transduction1.05E-02
97GO:0006351: transcription, DNA-templated1.10E-02
98GO:0016132: brassinosteroid biosynthetic process1.11E-02
99GO:0048510: regulation of timing of transition from vegetative to reproductive phase1.11E-02
100GO:0009651: response to salt stress1.15E-02
101GO:0009828: plant-type cell wall loosening1.27E-02
102GO:0016125: sterol metabolic process1.27E-02
103GO:0009639: response to red or far red light1.27E-02
104GO:0001666: response to hypoxia1.44E-02
105GO:0006970: response to osmotic stress1.47E-02
106GO:0009816: defense response to bacterium, incompatible interaction1.50E-02
107GO:0009627: systemic acquired resistance1.56E-02
108GO:0009723: response to ethylene1.58E-02
109GO:0048366: leaf development1.61E-02
110GO:0016311: dephosphorylation1.68E-02
111GO:0016049: cell growth1.68E-02
112GO:0009817: defense response to fungus, incompatible interaction1.74E-02
113GO:0007165: signal transduction1.78E-02
114GO:0046777: protein autophosphorylation1.81E-02
115GO:0048527: lateral root development1.93E-02
116GO:0010119: regulation of stomatal movement1.93E-02
117GO:0045087: innate immune response2.06E-02
118GO:0016051: carbohydrate biosynthetic process2.06E-02
119GO:0071555: cell wall organization2.38E-02
120GO:0030154: cell differentiation2.65E-02
121GO:0006855: drug transmembrane transport2.75E-02
122GO:0009733: response to auxin2.75E-02
123GO:0009585: red, far-red light phototransduction3.04E-02
124GO:0009909: regulation of flower development3.27E-02
125GO:0009409: response to cold3.47E-02
126GO:0018105: peptidyl-serine phosphorylation3.99E-02
127GO:0009742: brassinosteroid mediated signaling pathway4.08E-02
128GO:0009611: response to wounding4.52E-02
RankGO TermAdjusted P value
1GO:0047890: flavanone 4-reductase activity0.00E+00
2GO:0045552: dihydrokaempferol 4-reductase activity0.00E+00
3GO:0043565: sequence-specific DNA binding5.29E-05
4GO:0004328: formamidase activity1.12E-04
5GO:1901149: salicylic acid binding1.12E-04
6GO:0080132: fatty acid alpha-hydroxylase activity1.12E-04
7GO:0090440: abscisic acid transporter activity1.12E-04
8GO:0044390: ubiquitin-like protein conjugating enzyme binding2.61E-04
9GO:0033741: adenylyl-sulfate reductase (glutathione) activity2.61E-04
10GO:0009973: adenylyl-sulfate reductase activity2.61E-04
11GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity2.61E-04
12GO:0052692: raffinose alpha-galactosidase activity4.32E-04
13GO:0010295: (+)-abscisic acid 8'-hydroxylase activity4.32E-04
14GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity6.19E-04
15GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides6.19E-04
16GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway8.23E-04
17GO:0050378: UDP-glucuronate 4-epimerase activity8.23E-04
18GO:0016762: xyloglucan:xyloglucosyl transferase activity8.98E-04
19GO:0004372: glycine hydroxymethyltransferase activity1.04E-03
20GO:0031386: protein tag1.04E-03
21GO:0010427: abscisic acid binding1.27E-03
22GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity1.27E-03
23GO:0080046: quercetin 4'-O-glucosyltransferase activity1.27E-03
24GO:0004366: glycerol-3-phosphate O-acyltransferase activity1.27E-03
25GO:0044212: transcription regulatory region DNA binding1.39E-03
26GO:0016798: hydrolase activity, acting on glycosyl bonds1.49E-03
27GO:0016161: beta-amylase activity1.52E-03
28GO:0008271: secondary active sulfate transmembrane transporter activity2.35E-03
29GO:0004842: ubiquitin-protein transferase activity2.46E-03
30GO:0004864: protein phosphatase inhibitor activity3.30E-03
31GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting3.61E-03
32GO:0031625: ubiquitin protein ligase binding3.97E-03
33GO:0015116: sulfate transmembrane transporter activity4.00E-03
34GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding4.14E-03
35GO:0003700: transcription factor activity, sequence-specific DNA binding4.66E-03
36GO:0003712: transcription cofactor activity5.13E-03
37GO:0003714: transcription corepressor activity5.93E-03
38GO:0035251: UDP-glucosyltransferase activity6.78E-03
39GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity7.22E-03
40GO:0003756: protein disulfide isomerase activity8.13E-03
41GO:0004402: histone acetyltransferase activity9.08E-03
42GO:0050662: coenzyme binding1.01E-02
43GO:0004872: receptor activity1.06E-02
44GO:0016757: transferase activity, transferring glycosyl groups1.18E-02
45GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor1.22E-02
46GO:0016791: phosphatase activity1.27E-02
47GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity1.33E-02
48GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.39E-02
49GO:0043531: ADP binding1.50E-02
50GO:0008375: acetylglucosaminyltransferase activity1.56E-02
51GO:0009931: calcium-dependent protein serine/threonine kinase activity1.56E-02
52GO:0004806: triglyceride lipase activity1.62E-02
53GO:0015238: drug transmembrane transporter activity1.80E-02
54GO:0004871: signal transducer activity2.13E-02
55GO:0004674: protein serine/threonine kinase activity2.22E-02
56GO:0015293: symporter activity2.67E-02
57GO:0003824: catalytic activity2.68E-02
58GO:0045735: nutrient reservoir activity3.43E-02
59GO:0080043: quercetin 3-O-glucosyltransferase activity3.67E-02
60GO:0080044: quercetin 7-O-glucosyltransferase activity3.67E-02
61GO:0004672: protein kinase activity3.84E-02
62GO:0015035: protein disulfide oxidoreductase activity3.99E-02
63GO:0016746: transferase activity, transferring acyl groups3.99E-02
64GO:0016758: transferase activity, transferring hexosyl groups4.50E-02
65GO:0030170: pyridoxal phosphate binding4.94E-02
RankGO TermAdjusted P value
1GO:0090568: nuclear transcriptional repressor complex0.00E+00
2GO:0042406: extrinsic component of endoplasmic reticulum membrane4.32E-04
3GO:0036513: Derlin-1 retrotranslocation complex6.19E-04
4GO:0019005: SCF ubiquitin ligase complex1.65E-03
5GO:0048046: apoplast4.09E-03
6GO:0005794: Golgi apparatus6.12E-03
7GO:0015629: actin cytoskeleton7.67E-03
8GO:0009505: plant-type cell wall8.30E-03
9GO:0005770: late endosome9.57E-03
10GO:0005615: extracellular space9.85E-03
11GO:0032580: Golgi cisterna membrane1.27E-02
12GO:0031902: late endosome membrane2.32E-02
13GO:0005618: cell wall4.57E-02
14GO:0009506: plasmodesma4.76E-02
Gene type



Gene DE type