Gene: AT3G53190
Gene description
TAIR ID: AT3G53190
Short description: Pectin lyase-like superfamily protein
Pathogen responsiveness: -0.16
General responsiveness: -0.89
GO biological process
pectin catabolic process
GO cellular component
anchored component of membrane, plasma membrane
GO molecular function
pectate lyase activity, lyase activity, metal ion binding
Metabolic pathway
Not involved in metabolic pathway
Protein-protein interaction network
The number of partners (degree) is: 16 (Top20%)
click to view PPI networkCoexpression network
Differentially expressed condition 
22 conditions
| Series | Control | Treatment | Log2FC | Adj. P value |
|---|---|---|---|---|
| GSE17500 | Col, 35S:AFB1, control 0 h | Col, 35S:AFB1, PstDC3000 24 h | -1.91 | 6.62E-05 |
| GSE17500 | Col, WT, control 0 h | Col, WT, PstDC3000 24 h | -1.95 | 2.90E-05 |
| GSE17500 | Col, miR393, control 0 h | Col, miR393, PstDC3000 24 h | -1.96 | 4.28E-05 |
| GSE18978 | Col, WT, control 24 h | Col, WT, PsmES4326 24 h | -2.15 | 1.80E-10 |
| GSE37269 | Ei2, WT, control | Ei2, WT, TEV 21 d | -1.75 | 1.52E-02 |
| GSE37269 | St0, WT, control | St0, WT, TEV 21 d | 1.52 | 2.34E-02 |
| GSE40544 | Col, WT, control | Col, WT, PstDC3000 AvrRpt2 | -2.87 | 1.62E-06 |
| GSE40544 | Col, WT, control | Col, WT, PstDC3000 EV | -2.27 | 1.45E-05 |
| GSE40544 | Col, Sid2, control | Col, Sid2, PstDC3000 AvrRpt2 | -2.62 | 4.34E-06 |
| GSE40544 | Col, Sid2, control | Col, Sid2, PstDC3000 EV | -1.53 | 1.85E-03 |
| GSE45212 | Col, WT, PstDC3000 AvrRpt2 0 h | Col, WT, PstDC3000 AvrRpt2 12 h | -2.22 | 3.01E-11 |
| GSE45212 | Col, WT, PstDC3000 AvrRpt2 0 h | Col, WT, PstDC3000 AvrRpt2 8 h | -1.83 | 6.57E-10 |
| GSE45212 | Col, med14, PstDC3000 AvrRpt2 0 h | Col, med14, PstDC3000 AvrRpt2 12 h | -1.98 | 1.83E-10 |
| GSE45212 | Col, med14, PstDC3000 AvrRpt2 0 h | Col, med14, PstDC3000 AvrRpt2 4 h | -1.92 | 3.14E-10 |
| GSE45212 | Col, med14, PstDC3000 AvrRpt2 0 h | Col, med14, PstDC3000 AvrRpt2 8 h | -2.38 | 1.06E-11 |
| GSE45214 | Col, med16, PstDC3000 AvrRpt2 0 h | Col, med16, PstDC3000 AvrRpt2 4 h | -1.97 | 5.45E-11 |
| GSE50526 | Col, WT, mock 24 h | Col, WT, A. brassicicola 24 h | -2.39 | 2.97E-03 |
| GSE50526 | Col, WT, mock 9 h | Col, WT, A. brassicicola 9 h | -1.80 | 1.17E-02 |
| GSE56094 | Col, WT, control 10 h | Col, WT, PstDC3000 10 h | -1.76 | 1.93E-09 |
| GSE56094 | Col, WT, control 11 h | Col, WT, PstDC3000 11 h | -1.50 | 2.78E-07 |
| GSE56094 | Col, WT, control 12 h | Col, WT, PstDC3000 12 h | -1.57 | 8.71E-08 |
| GSE5615 | Col, WT, water 4 h | Col, WT, HrpZ 4 h | -1.64 | 1.12E-06 |
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