co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G53190

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000505: regulation of energy homeostasis	0.00E+00
2	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
3	GO:0005996: monosaccharide metabolic process	0.00E+00
4	GO:0006114: glycerol biosynthetic process	0.00E+00
5	GO:0015979: photosynthesis	4.20E-22
6	GO:0009735: response to cytokinin	1.68E-08
7	GO:0010027: thylakoid membrane organization	3.26E-07
8	GO:0010196: nonphotochemical quenching	1.23E-06
9	GO:0032544: plastid translation	2.77E-06
10	GO:0010206: photosystem II repair	3.91E-06
11	GO:0018119: peptidyl-cysteine S-nitrosylation	9.21E-06
12	GO:0009773: photosynthetic electron transport in photosystem I	9.21E-06
13	GO:0015995: chlorophyll biosynthetic process	1.59E-05
14	GO:0010207: photosystem II assembly	1.81E-05
15	GO:0018298: protein-chromophore linkage	1.96E-05
16	GO:0009409: response to cold	1.97E-05
17	GO:0006109: regulation of carbohydrate metabolic process	2.20E-05
18	GO:0006412: translation	2.63E-05
19	GO:0009768: photosynthesis, light harvesting in photosystem I	3.68E-05
20	GO:0000481: maturation of 5S rRNA	1.69E-04
21	GO:1904964: positive regulation of phytol biosynthetic process	1.69E-04
22	GO:0065002: intracellular protein transmembrane transport	1.69E-04
23	GO:0080093: regulation of photorespiration	1.69E-04
24	GO:0043007: maintenance of rDNA	1.69E-04
25	GO:0031998: regulation of fatty acid beta-oxidation	1.69E-04
26	GO:1902458: positive regulation of stomatal opening	1.69E-04
27	GO:0034337: RNA folding	1.69E-04
28	GO:0043953: protein transport by the Tat complex	1.69E-04
29	GO:1904966: positive regulation of vitamin E biosynthetic process	1.69E-04
30	GO:0016311: dephosphorylation	2.87E-04
31	GO:0019684: photosynthesis, light reaction	3.19E-04
32	GO:0043085: positive regulation of catalytic activity	3.19E-04
33	GO:0045037: protein import into chloroplast stroma	3.66E-04
34	GO:1903426: regulation of reactive oxygen species biosynthetic process	3.83E-04
35	GO:0030388: fructose 1,6-bisphosphate metabolic process	3.83E-04
36	GO:1902326: positive regulation of chlorophyll biosynthetic process	3.83E-04
37	GO:0019388: galactose catabolic process	3.83E-04
38	GO:0071492: cellular response to UV-A	6.25E-04
39	GO:0006000: fructose metabolic process	6.25E-04
40	GO:0090391: granum assembly	6.25E-04
41	GO:0061077: chaperone-mediated protein folding	7.83E-04
42	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	8.93E-04
43	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	8.93E-04
44	GO:0071484: cellular response to light intensity	8.93E-04
45	GO:0010731: protein glutathionylation	8.93E-04
46	GO:0009590: detection of gravity	8.93E-04
47	GO:0043086: negative regulation of catalytic activity	1.03E-03
48	GO:0015976: carbon utilization	1.18E-03
49	GO:0071486: cellular response to high light intensity	1.18E-03
50	GO:0019464: glycine decarboxylation via glycine cleavage system	1.18E-03
51	GO:0009765: photosynthesis, light harvesting	1.18E-03
52	GO:0045727: positive regulation of translation	1.18E-03
53	GO:0015994: chlorophyll metabolic process	1.18E-03
54	GO:0006546: glycine catabolic process	1.18E-03
55	GO:0006662: glycerol ether metabolic process	1.26E-03
56	GO:0045454: cell redox homeostasis	1.47E-03
57	GO:0045038: protein import into chloroplast thylakoid membrane	1.50E-03
58	GO:0006097: glyoxylate cycle	1.50E-03
59	GO:0000304: response to singlet oxygen	1.50E-03
60	GO:0042549: photosystem II stabilization	1.85E-03
61	GO:0030488: tRNA methylation	2.22E-03
62	GO:0009955: adaxial/abaxial pattern specification	2.22E-03
63	GO:1901259: chloroplast rRNA processing	2.22E-03
64	GO:0071446: cellular response to salicylic acid stimulus	2.61E-03
65	GO:0009645: response to low light intensity stimulus	2.61E-03
66	GO:0032508: DNA duplex unwinding	3.02E-03
67	GO:2000070: regulation of response to water deprivation	3.02E-03
68	GO:0000105: histidine biosynthetic process	3.02E-03
69	GO:0005978: glycogen biosynthetic process	3.02E-03
70	GO:0009642: response to light intensity	3.02E-03
71	GO:2000031: regulation of salicylic acid mediated signaling pathway	3.46E-03
72	GO:0006002: fructose 6-phosphate metabolic process	3.46E-03
73	GO:0015996: chlorophyll catabolic process	3.46E-03
74	GO:0007186: G-protein coupled receptor signaling pathway	3.46E-03
75	GO:0034599: cellular response to oxidative stress	3.81E-03
76	GO:0006779: porphyrin-containing compound biosynthetic process	4.38E-03
77	GO:0042254: ribosome biogenesis	4.62E-03
78	GO:0048829: root cap development	4.87E-03
79	GO:0031627: telomeric loop formation	4.87E-03
80	GO:0006782: protoporphyrinogen IX biosynthetic process	4.87E-03
81	GO:0009644: response to high light intensity	5.08E-03
82	GO:0000272: polysaccharide catabolic process	5.38E-03
83	GO:0009089: lysine biosynthetic process via diaminopimelate	5.38E-03
84	GO:0009073: aromatic amino acid family biosynthetic process	5.38E-03
85	GO:0006108: malate metabolic process	6.46E-03
86	GO:0006006: glucose metabolic process	6.46E-03
87	GO:0006094: gluconeogenesis	6.46E-03
88	GO:0009767: photosynthetic electron transport chain	6.46E-03
89	GO:0005986: sucrose biosynthetic process	6.46E-03
90	GO:0010628: positive regulation of gene expression	6.46E-03
91	GO:0019253: reductive pentose-phosphate cycle	7.02E-03
92	GO:0006810: transport	7.47E-03
93	GO:0005985: sucrose metabolic process	7.60E-03
94	GO:0000162: tryptophan biosynthetic process	8.20E-03
95	GO:0006289: nucleotide-excision repair	8.81E-03
96	GO:0019915: lipid storage	1.01E-02
97	GO:0031408: oxylipin biosynthetic process	1.01E-02
98	GO:0009561: megagametogenesis	1.21E-02
99	GO:0042631: cellular response to water deprivation	1.36E-02
100	GO:0042742: defense response to bacterium	1.40E-02
101	GO:0010182: sugar mediated signaling pathway	1.43E-02
102	GO:0019252: starch biosynthetic process	1.58E-02
103	GO:0071554: cell wall organization or biogenesis	1.66E-02
104	GO:0009567: double fertilization forming a zygote and endosperm	1.90E-02
105	GO:0009658: chloroplast organization	2.42E-02
106	GO:0009813: flavonoid biosynthetic process	2.70E-02
107	GO:0010218: response to far red light	2.79E-02
108	GO:0009834: plant-type secondary cell wall biogenesis	2.79E-02
109	GO:0006499: N-terminal protein myristoylation	2.79E-02
110	GO:0009637: response to blue light	3.08E-02
111	GO:0006099: tricarboxylic acid cycle	3.18E-02
112	GO:0030001: metal ion transport	3.38E-02
113	GO:0006631: fatty acid metabolic process	3.49E-02
114	GO:0010114: response to red light	3.69E-02
115	GO:0031347: regulation of defense response	4.23E-02
116	GO:0006364: rRNA processing	4.57E-02
117	GO:0009793: embryo development ending in seed dormancy	4.81E-02
118	GO:0006979: response to oxidative stress	4.87E-02

Rank	GO Term	Adjusted P value
1	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
2	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
3	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
4	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
5	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
6	GO:0019843: rRNA binding	1.64E-12
7	GO:0005528: FK506 binding	8.44E-09
8	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.36E-07
9	GO:0016168: chlorophyll binding	3.81E-07
10	GO:0003735: structural constituent of ribosome	1.90E-06
11	GO:0031409: pigment binding	2.64E-05
12	GO:0004857: enzyme inhibitor activity	3.13E-05
13	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	1.69E-04
14	GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity	1.69E-04
15	GO:0008047: enzyme activator activity	2.75E-04
16	GO:0047746: chlorophyllase activity	3.83E-04
17	GO:0010297: heteropolysaccharide binding	3.83E-04
18	GO:0009977: proton motive force dependent protein transmembrane transporter activity	3.83E-04
19	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	3.83E-04
20	GO:0030385: ferredoxin:thioredoxin reductase activity	3.83E-04
21	GO:0004614: phosphoglucomutase activity	3.83E-04
22	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	3.83E-04
23	GO:0031072: heat shock protein binding	4.18E-04
24	GO:0008266: poly(U) RNA binding	4.71E-04
25	GO:0045174: glutathione dehydrogenase (ascorbate) activity	6.25E-04
26	GO:0004324: ferredoxin-NADP+ reductase activity	6.25E-04
27	GO:0005504: fatty acid binding	6.25E-04
28	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	8.93E-04
29	GO:0004375: glycine dehydrogenase (decarboxylating) activity	8.93E-04
30	GO:0016851: magnesium chelatase activity	8.93E-04
31	GO:0022891: substrate-specific transmembrane transporter activity	9.28E-04
32	GO:0047134: protein-disulfide reductase activity	1.09E-03
33	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.18E-03
34	GO:0080032: methyl jasmonate esterase activity	1.18E-03
35	GO:0043495: protein anchor	1.18E-03
36	GO:0045430: chalcone isomerase activity	1.18E-03
37	GO:0004791: thioredoxin-disulfide reductase activity	1.35E-03
38	GO:0015035: protein disulfide oxidoreductase activity	1.35E-03
39	GO:0003959: NADPH dehydrogenase activity	1.50E-03
40	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.75E-03
41	GO:0016615: malate dehydrogenase activity	1.85E-03
42	GO:0080030: methyl indole-3-acetate esterase activity	1.85E-03
43	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	2.22E-03
44	GO:0030060: L-malate dehydrogenase activity	2.22E-03
45	GO:0004017: adenylate kinase activity	2.22E-03
46	GO:0019899: enzyme binding	2.61E-03
47	GO:0005509: calcium ion binding	3.31E-03
48	GO:0008173: RNA methyltransferase activity	3.46E-03
49	GO:0003993: acid phosphatase activity	3.81E-03
50	GO:0003691: double-stranded telomeric DNA binding	5.38E-03
51	GO:0004089: carbonate dehydratase activity	6.46E-03
52	GO:0004565: beta-galactosidase activity	6.46E-03
53	GO:0051082: unfolded protein binding	9.00E-03
54	GO:0009055: electron carrier activity	1.06E-02
55	GO:0003756: protein disulfide isomerase activity	1.21E-02
56	GO:0016787: hydrolase activity	1.44E-02
57	GO:0050662: coenzyme binding	1.51E-02
58	GO:0048038: quinone binding	1.66E-02
59	GO:0008483: transaminase activity	1.99E-02
60	GO:0016413: O-acetyltransferase activity	2.07E-02
61	GO:0000287: magnesium ion binding	2.37E-02
62	GO:0004364: glutathione transferase activity	3.59E-02

Rank	GO Term	Adjusted P value
1	GO:0042579: microbody	0.00E+00
2	GO:0043235: receptor complex	0.00E+00
3	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
4	GO:0009507: chloroplast	9.30E-60
5	GO:0009534: chloroplast thylakoid	1.59E-47
6	GO:0009535: chloroplast thylakoid membrane	8.88E-47
7	GO:0009941: chloroplast envelope	1.88E-37
8	GO:0009570: chloroplast stroma	4.30E-32
9	GO:0009579: thylakoid	5.44E-32
10	GO:0009543: chloroplast thylakoid lumen	1.34E-26
11	GO:0031977: thylakoid lumen	1.84E-18
12	GO:0030095: chloroplast photosystem II	1.64E-13
13	GO:0009538: photosystem I reaction center	1.76E-13
14	GO:0005840: ribosome	5.50E-10
15	GO:0010287: plastoglobule	1.57E-09
16	GO:0009654: photosystem II oxygen evolving complex	1.13E-08
17	GO:0019898: extrinsic component of membrane	9.53E-08
18	GO:0010319: stromule	2.36E-07
19	GO:0042651: thylakoid membrane	3.68E-05
20	GO:0009522: photosystem I	1.03E-04
21	GO:0009523: photosystem II	1.14E-04
22	GO:0048046: apoplast	1.25E-04
23	GO:0031361: integral component of thylakoid membrane	1.69E-04
24	GO:0009782: photosystem I antenna complex	1.69E-04
25	GO:0009783: photosystem II antenna complex	1.69E-04
26	GO:0009515: granal stacked thylakoid	1.69E-04
27	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.95E-04
28	GO:0000427: plastid-encoded plastid RNA polymerase complex	3.83E-04
29	GO:0030076: light-harvesting complex	5.27E-04
30	GO:0009528: plastid inner membrane	6.25E-04
31	GO:0010007: magnesium chelatase complex	6.25E-04
32	GO:0033281: TAT protein transport complex	6.25E-04
33	GO:0015935: small ribosomal subunit	7.83E-04
34	GO:0005960: glycine cleavage complex	8.93E-04
35	GO:0009527: plastid outer membrane	1.18E-03
36	GO:0015934: large ribosomal subunit	3.33E-03
37	GO:0000783: nuclear telomere cap complex	3.46E-03
38	GO:0005763: mitochondrial small ribosomal subunit	3.91E-03
39	GO:0032040: small-subunit processome	5.91E-03
40	GO:0009508: plastid chromosome	6.46E-03
41	GO:0043234: protein complex	8.20E-03
42	GO:0009706: chloroplast inner membrane	9.00E-03
43	GO:0009532: plastid stroma	1.01E-02
44	GO:0005623: cell	1.16E-02
45	GO:0016020: membrane	1.39E-02
46	GO:0009295: nucleoid	1.99E-02
47	GO:0009707: chloroplast outer membrane	2.61E-02
48	GO:0031969: chloroplast membrane	3.00E-02