GO Enrichment Analysis of Co-expressed Genes with
AT3G53190
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0080094: response to trehalose-6-phosphate | 0.00E+00 |
| 2 | GO:0010430: fatty acid omega-oxidation | 0.00E+00 |
| 3 | GO:0032544: plastid translation | 3.92E-05 |
| 4 | GO:1901599: (-)-pinoresinol biosynthetic process | 6.74E-05 |
| 5 | GO:0019510: S-adenosylhomocysteine catabolic process | 6.74E-05 |
| 6 | GO:0006169: adenosine salvage | 6.74E-05 |
| 7 | GO:2000123: positive regulation of stomatal complex development | 1.62E-04 |
| 8 | GO:0010424: DNA methylation on cytosine within a CG sequence | 1.62E-04 |
| 9 | GO:0010069: zygote asymmetric cytokinesis in embryo sac | 1.62E-04 |
| 10 | GO:0033353: S-adenosylmethionine cycle | 1.62E-04 |
| 11 | GO:0006065: UDP-glucuronate biosynthetic process | 2.75E-04 |
| 12 | GO:0009294: DNA mediated transformation | 2.77E-04 |
| 13 | GO:0006241: CTP biosynthetic process | 3.98E-04 |
| 14 | GO:0006165: nucleoside diphosphate phosphorylation | 3.98E-04 |
| 15 | GO:0006228: UTP biosynthetic process | 3.98E-04 |
| 16 | GO:0010583: response to cyclopentenone | 5.01E-04 |
| 17 | GO:0009765: photosynthesis, light harvesting | 5.32E-04 |
| 18 | GO:0006183: GTP biosynthetic process | 5.32E-04 |
| 19 | GO:2000038: regulation of stomatal complex development | 5.32E-04 |
| 20 | GO:0006546: glycine catabolic process | 5.32E-04 |
| 21 | GO:0045490: pectin catabolic process | 5.47E-04 |
| 22 | GO:0007267: cell-cell signaling | 6.01E-04 |
| 23 | GO:0016123: xanthophyll biosynthetic process | 6.73E-04 |
| 24 | GO:0044209: AMP salvage | 6.73E-04 |
| 25 | GO:0010375: stomatal complex patterning | 6.73E-04 |
| 26 | GO:0016120: carotene biosynthetic process | 6.73E-04 |
| 27 | GO:0006796: phosphate-containing compound metabolic process | 8.23E-04 |
| 28 | GO:0046686: response to cadmium ion | 9.11E-04 |
| 29 | GO:0010555: response to mannitol | 9.79E-04 |
| 30 | GO:0009955: adaxial/abaxial pattern specification | 9.79E-04 |
| 31 | GO:1901259: chloroplast rRNA processing | 9.79E-04 |
| 32 | GO:0050790: regulation of catalytic activity | 1.14E-03 |
| 33 | GO:0009642: response to light intensity | 1.32E-03 |
| 34 | GO:0006875: cellular metal ion homeostasis | 1.32E-03 |
| 35 | GO:0051707: response to other organism | 1.38E-03 |
| 36 | GO:0006526: arginine biosynthetic process | 1.50E-03 |
| 37 | GO:0048589: developmental growth | 1.69E-03 |
| 38 | GO:0006349: regulation of gene expression by genetic imprinting | 1.89E-03 |
| 39 | GO:0042742: defense response to bacterium | 2.09E-03 |
| 40 | GO:0006412: translation | 2.12E-03 |
| 41 | GO:0018119: peptidyl-cysteine S-nitrosylation | 2.31E-03 |
| 42 | GO:0010216: maintenance of DNA methylation | 2.31E-03 |
| 43 | GO:0009807: lignan biosynthetic process | 2.31E-03 |
| 44 | GO:0045037: protein import into chloroplast stroma | 2.53E-03 |
| 45 | GO:0050826: response to freezing | 2.76E-03 |
| 46 | GO:0009735: response to cytokinin | 3.67E-03 |
| 47 | GO:0019344: cysteine biosynthetic process | 3.73E-03 |
| 48 | GO:0007010: cytoskeleton organization | 3.73E-03 |
| 49 | GO:0048278: vesicle docking | 4.26E-03 |
| 50 | GO:0006730: one-carbon metabolic process | 4.53E-03 |
| 51 | GO:0009411: response to UV | 4.81E-03 |
| 52 | GO:0006284: base-excision repair | 5.09E-03 |
| 53 | GO:0016117: carotenoid biosynthetic process | 5.38E-03 |
| 54 | GO:0000413: protein peptidyl-prolyl isomerization | 5.68E-03 |
| 55 | GO:0000271: polysaccharide biosynthetic process | 5.68E-03 |
| 56 | GO:0045489: pectin biosynthetic process | 5.98E-03 |
| 57 | GO:0006520: cellular amino acid metabolic process | 5.98E-03 |
| 58 | GO:0061025: membrane fusion | 6.28E-03 |
| 59 | GO:0007059: chromosome segregation | 6.28E-03 |
| 60 | GO:0071554: cell wall organization or biogenesis | 6.91E-03 |
| 61 | GO:0042254: ribosome biogenesis | 7.04E-03 |
| 62 | GO:0007264: small GTPase mediated signal transduction | 7.24E-03 |
| 63 | GO:0016032: viral process | 7.24E-03 |
| 64 | GO:0006906: vesicle fusion | 9.65E-03 |
| 65 | GO:0010411: xyloglucan metabolic process | 1.00E-02 |
| 66 | GO:0071555: cell wall organization | 1.01E-02 |
| 67 | GO:0045454: cell redox homeostasis | 1.03E-02 |
| 68 | GO:0016311: dephosphorylation | 1.04E-02 |
| 69 | GO:0048767: root hair elongation | 1.11E-02 |
| 70 | GO:0009813: flavonoid biosynthetic process | 1.11E-02 |
| 71 | GO:0009910: negative regulation of flower development | 1.19E-02 |
| 72 | GO:0016051: carbohydrate biosynthetic process | 1.27E-02 |
| 73 | GO:0006839: mitochondrial transport | 1.39E-02 |
| 74 | GO:0006887: exocytosis | 1.44E-02 |
| 75 | GO:0006631: fatty acid metabolic process | 1.44E-02 |
| 76 | GO:0042542: response to hydrogen peroxide | 1.48E-02 |
| 77 | GO:0042546: cell wall biogenesis | 1.57E-02 |
| 78 | GO:0009585: red, far-red light phototransduction | 1.88E-02 |
| 79 | GO:0051603: proteolysis involved in cellular protein catabolic process | 1.93E-02 |
| 80 | GO:0048367: shoot system development | 2.17E-02 |
| 81 | GO:0016569: covalent chromatin modification | 2.31E-02 |
| 82 | GO:0042545: cell wall modification | 2.37E-02 |
| 83 | GO:0009553: embryo sac development | 2.37E-02 |
| 84 | GO:0051301: cell division | 2.46E-02 |
| 85 | GO:0009742: brassinosteroid mediated signaling pathway | 2.52E-02 |
| 86 | GO:0055114: oxidation-reduction process | 2.62E-02 |
| 87 | GO:0009617: response to bacterium | 4.04E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0045435: lycopene epsilon cyclase activity | 0.00E+00 |
| 2 | GO:0051920: peroxiredoxin activity | 1.69E-05 |
| 3 | GO:0019843: rRNA binding | 2.56E-05 |
| 4 | GO:0016209: antioxidant activity | 3.06E-05 |
| 5 | GO:0015088: copper uptake transmembrane transporter activity | 6.74E-05 |
| 6 | GO:0042349: guiding stereospecific synthesis activity | 6.74E-05 |
| 7 | GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity | 6.74E-05 |
| 8 | GO:0047259: glucomannan 4-beta-mannosyltransferase activity | 6.74E-05 |
| 9 | GO:0004560: alpha-L-fucosidase activity | 6.74E-05 |
| 10 | GO:0004013: adenosylhomocysteinase activity | 6.74E-05 |
| 11 | GO:0004001: adenosine kinase activity | 6.74E-05 |
| 12 | GO:0051287: NAD binding | 1.43E-04 |
| 13 | GO:0004047: aminomethyltransferase activity | 1.62E-04 |
| 14 | GO:0046593: mandelonitrile lyase activity | 1.62E-04 |
| 15 | GO:0030267: glyoxylate reductase (NADP) activity | 2.75E-04 |
| 16 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 2.75E-04 |
| 17 | GO:0003979: UDP-glucose 6-dehydrogenase activity | 2.75E-04 |
| 18 | GO:0005504: fatty acid binding | 2.75E-04 |
| 19 | GO:0030570: pectate lyase activity | 2.77E-04 |
| 20 | GO:0003735: structural constituent of ribosome | 3.10E-04 |
| 21 | GO:0004550: nucleoside diphosphate kinase activity | 3.98E-04 |
| 22 | GO:0045430: chalcone isomerase activity | 5.32E-04 |
| 23 | GO:0008725: DNA-3-methyladenine glycosylase activity | 6.73E-04 |
| 24 | GO:0016462: pyrophosphatase activity | 8.23E-04 |
| 25 | GO:0016832: aldehyde-lyase activity | 9.79E-04 |
| 26 | GO:0003886: DNA (cytosine-5-)-methyltransferase activity | 9.79E-04 |
| 27 | GO:0051753: mannan synthase activity | 9.79E-04 |
| 28 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 9.79E-04 |
| 29 | GO:0004427: inorganic diphosphatase activity | 1.14E-03 |
| 30 | GO:0005507: copper ion binding | 1.23E-03 |
| 31 | GO:0005381: iron ion transmembrane transporter activity | 1.89E-03 |
| 32 | GO:0004565: beta-galactosidase activity | 2.76E-03 |
| 33 | GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity | 4.53E-03 |
| 34 | GO:0019901: protein kinase binding | 6.60E-03 |
| 35 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 6.91E-03 |
| 36 | GO:0004601: peroxidase activity | 6.91E-03 |
| 37 | GO:0005200: structural constituent of cytoskeleton | 8.24E-03 |
| 38 | GO:0008483: transaminase activity | 8.24E-03 |
| 39 | GO:0016413: O-acetyltransferase activity | 8.59E-03 |
| 40 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 1.00E-02 |
| 41 | GO:0042803: protein homodimerization activity | 1.08E-02 |
| 42 | GO:0030145: manganese ion binding | 1.19E-02 |
| 43 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 1.19E-02 |
| 44 | GO:0003993: acid phosphatase activity | 1.31E-02 |
| 45 | GO:0000149: SNARE binding | 1.35E-02 |
| 46 | GO:0004185: serine-type carboxypeptidase activity | 1.52E-02 |
| 47 | GO:0005484: SNAP receptor activity | 1.52E-02 |
| 48 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.70E-02 |
| 49 | GO:0045330: aspartyl esterase activity | 2.02E-02 |
| 50 | GO:0045735: nutrient reservoir activity | 2.12E-02 |
| 51 | GO:0004650: polygalacturonase activity | 2.26E-02 |
| 52 | GO:0030599: pectinesterase activity | 2.31E-02 |
| 53 | GO:0016758: transferase activity, transferring hexosyl groups | 2.78E-02 |
| 54 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 2.89E-02 |
| 55 | GO:0016829: lyase activity | 3.00E-02 |
| 56 | GO:0008017: microtubule binding | 3.68E-02 |
| 57 | GO:0042802: identical protein binding | 4.23E-02 |
| 58 | GO:0016757: transferase activity, transferring glycosyl groups | 4.66E-02 |
| 59 | GO:0008168: methyltransferase activity | 4.73E-02 |
| 60 | GO:0000287: magnesium ion binding | 4.80E-02 |
| 61 | GO:0046982: protein heterodimerization activity | 4.80E-02 |
| 62 | GO:0016788: hydrolase activity, acting on ester bonds | 4.93E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000940: condensed chromosome outer kinetochore | 0.00E+00 |
| 2 | GO:0009570: chloroplast stroma | 8.57E-11 |
| 3 | GO:0009579: thylakoid | 1.20E-10 |
| 4 | GO:0048046: apoplast | 5.00E-09 |
| 5 | GO:0009507: chloroplast | 2.15E-07 |
| 6 | GO:0009941: chloroplast envelope | 2.23E-07 |
| 7 | GO:0031225: anchored component of membrane | 2.75E-06 |
| 8 | GO:0046658: anchored component of plasma membrane | 4.68E-06 |
| 9 | GO:0005576: extracellular region | 1.71E-05 |
| 10 | GO:0031977: thylakoid lumen | 9.62E-05 |
| 11 | GO:0000311: plastid large ribosomal subunit | 9.94E-05 |
| 12 | GO:0005840: ribosome | 4.53E-04 |
| 13 | GO:0031897: Tic complex | 5.32E-04 |
| 14 | GO:0009505: plant-type cell wall | 6.24E-04 |
| 15 | GO:0010168: ER body | 8.23E-04 |
| 16 | GO:0005618: cell wall | 1.24E-03 |
| 17 | GO:0009539: photosystem II reaction center | 1.50E-03 |
| 18 | GO:0005763: mitochondrial small ribosomal subunit | 1.69E-03 |
| 19 | GO:0009535: chloroplast thylakoid membrane | 1.71E-03 |
| 20 | GO:0005876: spindle microtubule | 1.89E-03 |
| 21 | GO:0009543: chloroplast thylakoid lumen | 3.25E-03 |
| 22 | GO:0009654: photosystem II oxygen evolving complex | 3.99E-03 |
| 23 | GO:0009534: chloroplast thylakoid | 5.22E-03 |
| 24 | GO:0009504: cell plate | 6.60E-03 |
| 25 | GO:0016020: membrane | 6.67E-03 |
| 26 | GO:0010319: stromule | 8.24E-03 |
| 27 | GO:0000325: plant-type vacuole | 1.19E-02 |
| 28 | GO:0000786: nucleosome | 1.23E-02 |
| 29 | GO:0009536: plastid | 1.31E-02 |
| 30 | GO:0031201: SNARE complex | 1.44E-02 |
| 31 | GO:0005856: cytoskeleton | 1.65E-02 |
| 32 | GO:0022626: cytosolic ribosome | 2.16E-02 |
| 33 | GO:0012505: endomembrane system | 2.37E-02 |
| 34 | GO:0009706: chloroplast inner membrane | 2.42E-02 |
| 35 | GO:0009524: phragmoplast | 2.94E-02 |
| 36 | GO:0005615: extracellular space | 3.86E-02 |