Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G53190

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006399: tRNA metabolic process0.00E+00
2GO:0006429: leucyl-tRNA aminoacylation0.00E+00
3GO:1905421: regulation of plant organ morphogenesis0.00E+00
4GO:0043488: regulation of mRNA stability0.00E+00
5GO:0030155: regulation of cell adhesion0.00E+00
6GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
7GO:0018131: oxazole or thiazole biosynthetic process0.00E+00
8GO:0090071: negative regulation of ribosome biogenesis0.00E+00
9GO:0046460: neutral lipid biosynthetic process0.00E+00
10GO:0007638: mechanosensory behavior0.00E+00
11GO:0031116: positive regulation of microtubule polymerization0.00E+00
12GO:0042817: pyridoxal metabolic process0.00E+00
13GO:1905177: tracheary element differentiation0.00E+00
14GO:0009658: chloroplast organization1.29E-08
15GO:0009657: plastid organization1.60E-05
16GO:0006415: translational termination4.88E-05
17GO:0006730: one-carbon metabolic process2.22E-04
18GO:0048528: post-embryonic root development2.96E-04
19GO:1902458: positive regulation of stomatal opening3.44E-04
20GO:0005991: trehalose metabolic process3.44E-04
21GO:0006747: FAD biosynthetic process3.44E-04
22GO:0010729: positive regulation of hydrogen peroxide biosynthetic process3.44E-04
23GO:0006419: alanyl-tRNA aminoacylation3.44E-04
24GO:2000025: regulation of leaf formation3.44E-04
25GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process3.44E-04
26GO:0000476: maturation of 4.5S rRNA3.44E-04
27GO:0000967: rRNA 5'-end processing3.44E-04
28GO:0070509: calcium ion import3.44E-04
29GO:0042547: cell wall modification involved in multidimensional cell growth3.44E-04
30GO:0042371: vitamin K biosynthetic process3.44E-04
31GO:0006353: DNA-templated transcription, termination3.72E-04
32GO:0070413: trehalose metabolism in response to stress3.72E-04
33GO:1900865: chloroplast RNA modification6.45E-04
34GO:0001682: tRNA 5'-leader removal7.51E-04
35GO:1903426: regulation of reactive oxygen species biosynthetic process7.51E-04
36GO:0034470: ncRNA processing7.51E-04
37GO:0006739: NADP metabolic process7.51E-04
38GO:0034755: iron ion transmembrane transport7.51E-04
39GO:1900033: negative regulation of trichome patterning7.51E-04
40GO:0009220: pyrimidine ribonucleotide biosynthetic process7.51E-04
41GO:0009627: systemic acquired resistance9.27E-04
42GO:0005977: glycogen metabolic process1.21E-03
43GO:0048281: inflorescence morphogenesis1.21E-03
44GO:0006954: inflammatory response1.21E-03
45GO:0010623: programmed cell death involved in cell development1.21E-03
46GO:0001578: microtubule bundle formation1.21E-03
47GO:0045493: xylan catabolic process1.21E-03
48GO:0070588: calcium ion transmembrane transport1.41E-03
49GO:0005992: trehalose biosynthetic process1.74E-03
50GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.75E-03
51GO:0007231: osmosensory signaling pathway1.75E-03
52GO:0051639: actin filament network formation1.75E-03
53GO:0010239: chloroplast mRNA processing1.75E-03
54GO:0009226: nucleotide-sugar biosynthetic process1.75E-03
55GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity1.75E-03
56GO:0008615: pyridoxine biosynthetic process1.75E-03
57GO:0010148: transpiration1.75E-03
58GO:0016556: mRNA modification1.75E-03
59GO:2001141: regulation of RNA biosynthetic process1.75E-03
60GO:0048629: trichome patterning2.35E-03
61GO:0051764: actin crosslink formation2.35E-03
62GO:0051322: anaphase2.35E-03
63GO:0009765: photosynthesis, light harvesting2.35E-03
64GO:0033500: carbohydrate homeostasis2.35E-03
65GO:0010508: positive regulation of autophagy2.35E-03
66GO:0007020: microtubule nucleation2.35E-03
67GO:0006734: NADH metabolic process2.35E-03
68GO:0044205: 'de novo' UMP biosynthetic process2.35E-03
69GO:0010021: amylopectin biosynthetic process2.35E-03
70GO:0016123: xanthophyll biosynthetic process3.00E-03
71GO:0010158: abaxial cell fate specification3.00E-03
72GO:0046785: microtubule polymerization3.00E-03
73GO:0016120: carotene biosynthetic process3.00E-03
74GO:0032543: mitochondrial translation3.00E-03
75GO:0010236: plastoquinone biosynthetic process3.00E-03
76GO:0045038: protein import into chloroplast thylakoid membrane3.00E-03
77GO:0008033: tRNA processing3.20E-03
78GO:0006655: phosphatidylglycerol biosynthetic process3.71E-03
79GO:0016554: cytidine to uridine editing3.71E-03
80GO:0032973: amino acid export3.71E-03
81GO:0009228: thiamine biosynthetic process3.71E-03
82GO:0009648: photoperiodism4.47E-03
83GO:0042372: phylloquinone biosynthetic process4.47E-03
84GO:0034389: lipid particle organization4.47E-03
85GO:0017148: negative regulation of translation4.47E-03
86GO:1901259: chloroplast rRNA processing4.47E-03
87GO:0010103: stomatal complex morphogenesis5.27E-03
88GO:0009772: photosynthetic electron transport in photosystem II5.27E-03
89GO:0043090: amino acid import5.27E-03
90GO:0010050: vegetative phase change5.27E-03
91GO:0070370: cellular heat acclimation5.27E-03
92GO:0010196: nonphotochemical quenching5.27E-03
93GO:0010444: guard mother cell differentiation5.27E-03
94GO:0006400: tRNA modification5.27E-03
95GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process5.27E-03
96GO:0009793: embryo development ending in seed dormancy5.84E-03
97GO:0000105: histidine biosynthetic process6.13E-03
98GO:0009231: riboflavin biosynthetic process6.13E-03
99GO:0052543: callose deposition in cell wall6.13E-03
100GO:0006402: mRNA catabolic process6.13E-03
101GO:0009850: auxin metabolic process6.13E-03
102GO:0042255: ribosome assembly6.13E-03
103GO:0009704: de-etiolation6.13E-03
104GO:2000070: regulation of response to water deprivation6.13E-03
105GO:0010027: thylakoid membrane organization6.16E-03
106GO:0005975: carbohydrate metabolic process6.23E-03
107GO:0009932: cell tip growth7.03E-03
108GO:0071482: cellular response to light stimulus7.03E-03
109GO:0001558: regulation of cell growth7.03E-03
110GO:0009827: plant-type cell wall modification7.03E-03
111GO:0032544: plastid translation7.03E-03
112GO:0009790: embryo development7.78E-03
113GO:0006098: pentose-phosphate shunt7.97E-03
114GO:0080144: amino acid homeostasis7.97E-03
115GO:0019432: triglyceride biosynthetic process7.97E-03
116GO:0000373: Group II intron splicing7.97E-03
117GO:0009638: phototropism8.96E-03
118GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway8.96E-03
119GO:0045036: protein targeting to chloroplast1.00E-02
120GO:0006949: syncytium formation1.00E-02
121GO:0006259: DNA metabolic process1.00E-02
122GO:0009684: indoleacetic acid biosynthetic process1.11E-02
123GO:0010015: root morphogenesis1.11E-02
124GO:0006816: calcium ion transport1.11E-02
125GO:0006265: DNA topological change1.11E-02
126GO:0009089: lysine biosynthetic process via diaminopimelate1.11E-02
127GO:1903507: negative regulation of nucleic acid-templated transcription1.11E-02
128GO:0006879: cellular iron ion homeostasis1.11E-02
129GO:0006352: DNA-templated transcription, initiation1.11E-02
130GO:0007166: cell surface receptor signaling pathway1.14E-02
131GO:0008380: RNA splicing1.21E-02
132GO:0016024: CDP-diacylglycerol biosynthetic process1.22E-02
133GO:0045037: protein import into chloroplast stroma1.22E-02
134GO:0010582: floral meristem determinacy1.22E-02
135GO:0050826: response to freezing1.33E-02
136GO:0006094: gluconeogenesis1.33E-02
137GO:2000012: regulation of auxin polar transport1.33E-02
138GO:0009785: blue light signaling pathway1.33E-02
139GO:0010207: photosystem II assembly1.45E-02
140GO:0010020: chloroplast fission1.45E-02
141GO:0009965: leaf morphogenesis1.49E-02
142GO:0071732: cellular response to nitric oxide1.58E-02
143GO:0090351: seedling development1.58E-02
144GO:0009664: plant-type cell wall organization1.66E-02
145GO:0006071: glycerol metabolic process1.70E-02
146GO:0006833: water transport1.70E-02
147GO:0000162: tryptophan biosynthetic process1.70E-02
148GO:0016310: phosphorylation1.73E-02
149GO:0006364: rRNA processing1.79E-02
150GO:0009116: nucleoside metabolic process1.83E-02
151GO:0009944: polarity specification of adaxial/abaxial axis1.83E-02
152GO:0030150: protein import into mitochondrial matrix1.83E-02
153GO:0007010: cytoskeleton organization1.83E-02
154GO:0051017: actin filament bundle assembly1.83E-02
155GO:0051603: proteolysis involved in cellular protein catabolic process1.85E-02
156GO:0051302: regulation of cell division1.96E-02
157GO:0006418: tRNA aminoacylation for protein translation1.96E-02
158GO:0043622: cortical microtubule organization1.96E-02
159GO:0006468: protein phosphorylation2.02E-02
160GO:0048511: rhythmic process2.10E-02
161GO:0080167: response to karrikin2.21E-02
162GO:0031348: negative regulation of defense response2.24E-02
163GO:0009814: defense response, incompatible interaction2.24E-02
164GO:2000022: regulation of jasmonic acid mediated signaling pathway2.24E-02
165GO:0071555: cell wall organization2.30E-02
166GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.30E-02
167GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.38E-02
168GO:0010082: regulation of root meristem growth2.38E-02
169GO:0009686: gibberellin biosynthetic process2.38E-02
170GO:0071369: cellular response to ethylene stimulus2.38E-02
171GO:0001944: vasculature development2.38E-02
172GO:0010089: xylem development2.53E-02
173GO:0045492: xylan biosynthetic process2.53E-02
174GO:0009306: protein secretion2.53E-02
175GO:0016117: carotenoid biosynthetic process2.68E-02
176GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.68E-02
177GO:0048653: anther development2.83E-02
178GO:0000271: polysaccharide biosynthetic process2.83E-02
179GO:0034220: ion transmembrane transport2.83E-02
180GO:0010182: sugar mediated signaling pathway2.99E-02
181GO:0010268: brassinosteroid homeostasis2.99E-02
182GO:0045489: pectin biosynthetic process2.99E-02
183GO:0006662: glycerol ether metabolic process2.99E-02
184GO:0042752: regulation of circadian rhythm3.15E-02
185GO:0007059: chromosome segregation3.15E-02
186GO:0019252: starch biosynthetic process3.31E-02
187GO:0008654: phospholipid biosynthetic process3.31E-02
188GO:0016042: lipid catabolic process3.46E-02
189GO:0016132: brassinosteroid biosynthetic process3.47E-02
190GO:0000302: response to reactive oxygen species3.47E-02
191GO:0002229: defense response to oomycetes3.47E-02
192GO:0032502: developmental process3.64E-02
193GO:0016032: viral process3.64E-02
194GO:0071281: cellular response to iron ion3.81E-02
195GO:0016125: sterol metabolic process3.98E-02
196GO:0009828: plant-type cell wall loosening3.98E-02
197GO:0006413: translational initiation4.09E-02
198GO:0071805: potassium ion transmembrane transport4.15E-02
199GO:0040008: regulation of growth4.19E-02
200GO:0000910: cytokinesis4.33E-02
201GO:0001666: response to hypoxia4.51E-02
202GO:0009911: positive regulation of flower development4.51E-02
203GO:0006974: cellular response to DNA damage stimulus4.87E-02
RankGO TermAdjusted P value
1GO:0015267: channel activity0.00E+00
2GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
3GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
4GO:0043864: indoleacetamide hydrolase activity0.00E+00
5GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
6GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
7GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
8GO:0045435: lycopene epsilon cyclase activity0.00E+00
9GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
10GO:0004823: leucine-tRNA ligase activity0.00E+00
11GO:0004056: argininosuccinate lyase activity0.00E+00
12GO:0004326: tetrahydrofolylpolyglutamate synthase activity5.37E-06
13GO:0003747: translation release factor activity2.21E-05
14GO:0016149: translation release factor activity, codon specific4.18E-05
15GO:0004040: amidase activity1.16E-04
16GO:0005227: calcium activated cation channel activity3.44E-04
17GO:0004733: pyridoxamine-phosphate oxidase activity3.44E-04
18GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity3.44E-04
19GO:0051777: ent-kaurenoate oxidase activity3.44E-04
20GO:0004813: alanine-tRNA ligase activity3.44E-04
21GO:0052856: NADHX epimerase activity3.44E-04
22GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.44E-04
23GO:0052857: NADPHX epimerase activity3.44E-04
24GO:0010285: L,L-diaminopimelate aminotransferase activity3.44E-04
25GO:0009977: proton motive force dependent protein transmembrane transporter activity7.51E-04
26GO:0003919: FMN adenylyltransferase activity7.51E-04
27GO:0019156: isoamylase activity7.51E-04
28GO:0005262: calcium channel activity1.12E-03
29GO:0052692: raffinose alpha-galactosidase activity1.21E-03
30GO:0070330: aromatase activity1.21E-03
31GO:0002161: aminoacyl-tRNA editing activity1.21E-03
32GO:0004557: alpha-galactosidase activity1.21E-03
33GO:0005525: GTP binding1.59E-03
34GO:0001872: (1->3)-beta-D-glucan binding1.75E-03
35GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity1.75E-03
36GO:0016851: magnesium chelatase activity1.75E-03
37GO:0043023: ribosomal large subunit binding1.75E-03
38GO:0043621: protein self-association2.31E-03
39GO:0004659: prenyltransferase activity2.35E-03
40GO:0001053: plastid sigma factor activity2.35E-03
41GO:0004045: aminoacyl-tRNA hydrolase activity2.35E-03
42GO:0016987: sigma factor activity2.35E-03
43GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds2.35E-03
44GO:0009044: xylan 1,4-beta-xylosidase activity2.35E-03
45GO:0019199: transmembrane receptor protein kinase activity2.35E-03
46GO:0042277: peptide binding2.35E-03
47GO:0046556: alpha-L-arabinofuranosidase activity2.35E-03
48GO:0018685: alkane 1-monooxygenase activity3.00E-03
49GO:0004605: phosphatidate cytidylyltransferase activity3.71E-03
50GO:0004332: fructose-bisphosphate aldolase activity3.71E-03
51GO:0004526: ribonuclease P activity3.71E-03
52GO:0004556: alpha-amylase activity3.71E-03
53GO:0042578: phosphoric ester hydrolase activity3.71E-03
54GO:0003723: RNA binding4.27E-03
55GO:0003730: mRNA 3'-UTR binding4.47E-03
56GO:0004144: diacylglycerol O-acyltransferase activity4.47E-03
57GO:0016791: phosphatase activity5.17E-03
58GO:0019899: enzyme binding5.27E-03
59GO:0016597: amino acid binding5.82E-03
60GO:0043022: ribosome binding6.13E-03
61GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity7.03E-03
62GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity8.05E-03
63GO:0004675: transmembrane receptor protein serine/threonine kinase activity8.81E-03
64GO:0005381: iron ion transmembrane transporter activity8.96E-03
65GO:0003924: GTPase activity9.73E-03
66GO:0004713: protein tyrosine kinase activity1.00E-02
67GO:0004805: trehalose-phosphatase activity1.00E-02
68GO:0008017: microtubule binding1.02E-02
69GO:0016301: kinase activity1.05E-02
70GO:0004519: endonuclease activity1.11E-02
71GO:0008327: methyl-CpG binding1.11E-02
72GO:0000049: tRNA binding1.22E-02
73GO:0004185: serine-type carboxypeptidase activity1.32E-02
74GO:0004089: carbonate dehydratase activity1.33E-02
75GO:0004565: beta-galactosidase activity1.33E-02
76GO:0015266: protein channel activity1.33E-02
77GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.45E-02
78GO:0016788: hydrolase activity, acting on ester bonds1.72E-02
79GO:0003714: transcription corepressor activity1.83E-02
80GO:0015079: potassium ion transmembrane transporter activity1.96E-02
81GO:0004176: ATP-dependent peptidase activity2.10E-02
82GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.24E-02
83GO:0030570: pectate lyase activity2.38E-02
84GO:0052689: carboxylic ester hydrolase activity2.50E-02
85GO:0003727: single-stranded RNA binding2.53E-02
86GO:0047134: protein-disulfide reductase activity2.68E-02
87GO:0004812: aminoacyl-tRNA ligase activity2.68E-02
88GO:0008536: Ran GTPase binding2.99E-02
89GO:0004791: thioredoxin-disulfide reductase activity3.15E-02
90GO:0010181: FMN binding3.15E-02
91GO:0019843: rRNA binding3.19E-02
92GO:0016829: lyase activity3.45E-02
93GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds3.46E-02
94GO:0051015: actin filament binding3.81E-02
95GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.81E-02
96GO:0009055: electron carrier activity3.91E-02
97GO:0008483: transaminase activity4.15E-02
98GO:0008237: metallopeptidase activity4.15E-02
99GO:0015250: water channel activity4.51E-02
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Gene type



Gene DE type