co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G53190

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070125: mitochondrial translational elongation	0.00E+00
2	GO:0070979: protein K11-linked ubiquitination	0.00E+00
3	GO:2000505: regulation of energy homeostasis	0.00E+00
4	GO:0010081: regulation of inflorescence meristem growth	0.00E+00
5	GO:0007638: mechanosensory behavior	0.00E+00
6	GO:0000372: Group I intron splicing	0.00E+00
7	GO:0006114: glycerol biosynthetic process	0.00E+00
8	GO:0032212: positive regulation of telomere maintenance via telomerase	0.00E+00
9	GO:0032206: positive regulation of telomere maintenance	0.00E+00
10	GO:0006399: tRNA metabolic process	0.00E+00
11	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
12	GO:0000373: Group II intron splicing	1.77E-05
13	GO:0010207: photosystem II assembly	7.33E-05
14	GO:0048363: mucilage pectin metabolic process	3.14E-04
15	GO:0006419: alanyl-tRNA aminoacylation	3.14E-04
16	GO:0070509: calcium ion import	3.14E-04
17	GO:0043489: RNA stabilization	3.14E-04
18	GO:0043266: regulation of potassium ion transport	3.14E-04
19	GO:0010080: regulation of floral meristem growth	3.14E-04
20	GO:0043087: regulation of GTPase activity	3.14E-04
21	GO:2000021: regulation of ion homeostasis	3.14E-04
22	GO:0006436: tryptophanyl-tRNA aminoacylation	3.14E-04
23	GO:0000066: mitochondrial ornithine transport	3.14E-04
24	GO:0048564: photosystem I assembly	3.24E-04
25	GO:0006353: DNA-templated transcription, termination	3.24E-04
26	GO:0006779: porphyrin-containing compound biosynthetic process	5.66E-04
27	GO:0006782: protoporphyrinogen IX biosynthetic process	6.60E-04
28	GO:0060359: response to ammonium ion	6.87E-04
29	GO:0048255: mRNA stabilization	6.87E-04
30	GO:0071668: plant-type cell wall assembly	6.87E-04
31	GO:0001736: establishment of planar polarity	6.87E-04
32	GO:0045037: protein import into chloroplast stroma	8.70E-04
33	GO:0010581: regulation of starch biosynthetic process	1.11E-03
34	GO:0010022: meristem determinacy	1.11E-03
35	GO:0031145: anaphase-promoting complex-dependent catabolic process	1.11E-03
36	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	1.11E-03
37	GO:0006696: ergosterol biosynthetic process	1.11E-03
38	GO:0043157: response to cation stress	1.11E-03
39	GO:0070588: calcium ion transmembrane transport	1.24E-03
40	GO:0009793: embryo development ending in seed dormancy	1.50E-03
41	GO:0007010: cytoskeleton organization	1.52E-03
42	GO:0051513: regulation of monopolar cell growth	1.60E-03
43	GO:0007231: osmosensory signaling pathway	1.60E-03
44	GO:0030071: regulation of mitotic metaphase/anaphase transition	1.60E-03
45	GO:0051639: actin filament network formation	1.60E-03
46	GO:0010239: chloroplast mRNA processing	1.60E-03
47	GO:0019048: modulation by virus of host morphology or physiology	1.60E-03
48	GO:0042989: sequestering of actin monomers	1.60E-03
49	GO:0031048: chromatin silencing by small RNA	1.60E-03
50	GO:2001141: regulation of RNA biosynthetic process	1.60E-03
51	GO:0051781: positive regulation of cell division	2.14E-03
52	GO:0051764: actin crosslink formation	2.14E-03
53	GO:0006661: phosphatidylinositol biosynthetic process	2.14E-03
54	GO:0033500: carbohydrate homeostasis	2.14E-03
55	GO:0051567: histone H3-K9 methylation	2.14E-03
56	GO:0008295: spermidine biosynthetic process	2.14E-03
57	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.20E-03
58	GO:0016117: carotenoid biosynthetic process	2.59E-03
59	GO:1902183: regulation of shoot apical meristem development	2.74E-03
60	GO:0016123: xanthophyll biosynthetic process	2.74E-03
61	GO:0010158: abaxial cell fate specification	2.74E-03
62	GO:0032876: negative regulation of DNA endoreduplication	2.74E-03
63	GO:0080110: sporopollenin biosynthetic process	2.74E-03
64	GO:0030041: actin filament polymerization	2.74E-03
65	GO:0010236: plastoquinone biosynthetic process	2.74E-03
66	GO:0045038: protein import into chloroplast thylakoid membrane	2.74E-03
67	GO:0009958: positive gravitropism	3.01E-03
68	GO:0009658: chloroplast organization	3.14E-03
69	GO:0048316: seed development	3.31E-03
70	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.38E-03
71	GO:0009959: negative gravitropism	3.38E-03
72	GO:0016554: cytidine to uridine editing	3.38E-03
73	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	3.38E-03
74	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	3.38E-03
75	GO:0016458: gene silencing	3.38E-03
76	GO:0042372: phylloquinone biosynthetic process	4.06E-03
77	GO:1901259: chloroplast rRNA processing	4.06E-03
78	GO:0009828: plant-type cell wall loosening	4.50E-03
79	GO:0048528: post-embryonic root development	4.80E-03
80	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	4.80E-03
81	GO:0006400: tRNA modification	4.80E-03
82	GO:0051510: regulation of unidimensional cell growth	4.80E-03
83	GO:0042255: ribosome assembly	5.57E-03
84	GO:0032875: regulation of DNA endoreduplication	5.57E-03
85	GO:0045010: actin nucleation	5.57E-03
86	GO:0010492: maintenance of shoot apical meristem identity	5.57E-03
87	GO:0015995: chlorophyll biosynthetic process	6.33E-03
88	GO:0071482: cellular response to light stimulus	6.39E-03
89	GO:0019430: removal of superoxide radicals	6.39E-03
90	GO:0009657: plastid organization	6.39E-03
91	GO:0032544: plastid translation	6.39E-03
92	GO:0090305: nucleic acid phosphodiester bond hydrolysis	7.24E-03
93	GO:0010206: photosystem II repair	7.24E-03
94	GO:2000024: regulation of leaf development	7.24E-03
95	GO:0048507: meristem development	7.24E-03
96	GO:0000723: telomere maintenance	8.14E-03
97	GO:0042761: very long-chain fatty acid biosynthetic process	8.14E-03
98	GO:1900865: chloroplast RNA modification	8.14E-03
99	GO:0048354: mucilage biosynthetic process involved in seed coat development	8.14E-03
100	GO:0010380: regulation of chlorophyll biosynthetic process	8.14E-03
101	GO:0006865: amino acid transport	8.51E-03
102	GO:0006949: syncytium formation	9.07E-03
103	GO:0006259: DNA metabolic process	9.07E-03
104	GO:0006535: cysteine biosynthetic process from serine	9.07E-03
105	GO:0030422: production of siRNA involved in RNA interference	9.07E-03
106	GO:0048829: root cap development	9.07E-03
107	GO:0006816: calcium ion transport	1.00E-02
108	GO:0006265: DNA topological change	1.00E-02
109	GO:0043085: positive regulation of catalytic activity	1.00E-02
110	GO:0006415: translational termination	1.00E-02
111	GO:1903507: negative regulation of nucleic acid-templated transcription	1.00E-02
112	GO:0006352: DNA-templated transcription, initiation	1.00E-02
113	GO:0048765: root hair cell differentiation	1.00E-02
114	GO:0006839: mitochondrial transport	1.02E-02
115	GO:0010582: floral meristem determinacy	1.11E-02
116	GO:0006094: gluconeogenesis	1.21E-02
117	GO:0030036: actin cytoskeleton organization	1.21E-02
118	GO:0090351: seedling development	1.43E-02
119	GO:0009664: plant-type cell wall organization	1.45E-02
120	GO:0010025: wax biosynthetic process	1.54E-02
121	GO:0019344: cysteine biosynthetic process	1.66E-02
122	GO:0009944: polarity specification of adaxial/abaxial axis	1.66E-02
123	GO:0051017: actin filament bundle assembly	1.66E-02
124	GO:0006289: nucleotide-excision repair	1.66E-02
125	GO:0006417: regulation of translation	1.72E-02
126	GO:0008299: isoprenoid biosynthetic process	1.78E-02
127	GO:0006418: tRNA aminoacylation for protein translation	1.78E-02
128	GO:0006096: glycolytic process	1.84E-02
129	GO:0010431: seed maturation	1.91E-02
130	GO:0006306: DNA methylation	1.91E-02
131	GO:0003333: amino acid transmembrane transport	1.91E-02
132	GO:0015992: proton transport	1.91E-02
133	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.93E-02
134	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.03E-02
135	GO:0035428: hexose transmembrane transport	2.03E-02
136	GO:0006396: RNA processing	2.28E-02
137	GO:0010584: pollen exine formation	2.29E-02
138	GO:0006284: base-excision repair	2.29E-02
139	GO:0019722: calcium-mediated signaling	2.29E-02
140	GO:0000271: polysaccharide biosynthetic process	2.57E-02
141	GO:0008033: tRNA processing	2.57E-02
142	GO:0034220: ion transmembrane transport	2.57E-02
143	GO:0010087: phloem or xylem histogenesis	2.57E-02
144	GO:0006342: chromatin silencing	2.71E-02
145	GO:0045489: pectin biosynthetic process	2.71E-02
146	GO:0010154: fruit development	2.71E-02
147	GO:0048868: pollen tube development	2.71E-02
148	GO:0046323: glucose import	2.71E-02
149	GO:0007059: chromosome segregation	2.85E-02
150	GO:0007018: microtubule-based movement	2.85E-02
151	GO:0008654: phospholipid biosynthetic process	3.00E-02
152	GO:0006397: mRNA processing	3.19E-02
153	GO:0009630: gravitropism	3.30E-02
154	GO:0016032: viral process	3.30E-02
155	GO:0032502: developmental process	3.30E-02
156	GO:0010090: trichome morphogenesis	3.45E-02
157	GO:0006914: autophagy	3.61E-02
158	GO:0007267: cell-cell signaling	3.77E-02
159	GO:0046686: response to cadmium ion	3.83E-02
160	GO:0009451: RNA modification	3.91E-02
161	GO:0051607: defense response to virus	3.92E-02
162	GO:0016126: sterol biosynthetic process	4.09E-02
163	GO:0010027: thylakoid membrane organization	4.09E-02
164	GO:0009816: defense response to bacterium, incompatible interaction	4.25E-02
165	GO:0007166: cell surface receptor signaling pathway	4.37E-02
166	GO:0008380: RNA splicing	4.56E-02
167	GO:0016311: dephosphorylation	4.76E-02
168	GO:0009817: defense response to fungus, incompatible interaction	4.93E-02
169	GO:0048481: plant ovule development	4.93E-02
170	GO:0018298: protein-chromophore linkage	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
2	GO:0005048: signal sequence binding	0.00E+00
3	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
4	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
5	GO:0010356: homogentisate geranylgeranyltransferase activity	0.00E+00
6	GO:0010357: homogentisate solanesyltransferase activity	0.00E+00
7	GO:0004561: alpha-N-acetylglucosaminidase activity	0.00E+00
8	GO:0050613: delta14-sterol reductase activity	0.00E+00
9	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
10	GO:0046905: phytoene synthase activity	0.00E+00
11	GO:0010355: homogentisate farnesyltransferase activity	0.00E+00
12	GO:0001872: (1->3)-beta-D-glucan binding	3.55E-05
13	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	3.14E-04
14	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	3.14E-04
15	GO:0003881: CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity	3.14E-04
16	GO:0004813: alanine-tRNA ligase activity	3.14E-04
17	GO:0005290: L-histidine transmembrane transporter activity	3.14E-04
18	GO:0051996: squalene synthase activity	3.14E-04
19	GO:0004612: phosphoenolpyruvate carboxykinase (ATP) activity	3.14E-04
20	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.14E-04
21	GO:0004830: tryptophan-tRNA ligase activity	3.14E-04
22	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	3.14E-04
23	GO:0003723: RNA binding	4.87E-04
24	GO:0004766: spermidine synthase activity	6.87E-04
25	GO:0000064: L-ornithine transmembrane transporter activity	6.87E-04
26	GO:0004802: transketolase activity	6.87E-04
27	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	6.87E-04
28	GO:0050017: L-3-cyanoalanine synthase activity	6.87E-04
29	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	7.29E-04
30	GO:0005262: calcium channel activity	9.84E-04
31	GO:0016765: transferase activity, transferring alkyl or aryl (other than methyl) groups	1.11E-03
32	GO:0003913: DNA photolyase activity	1.11E-03
33	GO:0004148: dihydrolipoyl dehydrogenase activity	1.11E-03
34	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.11E-03
35	GO:0070402: NADPH binding	1.11E-03
36	GO:0015189: L-lysine transmembrane transporter activity	1.60E-03
37	GO:0043047: single-stranded telomeric DNA binding	1.60E-03
38	GO:0009678: hydrogen-translocating pyrophosphatase activity	1.60E-03
39	GO:0015181: arginine transmembrane transporter activity	1.60E-03
40	GO:0016149: translation release factor activity, codon specific	1.60E-03
41	GO:0035197: siRNA binding	1.60E-03
42	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.60E-03
43	GO:0004300: enoyl-CoA hydratase activity	1.60E-03
44	GO:0001053: plastid sigma factor activity	2.14E-03
45	GO:0010011: auxin binding	2.14E-03
46	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	2.14E-03
47	GO:0016987: sigma factor activity	2.14E-03
48	GO:0010328: auxin influx transmembrane transporter activity	2.14E-03
49	GO:0070628: proteasome binding	2.14E-03
50	GO:0008725: DNA-3-methyladenine glycosylase activity	2.74E-03
51	GO:0003785: actin monomer binding	2.74E-03
52	GO:0005471: ATP:ADP antiporter activity	2.74E-03
53	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	2.74E-03
54	GO:0031593: polyubiquitin binding	3.38E-03
55	GO:0004124: cysteine synthase activity	4.06E-03
56	GO:0004017: adenylate kinase activity	4.06E-03
57	GO:0004656: procollagen-proline 4-dioxygenase activity	4.06E-03
58	GO:0042162: telomeric DNA binding	4.80E-03
59	GO:0004427: inorganic diphosphatase activity	4.80E-03
60	GO:0009881: photoreceptor activity	4.80E-03
61	GO:0008312: 7S RNA binding	5.57E-03
62	GO:0043022: ribosome binding	5.57E-03
63	GO:0030247: polysaccharide binding	6.33E-03
64	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	6.39E-03
65	GO:0003747: translation release factor activity	7.24E-03
66	GO:0005096: GTPase activator activity	7.37E-03
67	GO:0004743: pyruvate kinase activity	8.14E-03
68	GO:0030955: potassium ion binding	8.14E-03
69	GO:0008047: enzyme activator activity	9.07E-03
70	GO:0004161: dimethylallyltranstransferase activity	1.00E-02
71	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.00E-02
72	GO:0004521: endoribonuclease activity	1.11E-02
73	GO:0000049: tRNA binding	1.11E-02
74	GO:0008266: poly(U) RNA binding	1.32E-02
75	GO:0031418: L-ascorbic acid binding	1.66E-02
76	GO:0043130: ubiquitin binding	1.66E-02
77	GO:0005528: FK506 binding	1.66E-02
78	GO:0003714: transcription corepressor activity	1.66E-02
79	GO:0015171: amino acid transmembrane transporter activity	1.72E-02
80	GO:0051087: chaperone binding	1.78E-02
81	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	2.03E-02
82	GO:0030570: pectate lyase activity	2.16E-02
83	GO:0003727: single-stranded RNA binding	2.29E-02
84	GO:0004812: aminoacyl-tRNA ligase activity	2.43E-02
85	GO:0008536: Ran GTPase binding	2.71E-02
86	GO:0019843: rRNA binding	2.78E-02
87	GO:0004791: thioredoxin-disulfide reductase activity	2.85E-02
88	GO:0016853: isomerase activity	2.85E-02
89	GO:0005355: glucose transmembrane transporter activity	2.85E-02
90	GO:0050662: coenzyme binding	2.85E-02
91	GO:0010181: FMN binding	2.85E-02
92	GO:0019901: protein kinase binding	3.00E-02
93	GO:0004252: serine-type endopeptidase activity	3.08E-02
94	GO:0030170: pyridoxal phosphate binding	3.08E-02
95	GO:0004518: nuclease activity	3.30E-02
96	GO:0008565: protein transporter activity	3.32E-02
97	GO:0004519: endonuclease activity	3.35E-02
98	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.45E-02
99	GO:0051015: actin filament binding	3.45E-02
100	GO:0003729: mRNA binding	3.55E-02
101	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.57E-02
102	GO:0003684: damaged DNA binding	3.61E-02
103	GO:0008483: transaminase activity	3.77E-02
104	GO:0016722: oxidoreductase activity, oxidizing metal ions	3.77E-02
105	GO:0016597: amino acid binding	3.92E-02
106	GO:0015250: water channel activity	4.09E-02
107	GO:0008236: serine-type peptidase activity	4.76E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	4.32E-19
2	GO:0009570: chloroplast stroma	5.08E-08
3	GO:0030529: intracellular ribonucleoprotein complex	6.55E-05
4	GO:0009535: chloroplast thylakoid membrane	4.77E-04
5	GO:0009941: chloroplast envelope	5.74E-04
6	GO:0005697: telomerase holoenzyme complex	6.87E-04
7	GO:0080085: signal recognition particle, chloroplast targeting	6.87E-04
8	GO:0005578: proteinaceous extracellular matrix	9.84E-04
9	GO:0032432: actin filament bundle	1.60E-03
10	GO:0005719: nuclear euchromatin	1.60E-03
11	GO:0009579: thylakoid	2.10E-03
12	GO:0030663: COPI-coated vesicle membrane	2.14E-03
13	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	2.14E-03
14	GO:0046658: anchored component of plasma membrane	2.48E-03
15	GO:0031209: SCAR complex	3.38E-03
16	GO:0031969: chloroplast membrane	4.37E-03
17	GO:0042807: central vacuole	4.80E-03
18	GO:0009986: cell surface	4.80E-03
19	GO:0000784: nuclear chromosome, telomeric region	6.39E-03
20	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	6.39E-03
21	GO:0000326: protein storage vacuole	6.39E-03
22	GO:0005759: mitochondrial matrix	7.18E-03
23	GO:0005680: anaphase-promoting complex	7.24E-03
24	GO:0005886: plasma membrane	7.68E-03
25	GO:0015030: Cajal body	8.14E-03
26	GO:0016604: nuclear body	8.14E-03
27	GO:0030125: clathrin vesicle coat	9.07E-03
28	GO:0005884: actin filament	1.00E-02
29	GO:0031977: thylakoid lumen	1.06E-02
30	GO:0000311: plastid large ribosomal subunit	1.11E-02
31	GO:0031225: anchored component of membrane	1.17E-02
32	GO:0009574: preprophase band	1.21E-02
33	GO:0005938: cell cortex	1.21E-02
34	GO:0030176: integral component of endoplasmic reticulum membrane	1.43E-02
35	GO:0042651: thylakoid membrane	1.78E-02
36	GO:0009532: plastid stroma	1.91E-02
37	GO:0015629: actin cytoskeleton	2.16E-02
38	GO:0009706: chloroplast inner membrane	2.22E-02
39	GO:0005871: kinesin complex	2.43E-02
40	GO:0009536: plastid	2.58E-02
41	GO:0010287: plastoglobule	2.63E-02
42	GO:0009543: chloroplast thylakoid lumen	2.78E-02
43	GO:0005623: cell	2.85E-02
44	GO:0031965: nuclear membrane	3.00E-02
45	GO:0009295: nucleoid	3.77E-02
46	GO:0009705: plant-type vacuole membrane	3.83E-02