Gene: AT3G51950
     

Gene description


TAIR ID: AT3G51950

Short description: Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein

Pathogen responsiveness: 0.24

General responsiveness: -1.64

GO biological process


biological_process


GO cellular component


cellular_component


GO molecular function


nuclease activity, DNA binding, metal ion binding


Protein domain


PfamPF00076, RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
PfamPF00642, Zinc finger C-x8-C-x5-C-x3-H type (and similar)
SMARTSM00356, ZnF_C3H1
SMARTSM00360, RRM

Metabolic pathway


Not involved in metabolic pathway


KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT5G56110, AT5G13790, AT1G24260, AT5G61850

Target:
none

Protein-protein interaction network


No Interactor


Differentially expressed condition


28 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE17464Laer, controlLaer, Alternaria brassicicola 3 d1.542.55E-04
GSE17464Laer, controlLaer, Flg22 2 h-1.611.43E-04
GSE17464Penta, controlPenta, Alternaria brassicicola 3 d1.821.53E-05
GSE17500Col, 35S:AFB1, control 0 hCol, 35S:AFB1, PstDC3000 24 h-1.752.94E-04
GSE17500Col, WT, control 0 hCol, WT, PstDC3000 24 h-1.791.57E-04
GSE17500Col, miR393, control 0 hCol, miR393, PstDC3000 24 h-1.683.45E-04
GSE18978Col, WT, control 24 hCol, WT, PsmES4326 24 h-2.841.50E-09
GSE45214Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 4 h-1.842.60E-11
GSE45214Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h-1.573.09E-10
GSE45214Col, med16, PstDC3000 AvrRpt2 0 hCol, med16, PstDC3000 AvrRpt2 4 h-2.644.96E-14
GSE52979Col, WT, acetoneCol, WT, acetone flg22_2 h-1.761.41E-04
GSE52979Col, WT, oxo_C14_HSLCol, WT, oxo_C14_HSL flg22_2 h-2.101.83E-05
GSE5520Col, WT, control 10 hCol, WT, Cor- 10 h-2.443.63E-05
GSE5520Col, WT, control 7 hCol, WT, PstDC3000 7 h-2.911.32E-07
GSE56094Col, WT, control 10 hCol, WT, PstDC3000 10 h-2.462.24E-15
GSE56094Col, WT, control 10 hCol, WT, hrpA- 10 h-1.621.70E-07
GSE56094Col, WT, control 11 hCol, WT, PstDC3000 11 h-2.392.88E-14
GSE56094Col, WT, control 11 hCol, WT, hrpA- 11 h-1.591.78E-07
GSE56094Col, WT, control 12 hCol, WT, PstDC3000 12 h-2.236.09E-13
GSE56094Col, WT, control 13 hCol, WT, PstDC3000 13 h-2.223.52E-13
GSE56094Col, WT, control 8 hCol, WT, PstDC3000 8 h-1.624.17E-08
GSE56094Col, WT, control 8 hCol, WT, hrpA- 8 h-1.535.22E-07
GSE58954Col, WT, Psm AvrRpt2 0 hCol, WT, Psm AvrRpt2 6 h-3.261.08E-03
GSE6176Col, WT, control 12 hCol, WT, PstDC3000 12 h-1.642.91E-06
GSE9674Ws-4, AtMYB30 ox, controlWs-4, AtMYB30 ox, Xanthomonas strain Xcc147 2-4 h-2.037.60E-04
GSE9674Ws-4, AtMYB30 ox, controlWs-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h-2.298.84E-04
GSE9674Ws-4, WT, controlWs-4, WT, Xanthomonas strain Xcc147 2-4 h-1.575.31E-03
GSE9674Ws-4, WT, controlWs-4, WT, Xanthomonas strain Xcc147 6 h-2.201.33E-03






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