co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G51950

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042493: response to drug	0.00E+00
2	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
3	GO:0090470: shoot organ boundary specification	0.00E+00
4	GO:0090627: plant epidermal cell differentiation	0.00E+00
5	GO:0015995: chlorophyll biosynthetic process	2.72E-05
6	GO:0010311: lateral root formation	3.68E-05
7	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.90E-05
8	GO:0009913: epidermal cell differentiation	7.23E-05
9	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	8.51E-05
10	GO:1901259: chloroplast rRNA processing	1.00E-04
11	GO:0042335: cuticle development	1.22E-04
12	GO:0009958: positive gravitropism	1.37E-04
13	GO:0042759: long-chain fatty acid biosynthetic process	2.04E-04
14	GO:0042371: vitamin K biosynthetic process	2.04E-04
15	GO:0034337: RNA folding	2.04E-04
16	GO:0032544: plastid translation	2.11E-04
17	GO:0009828: plant-type cell wall loosening	2.41E-04
18	GO:0010206: photosystem II repair	2.57E-04
19	GO:0046856: phosphatidylinositol dephosphorylation	4.16E-04
20	GO:0009416: response to light stimulus	4.20E-04
21	GO:0010541: acropetal auxin transport	4.57E-04
22	GO:0001736: establishment of planar polarity	4.57E-04
23	GO:0006898: receptor-mediated endocytosis	4.57E-04
24	GO:0034755: iron ion transmembrane transport	4.57E-04
25	GO:0006518: peptide metabolic process	7.44E-04
26	GO:0016045: detection of bacterium	7.44E-04
27	GO:0010359: regulation of anion channel activity	7.44E-04
28	GO:0046168: glycerol-3-phosphate catabolic process	7.44E-04
29	GO:0006013: mannose metabolic process	7.44E-04
30	GO:0010160: formation of animal organ boundary	7.44E-04
31	GO:0090391: granum assembly	7.44E-04
32	GO:0010025: wax biosynthetic process	7.58E-04
33	GO:0051017: actin filament bundle assembly	8.38E-04
34	GO:1901332: negative regulation of lateral root development	1.06E-03
35	GO:0009413: response to flooding	1.06E-03
36	GO:0010371: regulation of gibberellin biosynthetic process	1.06E-03
37	GO:0051513: regulation of monopolar cell growth	1.06E-03
38	GO:0051639: actin filament network formation	1.06E-03
39	GO:0010239: chloroplast mRNA processing	1.06E-03
40	GO:0080170: hydrogen peroxide transmembrane transport	1.06E-03
41	GO:0043481: anthocyanin accumulation in tissues in response to UV light	1.06E-03
42	GO:0006072: glycerol-3-phosphate metabolic process	1.06E-03
43	GO:0009650: UV protection	1.06E-03
44	GO:0009664: plant-type cell wall organization	1.07E-03
45	GO:0009734: auxin-activated signaling pathway	1.19E-03
46	GO:0048443: stamen development	1.30E-03
47	GO:0051764: actin crosslink formation	1.41E-03
48	GO:0045727: positive regulation of translation	1.41E-03
49	GO:0030104: water homeostasis	1.41E-03
50	GO:0080022: primary root development	1.51E-03
51	GO:0034220: ion transmembrane transport	1.51E-03
52	GO:0009735: response to cytokinin	1.52E-03
53	GO:0010305: leaf vascular tissue pattern formation	1.63E-03
54	GO:0006564: L-serine biosynthetic process	1.80E-03
55	GO:0010236: plastoquinone biosynthetic process	1.80E-03
56	GO:0010438: cellular response to sulfur starvation	1.80E-03
57	GO:0015979: photosynthesis	2.05E-03
58	GO:0009733: response to auxin	2.15E-03
59	GO:0003006: developmental process involved in reproduction	2.21E-03
60	GO:0009759: indole glucosinolate biosynthetic process	2.21E-03
61	GO:0006751: glutathione catabolic process	2.21E-03
62	GO:0000470: maturation of LSU-rRNA	2.21E-03
63	GO:0060918: auxin transport	2.21E-03
64	GO:0042372: phylloquinone biosynthetic process	2.66E-03
65	GO:0010027: thylakoid membrane organization	2.89E-03
66	GO:0016042: lipid catabolic process	2.91E-03
67	GO:1900057: positive regulation of leaf senescence	3.13E-03
68	GO:0009772: photosynthetic electron transport in photosystem II	3.13E-03
69	GO:0010196: nonphotochemical quenching	3.13E-03
70	GO:0009627: systemic acquired resistance	3.22E-03
71	GO:0006633: fatty acid biosynthetic process	3.24E-03
72	GO:0031540: regulation of anthocyanin biosynthetic process	3.63E-03
73	GO:0016559: peroxisome fission	3.63E-03
74	GO:0008610: lipid biosynthetic process	3.63E-03
75	GO:0006353: DNA-templated transcription, termination	3.63E-03
76	GO:0045490: pectin catabolic process	3.65E-03
77	GO:0007623: circadian rhythm	3.65E-03
78	GO:0034765: regulation of ion transmembrane transport	4.70E-03
79	GO:0009051: pentose-phosphate shunt, oxidative branch	4.70E-03
80	GO:0009245: lipid A biosynthetic process	4.70E-03
81	GO:0010205: photoinhibition	5.27E-03
82	GO:0009638: phototropism	5.27E-03
83	GO:0006535: cysteine biosynthetic process from serine	5.86E-03
84	GO:0048829: root cap development	5.86E-03
85	GO:0006949: syncytium formation	5.86E-03
86	GO:0009826: unidimensional cell growth	6.05E-03
87	GO:0009640: photomorphogenesis	6.13E-03
88	GO:0009926: auxin polar transport	6.13E-03
89	GO:0006468: protein phosphorylation	6.44E-03
90	GO:1903507: negative regulation of nucleic acid-templated transcription	6.48E-03
91	GO:0006879: cellular iron ion homeostasis	6.48E-03
92	GO:0048765: root hair cell differentiation	6.48E-03
93	GO:0010015: root morphogenesis	6.48E-03
94	GO:0000038: very long-chain fatty acid metabolic process	6.48E-03
95	GO:0009773: photosynthetic electron transport in photosystem I	6.48E-03
96	GO:0052544: defense response by callose deposition in cell wall	6.48E-03
97	GO:0008285: negative regulation of cell proliferation	6.48E-03
98	GO:0008361: regulation of cell size	7.12E-03
99	GO:0002213: defense response to insect	7.12E-03
100	GO:0016024: CDP-diacylglycerol biosynthetic process	7.12E-03
101	GO:0010152: pollen maturation	7.12E-03
102	GO:0010628: positive regulation of gene expression	7.78E-03
103	GO:0006006: glucose metabolic process	7.78E-03
104	GO:0010229: inflorescence development	7.78E-03
105	GO:0009718: anthocyanin-containing compound biosynthetic process	7.78E-03
106	GO:0010588: cotyledon vascular tissue pattern formation	7.78E-03
107	GO:2000012: regulation of auxin polar transport	7.78E-03
108	GO:0010102: lateral root morphogenesis	7.78E-03
109	GO:0009785: blue light signaling pathway	7.78E-03
110	GO:0030048: actin filament-based movement	7.78E-03
111	GO:0006364: rRNA processing	8.27E-03
112	GO:0080167: response to karrikin	8.35E-03
113	GO:0010540: basipetal auxin transport	8.47E-03
114	GO:0048467: gynoecium development	8.47E-03
115	GO:0010143: cutin biosynthetic process	8.47E-03
116	GO:0010020: chloroplast fission	8.47E-03
117	GO:0071732: cellular response to nitric oxide	9.17E-03
118	GO:0010030: positive regulation of seed germination	9.17E-03
119	GO:0006636: unsaturated fatty acid biosynthetic process	9.90E-03
120	GO:0042023: DNA endoreduplication	9.90E-03
121	GO:0006833: water transport	9.90E-03
122	GO:0000162: tryptophan biosynthetic process	9.90E-03
123	GO:2000377: regulation of reactive oxygen species metabolic process	1.06E-02
124	GO:0019344: cysteine biosynthetic process	1.06E-02
125	GO:0010073: meristem maintenance	1.14E-02
126	GO:0007017: microtubule-based process	1.14E-02
127	GO:0009624: response to nematode	1.18E-02
128	GO:0003333: amino acid transmembrane transport	1.22E-02
129	GO:0005975: carbohydrate metabolic process	1.27E-02
130	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.30E-02
131	GO:0009411: response to UV	1.38E-02
132	GO:0071369: cellular response to ethylene stimulus	1.38E-02
133	GO:0040007: growth	1.38E-02
134	GO:0010227: floral organ abscission	1.38E-02
135	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.55E-02
136	GO:0010087: phloem or xylem histogenesis	1.64E-02
137	GO:0042631: cellular response to water deprivation	1.64E-02
138	GO:0042391: regulation of membrane potential	1.64E-02
139	GO:0071472: cellular response to salt stress	1.73E-02
140	GO:0048825: cotyledon development	1.92E-02
141	GO:0000302: response to reactive oxygen species	2.01E-02
142	GO:0016032: viral process	2.11E-02
143	GO:0030163: protein catabolic process	2.21E-02
144	GO:0071281: cellular response to iron ion	2.21E-02
145	GO:0009739: response to gibberellin	2.29E-02
146	GO:0009567: double fertilization forming a zygote and endosperm	2.30E-02
147	GO:0010252: auxin homeostasis	2.30E-02
148	GO:0009639: response to red or far red light	2.30E-02
149	GO:0071805: potassium ion transmembrane transport	2.41E-02
150	GO:0009658: chloroplast organization	3.17E-02
151	GO:0045893: positive regulation of transcription, DNA-templated	3.35E-02
152	GO:0010218: response to far red light	3.38E-02
153	GO:0007568: aging	3.50E-02
154	GO:0048527: lateral root development	3.50E-02
155	GO:0006865: amino acid transport	3.62E-02
156	GO:0016051: carbohydrate biosynthetic process	3.74E-02
157	GO:0009637: response to blue light	3.74E-02
158	GO:0034599: cellular response to oxidative stress	3.86E-02
159	GO:0030001: metal ion transport	4.10E-02
160	GO:0010114: response to red light	4.47E-02
161	GO:0008283: cell proliferation	4.47E-02
162	GO:0006855: drug transmembrane transport	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0047661: amino-acid racemase activity	0.00E+00
2	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
3	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
4	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
5	GO:0038198: auxin receptor activity	0.00E+00
6	GO:0005528: FK506 binding	1.18E-06
7	GO:0019843: rRNA binding	2.92E-06
8	GO:0016851: magnesium chelatase activity	1.66E-05
9	GO:0010011: auxin binding	3.05E-05
10	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	7.23E-05
11	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.13E-04
12	GO:0045485: omega-6 fatty acid desaturase activity	2.04E-04
13	GO:0016788: hydrolase activity, acting on ester bonds	2.21E-04
14	GO:0003839: gamma-glutamylcyclotransferase activity	4.57E-04
15	GO:0004617: phosphoglycerate dehydrogenase activity	4.57E-04
16	GO:0000822: inositol hexakisphosphate binding	4.57E-04
17	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	4.78E-04
18	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	7.44E-04
19	GO:0001872: (1->3)-beta-D-glucan binding	1.06E-03
20	GO:0004445: inositol-polyphosphate 5-phosphatase activity	1.06E-03
21	GO:0030570: pectate lyase activity	1.20E-03
22	GO:0004659: prenyltransferase activity	1.41E-03
23	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.41E-03
24	GO:0010328: auxin influx transmembrane transporter activity	1.41E-03
25	GO:0052689: carboxylic ester hydrolase activity	1.96E-03
26	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.21E-03
27	GO:0004130: cytochrome-c peroxidase activity	2.21E-03
28	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.21E-03
29	GO:0031177: phosphopantetheine binding	2.21E-03
30	GO:0051015: actin filament binding	2.28E-03
31	GO:0000035: acyl binding	2.66E-03
32	GO:0004559: alpha-mannosidase activity	2.66E-03
33	GO:0005242: inward rectifier potassium channel activity	2.66E-03
34	GO:0004124: cysteine synthase activity	2.66E-03
35	GO:0016829: lyase activity	2.68E-03
36	GO:0015250: water channel activity	2.89E-03
37	GO:0008236: serine-type peptidase activity	3.58E-03
38	GO:0043022: ribosome binding	3.63E-03
39	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	3.63E-03
40	GO:0005515: protein binding	3.78E-03
41	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.94E-03
42	GO:0042802: identical protein binding	4.94E-03
43	GO:0005381: iron ion transmembrane transporter activity	5.27E-03
44	GO:0004674: protein serine/threonine kinase activity	5.58E-03
45	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	5.86E-03
46	GO:0015020: glucuronosyltransferase activity	5.86E-03
47	GO:0051287: NAD binding	7.43E-03
48	GO:0031072: heat shock protein binding	7.78E-03
49	GO:0004565: beta-galactosidase activity	7.78E-03
50	GO:0010329: auxin efflux transmembrane transporter activity	7.78E-03
51	GO:0003774: motor activity	8.47E-03
52	GO:0008266: poly(U) RNA binding	8.47E-03
53	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	9.90E-03
54	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	9.90E-03
55	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	9.90E-03
56	GO:0003714: transcription corepressor activity	1.06E-02
57	GO:0004871: signal transducer activity	1.11E-02
58	GO:0016746: transferase activity, transferring acyl groups	1.22E-02
59	GO:0004707: MAP kinase activity	1.22E-02
60	GO:0005524: ATP binding	1.34E-02
61	GO:0003756: protein disulfide isomerase activity	1.47E-02
62	GO:0005249: voltage-gated potassium channel activity	1.64E-02
63	GO:0004252: serine-type endopeptidase activity	1.64E-02
64	GO:0030551: cyclic nucleotide binding	1.64E-02
65	GO:0008080: N-acetyltransferase activity	1.73E-02
66	GO:0050662: coenzyme binding	1.82E-02
67	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.91E-02
68	GO:0016791: phosphatase activity	2.30E-02
69	GO:0005200: structural constituent of cytoskeleton	2.41E-02
70	GO:0016597: amino acid binding	2.51E-02
71	GO:0008375: acetylglucosaminyltransferase activity	2.83E-02
72	GO:0030247: polysaccharide binding	2.94E-02
73	GO:0004222: metalloendopeptidase activity	3.38E-02
74	GO:0004672: protein kinase activity	3.69E-02
75	GO:0003746: translation elongation factor activity	3.74E-02
76	GO:0030246: carbohydrate binding	4.07E-02
77	GO:0050661: NADP binding	4.10E-02
78	GO:0043621: protein self-association	4.73E-02
79	GO:0015293: symporter activity	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0009543: chloroplast thylakoid lumen	2.07E-10
2	GO:0009534: chloroplast thylakoid	1.39E-09
3	GO:0009507: chloroplast	3.57E-09
4	GO:0009941: chloroplast envelope	5.55E-08
5	GO:0009570: chloroplast stroma	8.12E-08
6	GO:0009535: chloroplast thylakoid membrane	2.38E-07
7	GO:0005618: cell wall	8.67E-07
8	GO:0031977: thylakoid lumen	4.08E-06
9	GO:0010007: magnesium chelatase complex	7.24E-06
10	GO:0005886: plasma membrane	3.71E-05
11	GO:0048046: apoplast	8.23E-05
12	GO:0009579: thylakoid	1.28E-04
13	GO:0009515: granal stacked thylakoid	2.04E-04
14	GO:0043674: columella	2.04E-04
15	GO:0016020: membrane	5.59E-04
16	GO:0009509: chromoplast	7.44E-04
17	GO:0009505: plant-type cell wall	7.66E-04
18	GO:0009331: glycerol-3-phosphate dehydrogenase complex	1.06E-03
19	GO:0015630: microtubule cytoskeleton	1.06E-03
20	GO:0032432: actin filament bundle	1.06E-03
21	GO:0005840: ribosome	1.88E-03
22	GO:0005576: extracellular region	2.24E-03
23	GO:0009986: cell surface	3.13E-03
24	GO:0009533: chloroplast stromal thylakoid	3.13E-03
25	GO:0042807: central vacuole	3.13E-03
26	GO:0019005: SCF ubiquitin ligase complex	3.76E-03
27	GO:0008180: COP9 signalosome	4.70E-03
28	GO:0016459: myosin complex	5.86E-03
29	GO:0090404: pollen tube tip	6.48E-03
30	GO:0005884: actin filament	6.48E-03
31	GO:0032040: small-subunit processome	7.12E-03
32	GO:0005578: proteinaceous extracellular matrix	7.78E-03
33	GO:0030095: chloroplast photosystem II	8.47E-03
34	GO:0009654: photosystem II oxygen evolving complex	1.14E-02
35	GO:0009706: chloroplast inner membrane	1.18E-02
36	GO:0015629: actin cytoskeleton	1.38E-02
37	GO:0005768: endosome	1.80E-02
38	GO:0009523: photosystem II	1.92E-02
39	GO:0019898: extrinsic component of membrane	1.92E-02
40	GO:0005887: integral component of plasma membrane	2.02E-02
41	GO:0009506: plasmodesma	2.40E-02
42	GO:0009707: chloroplast outer membrane	3.16E-02
43	GO:0000151: ubiquitin ligase complex	3.16E-02
44	GO:0031969: chloroplast membrane	3.92E-02
45	GO:0005856: cytoskeleton	4.86E-02
46	GO:0031225: anchored component of membrane	4.88E-02