co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G51950

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010423: negative regulation of brassinosteroid biosynthetic process	0.00E+00
2	GO:0071000: response to magnetism	0.00E+00
3	GO:0046460: neutral lipid biosynthetic process	0.00E+00
4	GO:0006907: pinocytosis	0.00E+00
5	GO:0015739: sialic acid transport	0.00E+00
6	GO:0009583: detection of light stimulus	0.00E+00
7	GO:0090470: shoot organ boundary specification	0.00E+00
8	GO:0010343: singlet oxygen-mediated programmed cell death	9.95E-07
9	GO:0010019: chloroplast-nucleus signaling pathway	5.62E-05
10	GO:0034971: histone H3-R17 methylation	1.42E-04
11	GO:0072387: flavin adenine dinucleotide metabolic process	1.42E-04
12	GO:0042371: vitamin K biosynthetic process	1.42E-04
13	GO:0034970: histone H3-R2 methylation	1.42E-04
14	GO:0034972: histone H3-R26 methylation	1.42E-04
15	GO:1902265: abscisic acid homeostasis	1.42E-04
16	GO:0015780: nucleotide-sugar transport	1.50E-04
17	GO:0010617: circadian regulation of calcium ion oscillation	3.25E-04
18	GO:0007154: cell communication	3.25E-04
19	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	3.25E-04
20	GO:0099402: plant organ development	3.25E-04
21	GO:0009257: 10-formyltetrahydrofolate biosynthetic process	3.25E-04
22	GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	3.25E-04
23	GO:0010024: phytochromobilin biosynthetic process	3.25E-04
24	GO:0010275: NAD(P)H dehydrogenase complex assembly	3.25E-04
25	GO:1901529: positive regulation of anion channel activity	3.25E-04
26	GO:0048255: mRNA stabilization	3.25E-04
27	GO:0009767: photosynthetic electron transport chain	3.27E-04
28	GO:0009150: purine ribonucleotide metabolic process	5.33E-04
29	GO:0031022: nuclear migration along microfilament	5.33E-04
30	GO:1902448: positive regulation of shade avoidance	5.33E-04
31	GO:1901672: positive regulation of systemic acquired resistance	5.33E-04
32	GO:0033014: tetrapyrrole biosynthetic process	7.63E-04
33	GO:0009113: purine nucleobase biosynthetic process	7.63E-04
34	GO:1901332: negative regulation of lateral root development	7.63E-04
35	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	7.63E-04
36	GO:0010371: regulation of gibberellin biosynthetic process	7.63E-04
37	GO:1902476: chloride transmembrane transport	7.63E-04
38	GO:0009958: positive gravitropism	9.96E-04
39	GO:1902347: response to strigolactone	1.01E-03
40	GO:0009902: chloroplast relocation	1.01E-03
41	GO:0000304: response to singlet oxygen	1.28E-03
42	GO:0010117: photoprotection	1.28E-03
43	GO:0046283: anthocyanin-containing compound metabolic process	1.28E-03
44	GO:0016123: xanthophyll biosynthetic process	1.28E-03
45	GO:0060918: auxin transport	1.57E-03
46	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.57E-03
47	GO:1901371: regulation of leaf morphogenesis	1.57E-03
48	GO:0000741: karyogamy	1.57E-03
49	GO:0016126: sterol biosynthetic process	1.74E-03
50	GO:0009903: chloroplast avoidance movement	1.88E-03
51	GO:0010310: regulation of hydrogen peroxide metabolic process	1.88E-03
52	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.88E-03
53	GO:0034389: lipid particle organization	1.88E-03
54	GO:0007623: circadian rhythm	1.90E-03
55	GO:0006821: chloride transport	2.21E-03
56	GO:0051510: regulation of unidimensional cell growth	2.21E-03
57	GO:0009396: folic acid-containing compound biosynthetic process	2.21E-03
58	GO:0009704: de-etiolation	2.56E-03
59	GO:0048564: photosystem I assembly	2.56E-03
60	GO:0010928: regulation of auxin mediated signaling pathway	2.56E-03
61	GO:0009787: regulation of abscisic acid-activated signaling pathway	2.56E-03
62	GO:0009637: response to blue light	2.86E-03
63	GO:0022900: electron transport chain	2.93E-03
64	GO:0009658: chloroplast organization	3.30E-03
65	GO:0009821: alkaloid biosynthetic process	3.31E-03
66	GO:0046916: cellular transition metal ion homeostasis	3.31E-03
67	GO:0006783: heme biosynthetic process	3.31E-03
68	GO:0019432: triglyceride biosynthetic process	3.31E-03
69	GO:0009640: photomorphogenesis	3.68E-03
70	GO:0008356: asymmetric cell division	3.71E-03
71	GO:1900426: positive regulation of defense response to bacterium	3.71E-03
72	GO:0009638: phototropism	3.71E-03
73	GO:0006779: porphyrin-containing compound biosynthetic process	3.71E-03
74	GO:0035999: tetrahydrofolate interconversion	3.71E-03
75	GO:0008643: carbohydrate transport	3.98E-03
76	GO:0045036: protein targeting to chloroplast	4.12E-03
77	GO:0051555: flavonol biosynthetic process	4.12E-03
78	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.53E-03
79	GO:0043085: positive regulation of catalytic activity	4.55E-03
80	GO:0008285: negative regulation of cell proliferation	4.55E-03
81	GO:0006790: sulfur compound metabolic process	4.99E-03
82	GO:0045037: protein import into chloroplast stroma	4.99E-03
83	GO:0030048: actin filament-based movement	5.45E-03
84	GO:0010075: regulation of meristem growth	5.45E-03
85	GO:0009785: blue light signaling pathway	5.45E-03
86	GO:0006071: glycerol metabolic process	6.91E-03
87	GO:0006289: nucleotide-excision repair	7.42E-03
88	GO:2000377: regulation of reactive oxygen species metabolic process	7.42E-03
89	GO:0010073: meristem maintenance	7.95E-03
90	GO:0016226: iron-sulfur cluster assembly	9.05E-03
91	GO:0080092: regulation of pollen tube growth	9.05E-03
92	GO:0010227: floral organ abscission	9.62E-03
93	GO:0010118: stomatal movement	1.14E-02
94	GO:0010197: polar nucleus fusion	1.20E-02
95	GO:0009451: RNA modification	1.25E-02
96	GO:0042752: regulation of circadian rhythm	1.26E-02
97	GO:0009646: response to absence of light	1.26E-02
98	GO:0010228: vegetative to reproductive phase transition of meristem	1.28E-02
99	GO:0007264: small GTPase mediated signal transduction	1.46E-02
100	GO:0071805: potassium ion transmembrane transport	1.67E-02
101	GO:0006810: transport	1.72E-02
102	GO:0000910: cytokinesis	1.74E-02
103	GO:0005975: carbohydrate metabolic process	1.81E-02
104	GO:0010029: regulation of seed germination	1.88E-02
105	GO:0015995: chlorophyll biosynthetic process	2.03E-02
106	GO:0030244: cellulose biosynthetic process	2.19E-02
107	GO:0018298: protein-chromophore linkage	2.19E-02
108	GO:0000160: phosphorelay signal transduction system	2.26E-02
109	GO:0010218: response to far red light	2.34E-02
110	GO:0006811: ion transport	2.34E-02
111	GO:0046777: protein autophosphorylation	2.51E-02
112	GO:0030001: metal ion transport	2.84E-02
113	GO:0006839: mitochondrial transport	2.84E-02
114	GO:0010114: response to red light	3.10E-02
115	GO:0009644: response to high light intensity	3.28E-02
116	GO:0006260: DNA replication	3.55E-02
117	GO:0009664: plant-type cell wall organization	3.65E-02
118	GO:0009736: cytokinin-activated signaling pathway	3.83E-02
119	GO:0006813: potassium ion transport	3.83E-02
120	GO:0051603: proteolysis involved in cellular protein catabolic process	3.93E-02
121	GO:0009909: regulation of flower development	4.12E-02
122	GO:0006417: regulation of translation	4.12E-02
123	GO:0016567: protein ubiquitination	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0015136: sialic acid transmembrane transporter activity	0.00E+00
2	GO:0016636: oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor	0.00E+00
3	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
4	GO:0033947: mannosylglycoprotein endo-beta-mannosidase activity	0.00E+00
5	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
6	GO:0005456: CMP-N-acetylneuraminate transmembrane transporter activity	0.00E+00
7	GO:0050619: phytochromobilin:ferredoxin oxidoreductase activity	0.00E+00
8	GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity	0.00E+00
9	GO:0005338: nucleotide-sugar transmembrane transporter activity	7.52E-05
10	GO:0046906: tetrapyrrole binding	1.42E-04
11	GO:0004325: ferrochelatase activity	1.42E-04
12	GO:0004329: formate-tetrahydrofolate ligase activity	3.25E-04
13	GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity	3.25E-04
14	GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity	3.25E-04
15	GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity	3.25E-04
16	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	3.25E-04
17	GO:0004477: methenyltetrahydrofolate cyclohydrolase activity	3.25E-04
18	GO:0035241: protein-arginine omega-N monomethyltransferase activity	3.25E-04
19	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	3.70E-04
20	GO:0008469: histone-arginine N-methyltransferase activity	5.33E-04
21	GO:0004180: carboxypeptidase activity	5.33E-04
22	GO:0032947: protein complex scaffold	5.33E-04
23	GO:0004848: ureidoglycolate hydrolase activity	5.33E-04
24	GO:0019003: GDP binding	5.33E-04
25	GO:0009882: blue light photoreceptor activity	7.63E-04
26	GO:0047627: adenylylsulfatase activity	7.63E-04
27	GO:0000254: C-4 methylsterol oxidase activity	7.63E-04
28	GO:0016851: magnesium chelatase activity	7.63E-04
29	GO:0005253: anion channel activity	1.01E-03
30	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.01E-03
31	GO:0048038: quinone binding	1.22E-03
32	GO:0005247: voltage-gated chloride channel activity	1.57E-03
33	GO:0000293: ferric-chelate reductase activity	1.57E-03
34	GO:0004144: diacylglycerol O-acyltransferase activity	1.88E-03
35	GO:0008194: UDP-glycosyltransferase activity	2.19E-03
36	GO:0019899: enzyme binding	2.21E-03
37	GO:0046914: transition metal ion binding	2.93E-03
38	GO:0071949: FAD binding	3.31E-03
39	GO:0016844: strictosidine synthase activity	3.71E-03
40	GO:0016491: oxidoreductase activity	4.00E-03
41	GO:0004713: protein tyrosine kinase activity	4.12E-03
42	GO:0005089: Rho guanyl-nucleotide exchange factor activity	4.55E-03
43	GO:0004860: protein kinase inhibitor activity	4.55E-03
44	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	5.05E-03
45	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	6.04E-03
46	GO:0022857: transmembrane transporter activity	6.62E-03
47	GO:0003887: DNA-directed DNA polymerase activity	6.91E-03
48	GO:0051536: iron-sulfur cluster binding	7.42E-03
49	GO:0015079: potassium ion transmembrane transporter activity	7.95E-03
50	GO:0004176: ATP-dependent peptidase activity	8.49E-03
51	GO:0010181: FMN binding	1.26E-02
52	GO:0004518: nuclease activity	1.46E-02
53	GO:0000156: phosphorelay response regulator activity	1.53E-02
54	GO:0008237: metallopeptidase activity	1.67E-02
55	GO:0004672: protein kinase activity	1.72E-02
56	GO:0046982: protein heterodimerization activity	1.86E-02
57	GO:0030247: polysaccharide binding	2.03E-02
58	GO:0008236: serine-type peptidase activity	2.11E-02
59	GO:0004222: metalloendopeptidase activity	2.34E-02
60	GO:0050897: cobalt ion binding	2.42E-02
61	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.76E-02
62	GO:0042803: protein homodimerization activity	2.94E-02
63	GO:0004185: serine-type carboxypeptidase activity	3.10E-02
64	GO:0051537: 2 iron, 2 sulfur cluster binding	3.28E-02
65	GO:0005198: structural molecule activity	3.37E-02
66	GO:0005506: iron ion binding	3.50E-02
67	GO:0004519: endonuclease activity	3.76E-02
68	GO:0003690: double-stranded DNA binding	3.93E-02
69	GO:0080043: quercetin 3-O-glucosyltransferase activity	4.62E-02
70	GO:0080044: quercetin 7-O-glucosyltransferase activity	4.62E-02

Rank	GO Term	Adjusted P value
1	GO:0030427: site of polarized growth	0.00E+00
2	GO:0009507: chloroplast	9.38E-10
3	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.50E-04
4	GO:0009535: chloroplast thylakoid membrane	2.31E-04
5	GO:0016605: PML body	5.33E-04
6	GO:0055035: plastid thylakoid membrane	1.28E-03
7	GO:0005623: cell	1.31E-03
8	GO:0034707: chloride channel complex	1.57E-03
9	GO:0009840: chloroplastic endopeptidase Clp complex	1.88E-03
10	GO:0005811: lipid particle	2.93E-03
11	GO:0005886: plasma membrane	3.30E-03
12	GO:0016604: nuclear body	3.71E-03
13	GO:0016324: apical plasma membrane	4.12E-03
14	GO:0031969: chloroplast membrane	4.34E-03
15	GO:0005622: intracellular	7.93E-03
16	GO:0042651: thylakoid membrane	7.95E-03
17	GO:0015935: small ribosomal subunit	8.49E-03
18	GO:0046658: anchored component of plasma membrane	1.62E-02
19	GO:0019005: SCF ubiquitin ligase complex	2.19E-02
20	GO:0005802: trans-Golgi network	2.67E-02
21	GO:0005819: spindle	2.76E-02
22	GO:0005768: endosome	3.13E-02
23	GO:0005743: mitochondrial inner membrane	3.22E-02
24	GO:0031966: mitochondrial membrane	3.65E-02
25	GO:0043231: intracellular membrane-bounded organelle	3.81E-02
26	GO:0005773: vacuole	4.33E-02
27	GO:0009536: plastid	4.58E-02
28	GO:0009706: chloroplast inner membrane	4.92E-02