co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G51950

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090470: shoot organ boundary specification	0.00E+00
2	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
3	GO:0045176: apical protein localization	0.00E+00
4	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
5	GO:0034337: RNA folding	0.00E+00
6	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
7	GO:0009773: photosynthetic electron transport in photosystem I	1.29E-07
8	GO:0010027: thylakoid membrane organization	1.26E-05
9	GO:1901259: chloroplast rRNA processing	7.89E-05
10	GO:0008610: lipid biosynthetic process	1.35E-04
11	GO:0032544: plastid translation	1.69E-04
12	GO:0043953: protein transport by the Tat complex	1.75E-04
13	GO:0071277: cellular response to calcium ion	1.75E-04
14	GO:0070509: calcium ion import	1.75E-04
15	GO:0007263: nitric oxide mediated signal transduction	1.75E-04
16	GO:0046900: tetrahydrofolylpolyglutamate metabolic process	1.75E-04
17	GO:1904966: positive regulation of vitamin E biosynthetic process	1.75E-04
18	GO:0000481: maturation of 5S rRNA	1.75E-04
19	GO:1904964: positive regulation of phytol biosynthetic process	1.75E-04
20	GO:0080051: cutin transport	1.75E-04
21	GO:0065002: intracellular protein transmembrane transport	1.75E-04
22	GO:0006106: fumarate metabolic process	1.75E-04
23	GO:0005991: trehalose metabolic process	1.75E-04
24	GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway	1.75E-04
25	GO:0071588: hydrogen peroxide mediated signaling pathway	1.75E-04
26	GO:0015979: photosynthesis	2.75E-04
27	GO:1902326: positive regulation of chlorophyll biosynthetic process	3.96E-04
28	GO:0015908: fatty acid transport	3.96E-04
29	GO:0034755: iron ion transmembrane transport	3.96E-04
30	GO:0080005: photosystem stoichiometry adjustment	3.96E-04
31	GO:0030388: fructose 1,6-bisphosphate metabolic process	3.96E-04
32	GO:0010289: homogalacturonan biosynthetic process	3.96E-04
33	GO:1902448: positive regulation of shade avoidance	6.47E-04
34	GO:0006000: fructose metabolic process	6.47E-04
35	GO:0090391: granum assembly	6.47E-04
36	GO:0006518: peptide metabolic process	6.47E-04
37	GO:0010239: chloroplast mRNA processing	9.23E-04
38	GO:1901332: negative regulation of lateral root development	9.23E-04
39	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	9.23E-04
40	GO:0010371: regulation of gibberellin biosynthetic process	9.23E-04
41	GO:0009306: protein secretion	1.06E-03
42	GO:0009765: photosynthesis, light harvesting	1.22E-03
43	GO:0045727: positive regulation of translation	1.22E-03
44	GO:0015994: chlorophyll metabolic process	1.22E-03
45	GO:0010021: amylopectin biosynthetic process	1.22E-03
46	GO:0010222: stem vascular tissue pattern formation	1.22E-03
47	GO:0010109: regulation of photosynthesis	1.22E-03
48	GO:0032543: mitochondrial translation	1.56E-03
49	GO:0016554: cytidine to uridine editing	1.91E-03
50	GO:0018258: protein O-linked glycosylation via hydroxyproline	1.91E-03
51	GO:0009913: epidermal cell differentiation	1.91E-03
52	GO:0010405: arabinogalactan protein metabolic process	1.91E-03
53	GO:0048827: phyllome development	1.91E-03
54	GO:0042549: photosystem II stabilization	1.91E-03
55	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.91E-03
56	GO:0010019: chloroplast-nucleus signaling pathway	2.30E-03
57	GO:0010196: nonphotochemical quenching	2.70E-03
58	GO:0010444: guard mother cell differentiation	2.70E-03
59	GO:0015995: chlorophyll biosynthetic process	2.75E-03
60	GO:0007623: circadian rhythm	2.77E-03
61	GO:0018298: protein-chromophore linkage	3.04E-03
62	GO:0006353: DNA-templated transcription, termination	3.13E-03
63	GO:0070413: trehalose metabolism in response to stress	3.13E-03
64	GO:0006605: protein targeting	3.13E-03
65	GO:0009704: de-etiolation	3.13E-03
66	GO:0032508: DNA duplex unwinding	3.13E-03
67	GO:0010492: maintenance of shoot apical meristem identity	3.13E-03
68	GO:0016559: peroxisome fission	3.13E-03
69	GO:0009631: cold acclimation	3.51E-03
70	GO:0017004: cytochrome complex assembly	3.58E-03
71	GO:0006002: fructose 6-phosphate metabolic process	3.58E-03
72	GO:0048507: meristem development	4.05E-03
73	GO:0090333: regulation of stomatal closure	4.05E-03
74	GO:0010205: photoinhibition	4.54E-03
75	GO:0009638: phototropism	4.54E-03
76	GO:1900865: chloroplast RNA modification	4.54E-03
77	GO:0009735: response to cytokinin	4.57E-03
78	GO:0009416: response to light stimulus	5.23E-03
79	GO:0008285: negative regulation of cell proliferation	5.58E-03
80	GO:0006879: cellular iron ion homeostasis	5.58E-03
81	GO:0000038: very long-chain fatty acid metabolic process	5.58E-03
82	GO:0006364: rRNA processing	6.66E-03
83	GO:0010588: cotyledon vascular tissue pattern formation	6.70E-03
84	GO:0010102: lateral root morphogenesis	6.70E-03
85	GO:0009785: blue light signaling pathway	6.70E-03
86	GO:0006108: malate metabolic process	6.70E-03
87	GO:0010229: inflorescence development	6.70E-03
88	GO:0050826: response to freezing	6.70E-03
89	GO:0009718: anthocyanin-containing compound biosynthetic process	6.70E-03
90	GO:0006094: gluconeogenesis	6.70E-03
91	GO:0005986: sucrose biosynthetic process	6.70E-03
92	GO:0006541: glutamine metabolic process	7.28E-03
93	GO:0010020: chloroplast fission	7.28E-03
94	GO:0019253: reductive pentose-phosphate cycle	7.28E-03
95	GO:0010540: basipetal auxin transport	7.28E-03
96	GO:0055085: transmembrane transport	7.51E-03
97	GO:0005985: sucrose metabolic process	7.89E-03
98	GO:0071732: cellular response to nitric oxide	7.89E-03
99	GO:0010025: wax biosynthetic process	8.51E-03
100	GO:0006636: unsaturated fatty acid biosynthetic process	8.51E-03
101	GO:0009833: plant-type primary cell wall biogenesis	8.51E-03
102	GO:0005992: trehalose biosynthetic process	9.15E-03
103	GO:0008299: isoprenoid biosynthetic process	9.80E-03
104	GO:0006418: tRNA aminoacylation for protein translation	9.80E-03
105	GO:0010073: meristem maintenance	9.80E-03
106	GO:0035428: hexose transmembrane transport	1.12E-02
107	GO:0016226: iron-sulfur cluster assembly	1.12E-02
108	GO:0009686: gibberellin biosynthetic process	1.19E-02
109	GO:0071369: cellular response to ethylene stimulus	1.19E-02
110	GO:0010227: floral organ abscission	1.19E-02
111	GO:0042744: hydrogen peroxide catabolic process	1.36E-02
112	GO:0009790: embryo development	1.39E-02
113	GO:0042335: cuticle development	1.41E-02
114	GO:0042391: regulation of membrane potential	1.41E-02
115	GO:0010182: sugar mediated signaling pathway	1.49E-02
116	GO:0046323: glucose import	1.49E-02
117	GO:0010268: brassinosteroid homeostasis	1.49E-02
118	GO:0006633: fatty acid biosynthetic process	1.50E-02
119	GO:0048825: cotyledon development	1.64E-02
120	GO:0019252: starch biosynthetic process	1.64E-02
121	GO:0009451: RNA modification	1.69E-02
122	GO:0000302: response to reactive oxygen species	1.72E-02
123	GO:0016132: brassinosteroid biosynthetic process	1.72E-02
124	GO:0016032: viral process	1.81E-02
125	GO:0071281: cellular response to iron ion	1.89E-02
126	GO:0016125: sterol metabolic process	1.98E-02
127	GO:0009567: double fertilization forming a zygote and endosperm	1.98E-02
128	GO:0009911: positive regulation of flower development	2.24E-02
129	GO:0009409: response to cold	2.39E-02
130	GO:0042128: nitrate assimilation	2.42E-02
131	GO:0030244: cellulose biosynthetic process	2.71E-02
132	GO:0010311: lateral root formation	2.80E-02
133	GO:0009832: plant-type cell wall biogenesis	2.80E-02
134	GO:0000160: phosphorelay signal transduction system	2.80E-02
135	GO:0005975: carbohydrate metabolic process	2.83E-02
136	GO:0006508: proteolysis	2.89E-02
137	GO:0080167: response to karrikin	3.16E-02
138	GO:0016051: carbohydrate biosynthetic process	3.20E-02
139	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.27E-02
140	GO:0034599: cellular response to oxidative stress	3.31E-02
141	GO:0006099: tricarboxylic acid cycle	3.31E-02
142	GO:0009640: photomorphogenesis	3.84E-02
143	GO:0009644: response to high light intensity	4.06E-02
144	GO:0009737: response to abscisic acid	4.61E-02
145	GO:0009736: cytokinin-activated signaling pathway	4.74E-02

Rank	GO Term	Adjusted P value
1	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
2	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
3	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
4	GO:0004823: leucine-tRNA ligase activity	0.00E+00
5	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
6	GO:0005222: intracellular cAMP activated cation channel activity	0.00E+00
7	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	1.75E-04
8	GO:0051777: ent-kaurenoate oxidase activity	1.75E-04
9	GO:0045485: omega-6 fatty acid desaturase activity	1.75E-04
10	GO:0004856: xylulokinase activity	1.75E-04
11	GO:0070006: metalloaminopeptidase activity	1.75E-04
12	GO:0008242: omega peptidase activity	1.75E-04
13	GO:0015245: fatty acid transporter activity	1.75E-04
14	GO:0005221: intracellular cyclic nucleotide activated cation channel activity	1.75E-04
15	GO:0004333: fumarate hydratase activity	1.75E-04
16	GO:0019843: rRNA binding	2.71E-04
17	GO:0004222: metalloendopeptidase activity	3.74E-04
18	GO:0033201: alpha-1,4-glucan synthase activity	3.96E-04
19	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	3.96E-04
20	GO:0008805: carbon-monoxide oxygenase activity	3.96E-04
21	GO:0016630: protochlorophyllide reductase activity	3.96E-04
22	GO:0034722: gamma-glutamyl-peptidase activity	3.96E-04
23	GO:0047746: chlorophyllase activity	3.96E-04
24	GO:0009977: proton motive force dependent protein transmembrane transporter activity	3.96E-04
25	GO:0004565: beta-galactosidase activity	4.39E-04
26	GO:0004373: glycogen (starch) synthase activity	6.47E-04
27	GO:0002161: aminoacyl-tRNA editing activity	6.47E-04
28	GO:0070402: NADPH binding	6.47E-04
29	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	6.54E-04
30	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	9.23E-04
31	GO:0001872: (1->3)-beta-D-glucan binding	9.23E-04
32	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	9.23E-04
33	GO:0022891: substrate-specific transmembrane transporter activity	9.77E-04
34	GO:0080032: methyl jasmonate esterase activity	1.22E-03
35	GO:0043495: protein anchor	1.22E-03
36	GO:0009011: starch synthase activity	1.22E-03
37	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.22E-03
38	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.56E-03
39	GO:0004040: amidase activity	1.56E-03
40	GO:0003959: NADPH dehydrogenase activity	1.56E-03
41	GO:0004130: cytochrome-c peroxidase activity	1.91E-03
42	GO:0042578: phosphoric ester hydrolase activity	1.91E-03
43	GO:0016688: L-ascorbate peroxidase activity	1.91E-03
44	GO:1990714: hydroxyproline O-galactosyltransferase activity	1.91E-03
45	GO:0005261: cation channel activity	2.30E-03
46	GO:0005242: inward rectifier potassium channel activity	2.30E-03
47	GO:0016168: chlorophyll binding	2.47E-03
48	GO:0019899: enzyme binding	2.70E-03
49	GO:0004620: phospholipase activity	2.70E-03
50	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.04E-03
51	GO:0043022: ribosome binding	3.13E-03
52	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	4.05E-03
53	GO:0005381: iron ion transmembrane transporter activity	4.54E-03
54	GO:0016788: hydrolase activity, acting on ester bonds	4.94E-03
55	GO:0004177: aminopeptidase activity	5.58E-03
56	GO:0005262: calcium channel activity	6.70E-03
57	GO:0009982: pseudouridine synthase activity	6.70E-03
58	GO:0016491: oxidoreductase activity	6.78E-03
59	GO:0008266: poly(U) RNA binding	7.28E-03
60	GO:0030553: cGMP binding	7.89E-03
61	GO:0030552: cAMP binding	7.89E-03
62	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	8.51E-03
63	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	8.51E-03
64	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	8.51E-03
65	GO:0051536: iron-sulfur cluster binding	9.15E-03
66	GO:0005216: ion channel activity	9.80E-03
67	GO:0004176: ATP-dependent peptidase activity	1.05E-02
68	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.12E-02
69	GO:0016760: cellulose synthase (UDP-forming) activity	1.19E-02
70	GO:0004812: aminoacyl-tRNA ligase activity	1.33E-02
71	GO:0030551: cyclic nucleotide binding	1.41E-02
72	GO:0005355: glucose transmembrane transporter activity	1.56E-02
73	GO:0050662: coenzyme binding	1.56E-02
74	GO:0016853: isomerase activity	1.56E-02
75	GO:0016787: hydrolase activity	1.57E-02
76	GO:0048038: quinone binding	1.72E-02
77	GO:0005215: transporter activity	1.77E-02
78	GO:0000156: phosphorelay response regulator activity	1.89E-02
79	GO:0016791: phosphatase activity	1.98E-02
80	GO:0016759: cellulose synthase activity	1.98E-02
81	GO:0008237: metallopeptidase activity	2.06E-02
82	GO:0042802: identical protein binding	2.09E-02
83	GO:0016597: amino acid binding	2.15E-02
84	GO:0003723: RNA binding	2.44E-02
85	GO:0030247: polysaccharide binding	2.52E-02
86	GO:0008236: serine-type peptidase activity	2.61E-02
87	GO:0003729: mRNA binding	2.75E-02
88	GO:0030145: manganese ion binding	3.00E-02
89	GO:0004712: protein serine/threonine/tyrosine kinase activity	3.41E-02
90	GO:0016757: transferase activity, transferring glycosyl groups	3.42E-02
91	GO:0052689: carboxylic ester hydrolase activity	3.49E-02
92	GO:0004871: signal transducer activity	3.96E-02
93	GO:0043621: protein self-association	4.06E-02
94	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.28E-02

Rank	GO Term	Adjusted P value
1	GO:0000408: EKC/KEOPS complex	0.00E+00
2	GO:0043235: receptor complex	0.00E+00
3	GO:0009507: chloroplast	9.21E-27
4	GO:0009535: chloroplast thylakoid membrane	2.27E-15
5	GO:0009570: chloroplast stroma	3.29E-11
6	GO:0009534: chloroplast thylakoid	4.00E-10
7	GO:0009941: chloroplast envelope	9.13E-08
8	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.28E-06
9	GO:0009579: thylakoid	7.11E-05
10	GO:0016021: integral component of membrane	1.16E-04
11	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	1.75E-04
12	GO:0009515: granal stacked thylakoid	1.75E-04
13	GO:0045239: tricarboxylic acid cycle enzyme complex	1.75E-04
14	GO:0031361: integral component of thylakoid membrane	1.75E-04
15	GO:0032040: small-subunit processome	3.86E-04
16	GO:0009897: external side of plasma membrane	6.47E-04
17	GO:0033281: TAT protein transport complex	6.47E-04
18	GO:0042651: thylakoid membrane	7.52E-04
19	GO:0031969: chloroplast membrane	1.21E-03
20	GO:0009523: photosystem II	1.52E-03
21	GO:0009501: amyloplast	3.13E-03
22	GO:0031977: thylakoid lumen	4.56E-03
23	GO:0009654: photosystem II oxygen evolving complex	9.80E-03
24	GO:0010287: plastoglobule	1.13E-02
25	GO:0009543: chloroplast thylakoid lumen	1.19E-02
26	GO:0048046: apoplast	1.40E-02
27	GO:0005770: late endosome	1.49E-02
28	GO:0005840: ribosome	1.63E-02
29	GO:0019898: extrinsic component of membrane	1.64E-02
30	GO:0005618: cell wall	1.65E-02
31	GO:0010319: stromule	2.06E-02
32	GO:0009707: chloroplast outer membrane	2.71E-02
33	GO:0000151: ubiquitin ligase complex	2.71E-02
34	GO:0015934: large ribosomal subunit	3.00E-02