gene detail

Gene description

TAIR ID: AT3G28480

Short description: Oxoglutarate/iron-dependent oxygenase

Pathogen responsiveness: -0.39

General responsiveness: -0.79

Orthologous

Rice:

OS10G0413500 OS05G0489100

Maize:

GRMZM2G520535

Wheat:

TA.9300.1.S1_AT

GO biological process

peptidyl-proline hydroxylation to 4-hydroxy-L-proline, oxidation-reduction process

GO cellular component

vacuolar membrane, endosome, extracellular region, endoplasmic reticulum membrane, trans-Golgi network, Golgi apparatus, integral component of membrane

GO molecular function

procollagen-proline 4-dioxygenase activity, L-ascorbic acid binding, iron ion binding, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Protein domain

Pfam	PF01549, ShK domain-like
Pfam	PF13640, 2OG-Fe(II) oxygenase superfamily
SMART	SM00702, P4Hc
SMART	SM00254, ShKT

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath00330: Arginine and proline metabolism

Transcriptional regulation

Regulator:
AT1G76890

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view
GSE26679_EDR1_GC  view

Differentially expressed condition

13 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE13739	Col, WT, control 7 d	Col, WT, G.orontii 7 d	1.83	2.23E-09
GSE17464	Penta, control	Penta, PstDC3000 12 h	1.59	3.56E-05
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	1.69	4.16E-04
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	2.82	3.72E-15
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	2.48	2.75E-14
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	2.50	1.75E-14
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	2.01	4.37E-13
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	2.93	2.02E-15
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	1.91	4.60E-11
GSE5520	Col, WT, control 24 h	Col, WT, PstDC3000 24 h	1.59	3.03E-02
GSE6556	Col, gh3.5, control	Col, gh3.5, PstDC3000 AvrRpt2 48 h	1.72	4.09E-03
GSE9674	Ws-4, AtMYB30 ox, control	Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h	2.03	6.05E-04
GSE9674	Ws-4, WT, control	Ws-4, WT, Xanthomonas strain Xcc147 6 h	1.95	9.27E-04